Abstract
Tumour suppressor p53 or proto-oncogene MYC is frequently altered in squamous carcinomas, but this is insufficient to drive carcinogenesis. We have shown that overactivation of MYC or loss of p53 via DNA damage triggers an anti-oncogenic differentiation-mitosis checkpoint in human epidermal keratinocytes, resulting in impaired cell division and squamous differentiation. Forkhead box M1 (FOXM1) is a transcription factor recently proposed to govern the expression of a set of mitotic genes. Deregulation of FOXM1 occurs in a wide variety of epithelial malignancies. We have ectopically expressed FOXM1 in keratinocytes of the skin after overexpression of MYC or inactivation of endogenous p53. Ectopic FOXM1 rescues the proliferative capacity of MYC- or p53-mutant cells in spite of higher genetic damage and a larger cell size typical of differentiation. As a consequence, differentiation induced by loss of p53 or MYC is converted into increased proliferation and keratinocytes displaying genomic instability are maintained within the proliferative compartment. The results demonstrate that keratinocyte oncogene-induced differentiation is caused by mitosis control and provide new insight into the mechanisms driving malignant progression in squamous cancer.
Introduction
Although squamous cell carcinomas (SCCs) in different locations such as skin, head and neck or oesophagus are heterogeneous in clinic and prognosis, they share a similar histology with cell morphology reminiscent of the differentiated layers of the epidermis. For this reason they are also referred to as epidermoid carcinomas. In addition, they share similar risk factors that cause genetic damage, including ultraviolet light, human papillomavirus, tobacco and alcohol. Therefore, they might share common or overlapping molecular mechanisms. SCCs are often aggressive and have poor prognosis. Finding common pathways to SCCs would provide a new basis for their diagnosis and treatment.
Human epidermis is a paradigm of self-renewal stratified squamous epithelium highly exposed to mutagenic hazard and frequently affected by cancer. The tumour suppressor protein p53, also known as the guardian of the genome, is mutated in most human skin SCCs (80%),1, 2 although its alteration is not sufficient for the development of epithelial skin cancer.3, 4 Within the same lines, it is well established that proto-oncogene MYC in keratinocytes promotes differentiation instead of proliferation.5, 6, 7, 8 Similarly, overactivation of a variety of cell growth promoters including the DNA replication protein Cyclin E is not tumourigenic when overexpressed in epidermal cells9, 10, 11, 12 (reviewed in Gandarillas13). The cell cycle regulation explaining this resistance of keratinocytes to transformation upon cell cycle deregulation remains intriguing but is critical to understand squamous carcinogenesis. Recently, we have reported that loss of p53 causes squamous differentiation in epidermal human keratinocytes.14 This might explain why inactivation of p53 does not drive skin carcinogenesis by itself and, notably, why sun-exposed healthy skin often contains patches of cells with the mutated protein that cause no clinical impact.15, 16, 17 This finding points at a self-protective response of the epidermis against oncogenic transformation. We have shown that epidermal keratinocytes respond to a differentiation-mitosis checkpoint (DMC) that triggers squamous differentiation in the event of cell cycle deregulation.13, 18 The DMC functions as an oncogene-induced differentiation response (OID).13 Upon hyperactivation of the cell cycle, keratinocytes block cell division and trigger terminal differentiation, although they fail to maintain G2/M arrest (mitotic slippage) and continue DNA replication (endoreplication), become polyploid and significantly increase their size. Differentiating keratinocytes migrate towards the surface of the epidermis and are finally eliminated from the skin by shedding. We have proposed that because of the DMC, precancerous alterations need additional modifications in the mitosis control for epidermal carcinogenesis to occur.14 We now have challenged this model by overexpressing forkhead box M1 (FOXM1) in human keratinocytes after overactivation of conditional MYC or inactivation of endogenous p53.
