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Biophysical Journal logoLink to Biophysical Journal
. 2017 Jan 24;112(2):339–345. doi: 10.1016/j.bpj.2016.12.023

Undulations Drive Domain Registration from the Two Membrane Leaflets

Timur R Galimzyanov 1,2, Peter I Kuzmin 1, Peter Pohl 3, Sergey A Akimov 1,2,
PMCID: PMC5266264  PMID: 28122219

Abstract

Phase separation in biological membranes plays an important role in protein targeting and transmembrane signaling. Its occurrence in both membrane leaflets commonly gives rise to matching liquid or liquid-ordered domains in the opposing monolayers. The underlying mechanism of such co-localization is not fully understood. The decrease of the line tension around the thicker ordered domain constitutes an important driving force. Yet, robust domain coupling requires an additional energy source, which we have now identified as thermal undulations. Our theoretical analysis of elastic deformations in a lipid bilayer shows that stiffer lipid domains tend to distribute into areas with lower fluctuations of monolayer curvature. These areas naturally align in the opposing monolayers. Thus, coupling requires both membrane leafs to display a heterogeneity in splay rigidities. The heterogeneity may either originate from intrinsic lipid properties or be acquired by adsorption of peripheral molecules. Undulations and line tension act synergistically: the gain in energy due a minimized line tension is proportional to domain radius and thus primarily fuels the registration of smaller domains; whereas the energetic contribution of undulations increases with membrane area and thus primarily acts to coalesce larger domains.

Introduction

Cell membranes are highly heterogeneous. The cytoplasmic and exofacial leaflets differ in their composition. Both of them contain physically distinguished regions. Small liquid-ordered (Lo) domains (<200 nm in diameter) that are enriched in cholesterol and sphingomyelin have been identified and termed “rafts” (1). They are thought to play an essential role in cell signaling (2), apoptosis (3), endocytosis (4), etc. This requires the Lo domains from opposing leaflets to be in register. It would otherwise be difficult to imagine how, for example, protein targeting to rafts occurs.

Experiments on much larger liquid-ordered domains in model membranes (5, 6, 7) have shown strong coupling of Lo domains that co-localize with Lo domains in the opposing leaflet. It has never been observed that two such Lo domains spontaneously decouple. On the contrary, it took considerable hydrodynamic shear stress to move domains in one leaflet of a supported bilayer out of register with domains in the other leaflet (8).

Thus far, no consensus has been reached about the mechanism of domain registration. It is only clear that it requires neither cholesterol nor any other specific lipid or proteinaceous component (7, 9, 10, 11, 12). Most prevalent is the idea that the two leaflets interact at the membrane midplane via overhang. However, measurements of interleaflet friction revealed the same mobility for long and short lipid molecules suggesting that there might not be permanent overhang (13). Nevertheless, the hypothesis about membrane midplane interaction is still en vogue, although, it is unclear 1) whether the liquid-disordered (Ld) domains and Lo domains repel each other, or 2) whether the phenomenon is caused by attraction of the two Ld domains and/or the two Lo domains, or 3) what the underlying attractive or repulsive forces may generate (14, 15). An alternative hypothesis with more mechanistic insight is that domain registration minimizes the line tension at the perimeter of the thicker Lo phases (11): a small shift in the boundary between Ld and Lo domains in the two leaflets suffices to minimize the elastic deformations that arise from the hydrophobic mismatch between the two phases. As a result, the energy of the registered domains is smaller than the energy of two isolated domains in the opposing monolayers. The hypothesis is supported by molecular dynamics simulations that have visualized the boundary mismatch between both membrane leaflets (16, 17, 18). Furthermore, it has been questioned if line tension alone may drive registration (19). That is, special conditions have been identified (the area SR of all Lo domains per monolayer covers between 47% and 53% of the total membrane area S0) in which minimization of the line tension fails to ensure domain registration (12).