The FOXM1 transcription factor is a mammalian regulator of cell cycle progression and frequently upregulated in human cancer.19 Although FOXM1 can induce cell cycle progression into the DNA replication S phase (G1/S), it plays a major role in the G2/M transition by the transactivation of regulators of mitosis and cytokinesis such as Cyclin B, Aurora B, Polo-like kinase and CENP.20 FOXM1 is frequently deregulated in SCCs of head and neck and the skin.21, 22
The results herein show that FOXM1, in combination with precancerous cell growth deregulation, allows human keratinocytes to proliferate in spite of accumulating DNA damage and therefore promoting genomic instability. This may explain why mutated p53 and deregulated FOXM1 are both frequently selected in cancer.
Results
FOXM1 rescues the proliferative block caused by inactivation of p53
We aimed to investigate whether FOXM1 affects the loss of proliferation potential observed in primary human keratinocytes when the expression of p53 is inhibited. To this end, we silenced p53 by means of a specific lentiviral construct carrying a short hairpin RNA (shRNA; shp53)14, 23 in human keratinocytes (Kshp53) and then overexpressed FOXM1 (Kshp53/FOXM1) by a lentiviral vector. Figures 1a–c and Supplementary Figure 1a show the downregulation of p53 or the overexpression of FOXM1 as determined by immunofluorescence, western blot or real-time PCR. shp53 was delivered into 90–95% of cells (Supplementary Figure 1a).14 Downregulation of p53 not only reduced the amount of protein but also its ability to induce its target gene p21Cip (Figure 1b). As described previously,14 although cell number did not decrease, by 5 days Kshp53 cells halted proliferation as compared with control cells carrying the empty vector (Figure 1d). However, Kshp53/FOXM1 cells continued to proliferate even further than control cells or cells overexpressing FOXM1 only. This observation was confirmed by the striking increase in the cell count of the Kshp53/FOXM1 cultures (Figure 1e). The effect on cell proliferation was confirmed by the inhibition of p53 with a second shRNA (shp53-2, data not shown).
To investigate whether FOXM1 affected the clonogenic capacity of Kshp53, we performed clonogenicity assays 5 days after introducing shp53-GFP and/or FOXM1 (Figure 1f). These assays allow to detect the effect on cell fate by estimating both the capacity to form colonies and the degree of cell expansion of the stem (large colonies, >2 mm) or the committed progenitor amplifying cells (small colonies, <1 mm).24 Overexpression of FOXM1 in normal keratinocytes increased their clonogenic potential (Figure 1f), consistently with previous observations in cells from oral epithelium.25 However, in the Kshp53 cultures the number of total and proliferative colonies was reduced compared with controls, whereas the number of abortive differentiated colonies was increased. In contrast, Kshp53/FOXM1 cells recovered and improved the potential of control cells. The size and the number of large colonies generated by putative stem cells were greatly increased in the Kshp53/FOXM1 cultures. Interestingly, the size of small colonies, formed by transit amplifying progenitors, was also increased. Thus, ectopic FOXM1 rescues the proliferative and clonogenic capacity of human epidermal keratinocytes that is lost by inactivation of p53. Although Kshp53/FOXM1 cells proliferated more than FOXM1 cells 5 days after infection (Figure 1e), their clonogenicity potential was weaker as the loss of p53 had already driven cell differentiation (Figure 1f).
FOXM1 attenuates the squamous differentiation response caused by loss of p53
As the ectopic expression of FOXM1 improves the proliferative capacity of Kshp53, we aimed to investigate whether FOXM1 affects their differentiation response. At 3 days after gene delivery the proportion of Kshp53/FOXM1 cells expressing the epidermal differentiation markers involucrin, keratin K1 and filaggrin significantly decreased (Figures 2a–c and Supplementary Figures 1b and c). The inhibition of differentiation by FOXM1 was also observed when the shp53-2 was used (data not shown). Keratinocytes enlarge and become more complex as they differentiate and this can be monitored by flow cytometry by means of increased light scattering.24, 26 Accordingly with the decrease in the expression of differentiation markers, we found that the percent of cells with high scatter parameters typical of differentiation was also decreased in Kshp53/FOXM1 with respect to Kshp53 (Figure 2b). It is important to mention that differentiation of human epidermal keratinocytes increases at cell confluence,27 when keratinocytes are pushed to stratify and detach. Kshp53/FOXM1 cells reached confluence faster and stratified more than controls and certainly than Kshp53 cells (Figure 1d and Supplementary Videos 1 and 2). In addition, at confluence and in spite of a higher cell density, FOXM1 inhibited the initiation of differentiation as the proportion of cell shedding into the medium was attenuated (Figure 2d). Increased stratification and decreased shedding in Kshp53/FOXM1 populations might be related to increased expression of β1 integrin (Figure 2e). The β1 integrins are adhesion molecules that maintain keratinocytes attached to the basement membrane and thus their proliferative potential.28 They are lost at differentiation. Therefore, although FOXM1 did not abolish stratification and differentiation of Kshp53 cells, it significantly rescued the proliferative potential lost by the absence of p53.
FOXM1 allows Kshp53 to proliferate in spite of genome instability
Loss of p53 induces early hyperactivation of the cell cycle that results in a G2/M block and endoreplication in human epidermal keratinocytes, subsequently increasing the population of differentiated polyploid cells.14 The analysis of cell cycle regulators suggested that Kshp53/FOXM1 cells did not accumulate as much in G2/M. Although the expression of the S/G2/M marker phospho-retinoblastoma (p-Rb) was increased in Kshp53 cells compared with controls, it was decreased upon FOXM1 overexpression (Figure 3a). Rb is hyperphosphorylated at entry in S phase and hypophosphorylated after cell division.29 FOXM1 induces Cyclin B among other mitosis/cytokinesis regulators20 to drive cell division. The expression of Cyclin B was reduced in Kshp53 cells and increased in Kshp53/FOXM1 (Figure 3a).14 However, the expression of Cyclin E and Cyclin A remained unchanged, suggesting that the main action of FOXM1 in keratinocytes takes place in mitosis. We also observed changes in the cell cycle 3 days after infection. Kshp53/FOXM1 cells showed a decrease in the percent of cells accumulated in G2/M and in the polyploid region (Figure 3b and Supplementary Figures 2a and b). Accordingly, the proportion of cells returning to G1 increased. DNA synthesis was also measured in these cells by 5-bromodeoxyuridine (BrdU) incorporation (Figure 3c and Supplementary Figure 2c). Similar to the changes observed in the cell cycle, the percent of Kshp53/FOXM1 cells bypassing mitosis into polyploidy was decreased and the percent of BrdU cells in G1/S phase increased as compared with Kshp53 cells. However, cultures carrying only the FOXM1 plasmid displayed an increase in the percent of BrdU-positive cells in G2/M (Supplementary Figure 2c). This suggests that FOXM1 and loss of p53 together accelerated the transition from G2/M to G1. Altogether, the results are consistent with a role of FOXM1 in potentiating keratinocyte cell division downstream of p53. Interestingly, although FOXM1 caused a decrease of polyploidy in Kshp53, yet the number of binucleated cells within the reduced polyploid population was increased (Figure 3d). This suggests that FOXM1 pushes nuclei to divide even when the cell cannot divide anymore, consistent with the role of FOXM1 in mitotic spindle assembly, chromosome alignment and nuclear division.20, 30 The expression of FOXM1 in normal human skin is unknown and we aimed to identify it. As shown in Figure 3e, FOXM1 strikingly accumulated in cells expressing mitotic Cyclins A and B, suggesting that the main function of FOXM1 in keratinocytes in the epidermis is related to mitosis.