Our previous experimental observation of mutual attraction between stiffed regions in opposing membrane monolayers (20) may well serve to close the gap between the current theoretical description and the experimental observation that registration always occurs independent of the ratio between Lo and Ld phases. We make use of the experimental observation that the splay rigidity of the Lo phase is two to five times larger than that of the Ld phase (21, 22). We are proposing a new coupling theory, to our knowledge, which is based on the difference in splay moduli. Accordingly, thermal undulations are suppressed in the Lo phase. Recruitment of weakly fluctuating monolayer Lo domains from opposing leaflets into the same membrane patch maximizes the area in which the membrane is free to undulate. Thus domain registration maximizes the entropy of the system. The proposed model builds on simple physical principles and does not impose any limitations on membrane composition.

Materials and Methods

The model assumes that the membrane represents an infinitely thin film with splay moduli 2BR and 2BS in the regions of the bilayer where both monolayers are in the Lo and in the Ld phases, respectively (Helfrich approximation) (23). The area Sint of the membrane where the two phases are not in register is characterized by the splay modulus 2Bint = BS + BR (Fig. 1). In that area, both leaflets interact with an effective energy surface density (energy per unit area) Wint that plays the role of an external “field.” When negative in sign, it forces the domains from opposing leaflets to be out of register. To be able to describe both freestanding and supported bilayers, we also account for the interaction of the membrane with the solid support. The latter is determined by three factors: 1) the van der Waals attraction; 2) hydration repulsion; and 3) electrostatic interactions. The resulting energy term has a minimum at a certain separation distance between membrane and support. Thus, it seems reasonable to expand the interaction energy in the vicinity of the minimum up to the second order of smallness to account for the effect of the substrate on the membrane.

Figure 1.

Figure 1

Schematic representation of the spatial distribution of liquid-ordered Lo (black) and liquid-disordered Ld (gray) phases in the membrane. SS, SR, and Sint denote the areas of the bilayer where the Ld phases from both monolayers are in register, where the Lo phases from both monolayers are in register, and the area out of register, respectively. The corresponding splay moduli are equal to 2BS, 2BR, and BS + BR.

The registration of lipid domains should also depend on lateral tension because of its effect on line tension at domain boundaries (11). This favors the merger of domains, i.e., minimization of boundary energy is achieved via the shortening of the boundary length (24, 25). Increased domain size, in turn, is likely to augment the contribution of thermal fluctuations to domain coupling energy. This effect is opposed by the suppression of vesicle shape fluctuations, as has been shown by micropipette aspiration of giant unilamellar vesicles (26). Thus, when analyzing fluctuations as a driving force for domain registration, it is mandatory to account for the lateral membrane tension, σ.

We introduce both a Cartesian coordinate system so that its xy plane coincides with the support and the function U(r) = U0(r) + u(r) to describe the instant shape of the fluctuating membrane. Here r and U(r) are the radius-vector of a small membrane patch and the minimal distance that separates it from xy plane, respectively. u(r) represents an arbitrary deviation of the membrane shape from its shape in the ground state U0(r). Thus, for the total energy W of the system, we find

W=SR(α2U2+2BR2(ΔU)2+σ2(U)2)+SS(α2U2+2BS2(ΔU)2+σ2(U)2)+Sint(α2U2+BS+BR2(ΔU)2+σ2(U)2)+SintWint, (1)

where Δ, , and SS are the Laplace operator, the gradient operator, and the region of the bilayer in which the Ld/Ld domains are in register, respectively. Each of the three area integrals represents a sum of three terms: the first is proportional to the elastic constant α and accounts for the bilayer-substrate interaction; the second is determined by splay deformation; and the third depends on lateral membrane tension, σ.