It is worth noting that ectopic expression of FOXM1 reduced the intensity of nascent RNA foci as measured by incorporation of 5′-fluorouridine (Figure 3f). This suggests that FOXM1 function may have a relationship with the inhibition of transcription required for the initiation of mitosis. Therefore, we performed double labelling for Cyclin A, which accumulates mainly in G2/M, and transcription in these cells. The analyses showed that, as expected, in controls transcription was strong in Cyclin A-negative cells and weak in mitotic cells. However, transcription was as weak in interphasic, nonmitotic FOXM1-overexpressing cells (Supplementary Figure 3a). The role of FOXM1 in the inhibition of transcription has not been studied. FOXM1 gene encodes three different protein isoforms obtained by alternative splicing: FOXM1a, FOXM1b and FOXM1c.31 Although we have made used of a DNA construct bearing the FOXM1b isoform, involved in oncogenesis,32, 33 it has been shown that this protein can induce the expression of the other two variants34 (Supplementary Figure 3b). Whereas FOXM1b and FOXM1c are considered transcriptionally active, FOXM1a lacks the transactivation domain and has a negative regulatory function on transcription.31 The expression of the three isoforms might be important for the correct regulation of mitosis. Consistent with a global transcription decrease, we found that keratinocytes overexpressing FOXM1 displayed a lighter optical density (Supplementary Figure 3c). In addition, we observed FOXM1 in the nucleolus, centre of ribosomal RNA transcription (Supplementary Figure 3d). Nucleolar localisation has been previously proposed to have a FOXM1 inhibitory role.35
Kshp53/FOXM1 proliferative keratinocytes increased in size (measured by their forward scatter parameter), in spite of reduced cellular complexity (side scatter parameter; Figure 4a and Supplementary Figure 3e). Cells enlarge in G2 in order to produce two daughters of the same size before cell division, and therefore the mitosis block provokes differentiating keratinocytes to increase in size and this process is stimulated by shp53.14 The higher size of proliferative Kshp53/FOXM1 cells suggests that this protein pushes cell division even though the mitosis block has initiated.
The deregulation of the cell cycle in Kshp53 leads to the accumulation of DNA damage because of replication stress. We studied whether FOXM1, by alleviating the mitosis block, allowed keratinocytes to divide in spite of irreparable damage. Expression of the canonical DNA damage marker γH2AX36, 37 was evaluated in Kshp53/FOXM1 cells 5 days after gene delivery and we found a significant increase with respect to control cells (Figure 4b). In Kshp53 cells the increase in γH2AX was detected both in basal and differentiating keratinocytes according to light scatter parameters (Figure 4c and Supplementary Figure 4). However, in Kshp53/FOXM1 cells the accumulation of the γH2AX signal was detected mainly in the basal low scatter population (Figure 4c and Supplementary Figure 4). This result was confirmed by using shp53-2 (data not shown). To assess for actual DNA breaks typical of replication stress37 we performed comet assays. As shown in Figure 4d, inactivation of p53 caused a striking increase of DNA breaks that augmented even further in combination with FOXM1. Interestingly, Kshp53/FOXM1 cells augmented significantly the DNA breaks in smaller nuclei (<15 μm), typical of proliferative cells. These results suggest that ectopic expression of FOXM1 allowed damaged Kshp53 cells to keep dividing and amplifying.
Overexpression of FOXM1 drives MYC-induced differentiation into proliferation
In primary keratinocytes, the activation of MYC drives the cell cycle in 1–2 days and epidermal differentiation in 5–6 days.5, 12, 38 We infected human epidermal keratinocytes with a retroviral construct carrying a conditional form of human MYC (MYCER) whose protein product is regulated by 4-hydroxytamoxifen (OHT),39 and then infected them with the lentiviral construct bearing FOXM1. Cells expressing MYCER (KMYCER) differentiated when treated with OHT for 5 days (Figure 5a). The number of KMYCER cells collected after 5 days of OHT treatment was doubled when FOXM1 was ectopically expressed (Figure 5a and Supplementary Figure 5a). FOXM1 also significantly suppressed MYC-induced differentiation as monitored by the reduced expression of the squamous terminal marker keratin K1 (Figure 5a) and the decrease in light scattering (Figure 5a and Supplementary Figure 5b). We also observed that FOXM1 influenced the cell cycle parameters of KMYCER cells. Induction of MYCER with OHT drove keratinocytes into the polyploid compartment, whereas ectopic expression of FOXM1 significantly decreased the polyploid population (Figure 5a and Supplementary Figure 5c). The expression of cell cycle regulators Cyclin E, Cyclin A and Cyclin B was reduced in KMYCER treated with OHT 3 days, whereas phospho-Rb was inactivated (Figure 5b), consistent with mitotic block slippage.12 However, ectopic expression of FOXM1 in KMYCER cells recovered the expression of Cyclin E and the mitotic Cyclins A and B (Figure 5b). In addition, MYC deregulation causes replication stress and DNA damage14 and we observed a stronger accumulation of the DNA damage marker γH2AX when FOXM1 was overexpressed (Figure 5b and Supplementary Figure 5d). Consistently and as observed for shp53, in KMYCER small nuclei typical of proliferative cells contained strikingly more damage in comet assays when FOXM1 was overexpressed (Figure 5c and Supplementary Figure 5e).
FOXM1 also recovered the colony-forming potential of keratinocytes that is lost by MYC activation (Figure 5d).5 Overexpression of FOXM1 in KMYCER cells treated with OHT not only rescued the deleterious effect of MYC on colony growth, but also boosted this capacity beyond controls (Figure 5d and Supplementary Figure 5f).
Altogether, the results strongly indicate that FOXM1 switches the activation of the cell cycle by MYC from differentiation to proliferation in spite of increased replication stress and DNA damage.
Discussion
Induction of squamous differentiation in the epidermis by proto-oncogene MYC and other oncogenic molecules is a long standing paradox5, 6, 7, 8, 13 in spite of the important implications to squamous cancer. Clearly, MYC does not promote sustained cell division in keratinocytes. The finding that replication stress in keratinocytes triggers the mitosis checkpoints and in turn squamous differentiation (DMC) suggests that mitosis control might be the limiting factor in epidermal carcinogenesis.14 Our hypothesis was therefore that reinforcement of the mitosis machinery might inhibit differentiation and imbalance the keratinocyte decision making towards proliferation. Our present results upon ectopic expression of FOXM1 in keratinocytes strongly support this model.
FOXM1 controls a set of mitotic genes and has been proposed to be a mitosis master gene.30 FOXM1 promotes the transcription of genes linked to execution of mitosis and proper chromosome segregation.20, 30 Here we have shown that FOXM1 drives proliferation of keratinocytes, although cell cycle entry was barely affected. In contrast, the cell cycle shortened because of a shorter G2/M phase. In addition, we found FOXM1 to accumulate in mitotic keratinocytes in human epidermis.
Overexpression of FOXM1 in freshly isolated keratinocytes rescued the proliferative loss caused by inactivation of p53 or by hyperactivation of MYC. Keratinocytes overcame the DMC and continued to proliferate. Concomitantly, FOXM1 provoked a decrease in general transcription. Transcription is inactive during mitosis but very active during keratinocyte differentiation involving massive protein production. The lower level of nascent RNAs upon ectopic FOXM1 might be because of a transcription inhibitory function of a FOXM1 isoform31 contributing to coordinate the end of the S phase with mitosis. Possibly as a consequence of decreased global transcription, keratinocytes overexpressing FOXM1 displayed a clearer, less granulated and complex cytoplasm, reminiscent of ‘clear cell carcinomas' of poor prognosis, some of which have been associated with FOXM1 overexpression.40
Our results altogether support a key role of FOXM1 in driving epidermal cell division, consistent with observations in keratinocytes of oral epithelium.25 To note, we have recently shown that FOXM1 mediates the function of the epidermal growth factor receptor in keratinocyte proliferation.41 In our present study, although FOXM1 did not abolish differentiation, it did increase the proportion of binucleated cells within the remaining polyploid population, indicating that it pushed nuclear division even when cytokinesis was irreversibly blocked by terminal differentiation.
The results have implications in cancer beyond the role of FOXM1 in keratinocytes. The inhibition of squamous differentiation by this key mitotic regulator and the resulting imbalance in cell decision making supports a model where mitosis control (DMC) is critical in squamous homeostasis. We have shown that gain of MYC or loss of p53 provokes mitosis slippage and differentiation via DNA damage.14 The results herein show that FOXM1 overexpressing proliferative keratinocytes accumulate DNA damage. Altogether, the results suggest that ectopic FOXM1 by driving entry in mitosis shortens the repair G2 phase and prevents cells with irreparable damage to undergo terminal differentiation (Figure 6). This supports a role for the DMC as a protective mechanism against irreparable genetic damage5, 12, 13, 14 by which precancerous cells are eliminated by stratification and shedding.42 We have proposed that additional alterations in the DMC might render cells harbouring mutations in cell growth control (p53, MYC) capable to divide (Figure 6). As a consequence, precancerous cells would be selected for, leading to malignant transformation.14 This may explain why deregulation of p53 or MYC is frequently found in skin carcinomas, even though they are not considered initiators of cancer and they trigger the mitosis checkpoints.