To adequately describe the membrane shape fluctuations, we expand U(r) in a Fourier series: U(r)=(a2/S)n,m=Lx,y/2aLx,y/2a(U0,nm+unm)eiqnmr, where qmn is the wave-vector with the coordinates ((2πn/Lx),(2πm/Ly)) that is given by the inverse wavelength of membrane shape fluctuations. Lx and Ly indicate the membrane dimensions in the x and y directions, respectively. The characteristic size a determines the ultraviolet cutoff qUV=π/a of the wave-vector. unm denotes the complex coefficients of the Fourier expansion, whereas U0,nm stands for the Fourier components of the membrane shape in the ground state. The membrane energy functional in the Fourier representation can now be written as

W=S[α2U(r)2+σ2(U)2+2B2(ΔU(r))2]d2r=a2n=1m=L/2aL/2a[α2+σ2(qn2+qm2)+2B2(qn2+qm2)2]|U0,nmunm|2, (2)

where qn = 2πn/Lx and qm = 2πm/Ly. To arrive at a compact notation, we introduced the placeholder B for the splay moduli in the three membrane regions: B = BS, BR, or Bint. The thermodynamic average of all possible membrane shapes allows us to calculate Sint as follows:

Sint=1Z0min{2sR,2sS}eW/kBTSintDu(r)dsint, (3)

where Z=0min{2sR,2sS}eW/kBTDu(r)dsint is a partition function of the system, and kB and T are the Boltzmann constant and the absolute temperature, respectively. The upper limit of the integral is found by assuming that either all Lo domains or all Ld domains (whichever occupies the larger area) are out of register. It is thus equal to the minimal value of either 2SR or 2SS. Defining the integral over the membrane shapes as Zdef=0min{2sR,2sS}eW/kBTDu(r) and solving it as an integral over unm yields

Zdef=n,meWkBTdIm(unmπa)Re(unmπa)=n,mkBTa2[α2+σ2(qn2+qm2)+2B2(qn2+qm2)2]. (4)

Taking the logarithm of both sides of Eq. 4 helps to find the double product Πn,m, by converting it into a sum of logarithms. Then, passing from summation to integration, and substituting the variables of integration: n˜=a(n/Lx),m˜=a(m/Ly), we derive the following:

lnZdef=S2a2ln(2B(2π)42kBT)Sa201/21/21/2ln(αa42B(2π)4+σa22B(2π)2(n˜2+m˜2)+(n˜2+m˜2)2)dn˜dm˜. (5)

To avoid bulky notations we introduce the functional Q[α, σ, B] to abbreviate the right-hand side of Eq. 5 as follows:

lnZdef=12Sa2ln(Q[α,σ,B]). (6)

Eq. 6 allows us to calculate Z

Z=(Q[α,σ,BR]SR2a2Q[α,σ,BS]SS2a2)0min{2sR,2sS}((Q[α,σ,BR]Q[α,σ,BS]Q[α,σ,Bint]2)Sint/22a2)eWintSintkBTdSint, (7)

and Sint explicitly:

Sint=0min{2sR,2sS}(Q[α,σ,BR]Q[α,σ,BS]Q[α,σ,Bint]2eWint4kBT)Sint/22a2SintdSint0min{2sR,2sS}(Q[α,σ,BR]Q[α,σ,BS]Q[α,σ,Bint]2eWint4kBT)Sint/22a2dSint=16+8βmin{sR,sS}/2a2(ln(β)min{sR,sS}/a22)4(βmin{sR,sS}/2a21)ln(β), (8)

where β=((Q[α,σ,BR]Q[α,σ,BS])/(Q[α,σ,Bint]2))e(4Winta2/kBT). For min{SR, SS}/a2 ≫ 1, i.e., for macroscopic domains, Eq. 8 can be rewritten as

Sint={4a2ln(β),β<1min{2sR,2sS},β>1. (9)

Eq. 9 specifies that Sint is negligibly small (Sint ≪ min{SR, SS}, complete phase registration) for β < 1 and that there is no phase registration for β > 1. For the critical value β = 1 we find the fluctuation induced interaction energy surface density W between identical phases in opposing leaflets as