In summary, FOXM1 drove the cell cycle deregulation caused by MYC or loss of p53 from differentiation into increased proliferation. In part, this process might be mediated by cell adhesion. In steady-state epidermis keratinocyte proliferation within the basal layer is tightly maintained by cell adhesion β4 or β1 integrin complexes.28 We found that ectopic FOXM1 in keratinocytes recovered the expression of β1 integrins upon the loss of p53. Integrin recovery might be a direct effect of FOXM1 or an indirect effect because of sustained proliferation. However, it is interesting that FOXM1 knockout mice suffered from severe abnormalities in lung development because of the downregulation of β1 integrins.43 Keratinocytes arrested in mitosis because of irreparable DNA damage might stratify by lateral pressure from more adherent proliferative neighbour cells (Figure 6).14 FOXM1 cells with a basal-like morphology and high integrin expression displayed a higher size and a higher level of DNA damage typical of the onset of differentiation. These results suggest that FOXM1 might drive cells that were committed to initiate differentiation into cell division. FOXM1 might raise the threshold of genetic damage allowed for keratinocytes to divide even when the mitotic checkpoints delay mitosis (Figure 6). As a result, FOXM1 would extend the number of cell divisions in a high genomic instability context. Interestingly, most squamous carcinomas of the skin and head and neck still conserve a differentiated component and we have evidence that this paradox might respond to alterations in mitosis control.44
In conclusion, in the context of overexpression of MYC or inactivation of p53, persistent expression of FOXM1 may result in the creation of a pool of genomically instable cells with the capacity to divide, even if they are committed to leave the basal layer of the epidermis. This may fix precancerous mutations and give rise to cell clones with malignant potential. These results support a model where the DMC is key in coordinating keratinocyte proliferation with differentiation. This novel checkpoint might exist in developmental tissues, particularly in those where mitotic slippage leads to polyploidy.13 A variety of mammalian tissues have been so far found to undergo endoreplication.45 Very recently, the greatly expanding mammary epithelium has been shown to become binucleated at lactancy.46 The challenge now is dissecting the DMC whose alterations might give rise to genome instability and cancer.
Materials and methods
Cell culture, plasmids and viral infections
Ethical permission for this study was requested, approved and obtained from the Ethical Committee for Clinical Research of Cantabria Council, Spain. In all cases, human tissue material discarded after surgery was obtained with written consent presented by clinicians to the patients, and it was treated anonymously.
Primary keratinocytes were isolated from neonatal human foreskin and cultured in the presence of a mouse fibroblast feeder layer (inactivated by mitomycin C) in Rheinwald FAD medium as described (10% serum and 1.2 mM Ca+2).5, 47 Low passages (1–4) of keratinocytes were utilised.
For gene delivery in primary keratinocytes the following constructs driven by constitutive promoters were used. (1) Retroviral: pBabe empty vector (CT-pb) and pBabe-MYCER;5, 14, 39 MYC fusion protein with the ligand binding domain of a mutant oestrogen receptor that responds to 4-OH-hydroxytamoxifen (OHT; Research Biochemicals International, Natick, MA, USA). (2) Lentiviral: empty plKO1 (CT1; Sigma-Aldrich, Inc., St Louis, MO, USA), empty pLVTHM-GFP (CT-GFP) and three different constructs coding for shRNAs against p53 with different target sequences: pLVUH-shp53-GFP (shp53-GFP), pLKO1-p53-shRNA-427 (shp53-1) and pLKO1-p53-shRNA-941 (shp53-2), all from Addgene (Cambridge, MA, USA);48 empty pLVX (CT2) and pLVX-FOXM1 (FOX).49
Lentiviral production was performed by transient transfection of 293T cells as previously described14 (see Supplementary Materials and methods). For infections with CT-pb, MYCER, CT2 and FOX, keratinocytes were cultured in FAD medium. After cell selection (CT-pb and MYCER) or confluency (CT2 and FOX), cells were transferred to low-calcium concentration medium (<0.1 mM; Keratinocyte Media 2, Promocell, Heidelberg, Germany), following the manufacturer's instructions, and lentiviral infections with CT2 and FOX or CT1 and shp53 plasmids respectively were performed. MYCER was activated by addition of 100 nM OHT (Sigma-Aldrich, Inc.) to the culture medium 24 h after the infection with CT2 or FOX for the periods of time indicated. When necessary, MYCER cells were cultured in high calcium medium after infection with CT2 and FOX by adding CaCl2 (1.2 mM) in order to allow stratification.
Clonogenicity assays were made as described previously24 (see also Supplementary Materials and methods). Quantitation of cell shedding was measured by counting cells detached into the culture medium. Data were obtained from duplicate samples and normalised to controls.
Antibodies
Primary and secondary antibodies utilised in this study are listed in Supplementary Materials and methods.
Flow cytometry
Keratinocytes were harvested, fixed and stained for DNA synthesis, involucrin and keratin K1 as previously described.14 All antibody stainings were controlled by the use of similar concentration of isotype-negative immunoglobulins (mouse or rabbit serum). After staining, cells were firmly resuspended and filtered through a 70 μM mesh to minimise the presence of aggregates and then analysed on a Becton Dickinson FACSCanto (Franklin Lakes, NJ, USA). A total of 10 000 events were gated and acquired.
Immunodetection
For immunofluorescence, keratinocytes were grown on glass coverslips, fixed and stained as previously described.12 For determination of protein expression, cells were washed with phosphate-buffered saline, lysed and subjected to SDS–PAGE electrophoresis and western blotting as previously described.12
Real-time PCR
Total RNA was isolated and reverse-transcribed using NucleoSpin RNA (Macherey-Nagel, Düren, Germany) and the iScript cDNA synthesis kit (Bio-Rad, Hercules, CA, USA) according to the manufacturer's instructions. The cDNAs (2 μl) were amplified by real-time PCR (Bio-Rad iQ SYBR Green supermix) and normalised to β-actin mRNA levels. Primers utilised in this study are listed in Supplementary Materials and methods.
Run-on transcription assay and comet assay
For immunodetection of nascent RNA, primary keratinocytes were cultured for 20' with 5'-fluorouridine (Sigma-Aldrich, Inc.), as described in Rosa-Garrido et al.50 (see Supplementary Materials and Methods).
Alkaline comet assays were performed as described previously.51 A visual score related to the level of DNA damage observed was assigned to each tail. Scoring was performed by blind counting.
Confocal microscopy
For Supplementary Video 1, keratinocytes were grown on glass coverslips, fixed and stained as previously described.14 Z-stack 3D digital images were reconstructed after frame collection by confocal microscopy (Nikon A1R, Melville, NY, USA; 20 × numerical aperture (NA) 0.75) and processed by NIS Elements software (AR, 3.2 64 bits; Nikon) as indicated in the legend of Supplementary Video 1.
Time-lapse videos
For Supplementary Video 2, keratinocytes 5 days after infection were treated with NucBlue Live ReadyProbes Reagent (Life Technologies, Carlsbad, CA, USA), filmed by time-lapse imaging for 12 h and photographed every 7 min.
Statistical analyses
Results were obtained with two different keratinocyte strains from different individuals (N=2). Data are average of triplicate samples of representative experiments (n=3). Exclusion of samples was carried out based on the appearance of the negative control sample. Standard deviation and variance were calculated and served as estimates of variation within each group of data. For statistical comparison of groups with similar variance, a homoscedastic t-test was performed. For statistical comparison of groups with diverging variance, a heteroscedastic t-test was applied. A P-value of <0.05 was considered statistically significant.
Acknowledgments
This work was funded by Instituto de Salud Carlos III ISCIII FIS/FEDER Grants PI11/02070 and PI14/00900 (to AG) and National Institutes of Health, NIH Awards R03 AR049420 (to SWS) and R01 AR052889 (to JTE).
Footnotes
Supplementary Information accompanies this paper on the Oncogene website (http://www.nature.com/onc)
The authors declare no conflict of interest.
Supplementary Material
References
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