W=Wint(β=1)=kBT4a2ln(Q[α,σ,Bint]2Q[α,σ,BR]Q[α,σ,BS]). (10)

According to Eq. 5, both α and σ enter the final expression for Q in the following combinations: (αa4/2B(2π)4),(σa2/2B(2π)2), i.e., Q strongly depends on a. Characteristic length a should lie in the range of ∼0.5–2 nm because 1) the diameter of a lipid head group is ∼0.5 nm and 2) the monolayer thickness amounts to ∼2 nm. The cutoff wave-vector qUV=π/a was taken from molecular simulations (27). These simulation data revealed that splay fluctuations are thermally activated up to wave-vectors qmax ∼1.5 nm–1. Fluctuations with wave-vectors q > qmax do not include splay deformations, rather protrusions-like defects. The energy of these defects is determined by the surface tension at the interface between lipid tails and water. It is thus similar for ordered and disordered membrane regions. If so, the wave-vector range q > qmax does not contribute to the domain coupling energy, and qmax can be treated as the ultraviolet cutoff in our model, which leads to the estimate a = π/qUV ∼2 nm. Because there is no sharp boundary between splay and protrusion fluctuations (27), we consider a ≈ 1 – 2 nm in our calculations.

To simplify Eq. 10, we estimate the substrate-bilayer interaction constant α. In case of neutral lipids this interaction is manifested by attractive van der Waals forces and hydration repulsion

Wls=P0eb/lhHa12πb2, (11)

where b is the distance between substrate and lipid bilayer; Ha is the Hamaker constant; P0 is the disjoining pressure (= hydration pressure that leads the repulsion of two parallel hydrophilic surfaces); and lh is the characteristic length of hydration repulsion. These parameters can be estimated as follows: Ha ≈ (3 ÷ 10) × 10−21 J, P0 ≈ 4 × 107 ÷ 1010 Pa, and lh ≈ 0.1 – 0.3 nm (28). We approximate Wl-s by its Taylor series with respect to the distance around the equilibrium value beq, which yields α=d2Wls/db2∼6 kBT/nm4 (here kBT ∼4 × 10−21 J).

For BR ∼ 60 kBT, BS ∼ 20 kBT, and σ ∼ 1 mN/m ≈ 0.25 kBT/nm2 (26), the above introduced dimensionless parameters adopt the following values: (αa4/2B(2π)4)<3×104,(σa2/2B(2π)2)<103. Because 1) they are smaller than 10−3, and 2) W slightly depends on σ (compare Fig. 3), the function Q[0, 0, B] = B can be used for calculations in a wide range of parameters. Denoting W under these conditions as W0 we can use a significantly simplified form of Eq. 10

W0=kBT4a2ln[(BS+BR)24BSBR]. (12)

Because the term in the square brackets is always greater than one, its logarithm is a positive value. Consequently, W0 stands for a repulsive interaction between Lo and Ld phases.

Figure 3.

Figure 3

The dependence of W on σ for freestanding membranes. BS and BR are assumed to be equal to 10 kBT and 30 kBT, respectively. For all other parameters and the curve code see Fig. 2.

Results and Discussion

Eq. 10 allows a depiction of W between monolayer Ld and Lo domains (Fig. 2). The domain interaction energy Wfl = SRW induced by fluctuations increases with 1) domain area SR and 2) the difference between the BS and BR values. However, minimization of Wfl is not the only reason for domain registration. We previously demonstrated (11) that minimization of the line tension around the thicker ordered domain also serves to bring the domains from opposing monolayers in register. The resulting gain in energy is proportional to the domain perimeter. These observations suggest that the registration of small domains is governed by the energy of line tension Wlt, whereas that of large domains is governed by undulations. We found the characteristic radius R for the crossover from the line-tension-dominated registration to the fluctuation-dominated one by equating both contributions for BR = 2BS, a = 1.5 nm and the line tension γ = 0.25 kBT/nm (11) to be equal to 38 nm. The corresponding coupling energy amounted to 60 kBT. Thus, Wlt only governs the coupling of small Lo domains with radius R < R as it linearly depends on R. For larger Lo domains (R > R) Wfl dominates, because it depends on domain area, increasing with the square of the radius. For the very large domains (RR) that are observed by conventional light microscopy in model membranes, Wlt is much smaller than Wfl. The finite domain size R provide the infrared cutoff, such that fluctuations with wavelength λ > R do not affect domains and do not contribute to domain registering. However, the energetic contribution of undulations sharply declines with increasing wavelengths. Only curvature undulations with wavelengths in the vicinity of the ultraviolet cutoff (λUVπ/qUV) substantially contributes to the coupling energy density W, so W almost does not depend on domain size.

Figure 2.

Figure 2

The dependence of the Lo-Ld repulsion energy density, W, on the splay modulus of the Lo phase for freestanding membranes at zero external lateral tension σ. The splay modulus of the Ld phase in one leaflet was assumed to be equal to BS = 10 kBT. The solid, dashed, and dotted curves correspond to a = 1, 1.5, and 2 nm, respectively.

We may thus compare our theoretical W with experiments in which hydrodynamic shear forces were used to decouple the macroscopic domain in the upper leaflet from its counterpart in the lower leaflet. For the reasonable BR/BS ratio of 2 and a = 1.5 nm we find excellent agreement with the experimental value of 0.016 kBT/nm2 (8) (Fig. 2).

In line with the general Eq. 10, lateral tension reduces the amplitude of the thermal membrane fluctuations, and thereby diminishes W (Fig. 3). Nevertheless, even values of σ as high as ∼10 mN/m have only a modest effect on W, although they are large enough to result in membrane rupture (29). This result seems to be counterintuitive: micropipette aspiration of large unilamellar vesicles revealed that even moderate tension removes the undulations and flattening out the bilayer (26). However, only fluctuations with larger wavelengths are really suppressed, leaving unaffected small wavelength undulations, which are the key contributors to the domain coupling energy. The evaluation of bending and tension energy densities of fluctuations with wavelength λ and amplitude A, which are proportional to ∼BA2/λ4 and ∼σA2/λ2, respectively, confirms the conclusion. That is, at constant A, undulations with short wavelengths survive because strong membrane bending has little effect on membrane area. These highly curved membrane areas (small λ) act to attract Ld lipids while the stiff Lo lipids accumulate in the flat area. Since the main contribution to W comes from the small wave-length fluctuations, W only weakly depends on σ (Fig. 3).

Similar to σ, a solid support also suppresses the thermal membrane fluctuations. Analogously, W is only modestly affected so that it still governs domain registration (Fig. 4). Substrate proximity hampers the collective motion of lipids (30, 31) while reducing the mobility of individual lipids by only two- to fivefold (32, 33). Thus, domains in the substrate-adhering leaflet are completely immobile laterally. Domain movement in the opposing leaflet must also be hampered because of the strong friction between the monolayers (13). In consequence domain motion is completely missing in the nonadhering leaflet of supported planar bilayers that were created by the Langmuir-Blodgett technique (30). Such movement is only observed upon exposure to large hydrodynamic forces. However, ordered domains in the nonadhering leaflet that are forced out of register with domains in the adhering monolayer do not move back into register when no longer exposed to the hydrodynamic force (8). Thus, it is no surprise that atomic force experiments on supported bilayers reported the misalignment of domains in the individual leaflets (34). These results are not in contrast to our calculations, as we only consider mobile domains. That is, substrate proximity should not alter the undulation spectrum of the membrane. Its effect on the domains’ mobility results in an increase of the characteristic time of domain registration but has little effect on coupling energy.

Figure 4.

Figure 4

The dependence of W on the membrane-support interaction in the absence of σ. Parameters and the curve code are chosen as in Fig. 3.

In contrast to domain registration in opposing monolayers, molecular dynamics simulations proposed that antiregistration may also be an energetically stable state (16). That is, ordered and disordered domains from the two monolayers distributed in such a way that every ordered domain was facing a disordered domain and vice versa. Hydrophobic mismatch is missing at the interface between the domains, because such a bilayer would be homogeneous in thickness, thus completely canceling it in the very peculiar stoichiometry of a 1:1 ratio of Lo and Ld lipids that was subject to molecular dynamics simulations (16). Nevertheless, the simulated antiregistration has not been observed in an experiment so far because all membranes in the vitro systems undulate. In contrast, the in silico system is unable to capture membrane undulations because of the common restrictions in both size and simulated time span. Thus, such calculations cannot reproduce the resulting repulsive interaction between Lo and Ld phases.

The ideal system for testing our theory is a lipid bilayer that is unable to undulate while its individual lipids and its lipid domains retain full lateral mobility in at least one monolayer. Such a system is very difficult to realize since undulations and mobility are linked to each other. Thus, neither a decrease in temperature nor depositing the bilayer on a solid support seems to be a promising approach. Tethering the bilayer in limited contact areas to a support may represent a solution. However, adhesion-induced domain formation has previously been observed in such a scenario (35). Thus it requires suspended bilayers with a vast number of extremely small adhesion sites. Such bilayers have recently been described on top of streptavidin crystals, which in turn were placed on top of supported lipid bilayers (36). It remains to be clarified whether high-frequency undulations are really suppressed on this platform or, as in the case of membranes under tension, these undulations persist and thus drive domain registration.

An alternative way to test our theory would be to prevent thermal fluctuations and hydrophobic mismatch to contribute to domain coupling energy. This can be achieved by designing a phase-separated membrane where ordered and disordered phases have nearly the same splay moduli and bilayer thicknesses. This should be possible by carefully choosing long-tail unsaturated and short-tail saturated lipids (26).

Our theory is in line with the observed registration of liquid-ordered domains in multilayer lipid stacks (37, 38). That is, the narrow spacing between individual bilayers dampens undulations. Placing the stiffed regions in the different bilayers directly on top of each other minimizes the effect. Thus registration in a multibilayer stack is due to the same mechanism that ensures registration between the monolayers of a single bilayer.

In summary, we have shown that thermal membrane fluctuations act to register Lo domains from opposing membrane leaflets. To minimize W, the stiffer Lo domains tend to distribute into areas with lower curvature, which naturally coincide in the opposing monolayers. Thus, registration is driven by the difference between the splay rigidities of different membrane domains. Because the mechanism also works for supported bilayers, it nicely serves to explain the formation of stacks of macroscopic Lo domains in multilayer membrane structures (37, 38). There are no constraints on the origin of these rigidities. That is, the current theory also explains the registration of domains that are induced by the adsorption of peripheral peptides (20) or scaffolding proteins (39). It avoids the artificial introduction of (thus far enigmatic) interactions at the membrane midplane (14, 19) to explain registration and to rule out antiregistration.

Author Contributions

T.R.G. designed the research and performed calculations; P.I.K. generalized and improved the theoretical model; P.P. designed the research; and S.A.A. analyzed the results and served as the scientific coordinator. All authors wrote and corrected the manuscript.

Acknowledgments

We thank Quentina Beatty for editorial help.

The work was supported by the government of the Russian Federation through Goszadanie project 3.2007.2014/K, by the Ministry of Education and Science of the Russian Federation in the framework of Increase of Competitiveness Program of “MISiS,” and by the Russian Foundation for Basic Research (grants 16-34-01203 and 16-04-00556). We gratefully acknowledge the joint support of the Russian Foundation for Basic Research (grant 15-54-15006) and of the Austrian Science Fund (F.W.F., grant 12267-B28).

Editor: Georg Pabst

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