Uranium XAFS analysis of kidney from rats exposed to uranium

Characterization of uranium accumulated in the micro-regions of renal tubules of rats exposed to uranyl acetate was examined by micro-X-ray absorption fine-structure analysis and the results showed the possible biotransformation of uranium in this in vivo system.

Abstract

The kidney is the critical target of uranium exposure because uranium accumulates in the proximal tubules and causes tubular damage, but the chemical nature of uranium in kidney, such as its chemical status in the toxic target site, is poorly understood. Micro-X-ray absorption fine-structure (µXAFS) analysis was used to examine renal thin sections of rats exposed to uranyl acetate. The U L _III-edge X-ray absorption near-edge structure spectra of bulk renal specimens obtained at various toxicological phases were similar to that of uranyl acetate: their edge position did not shift compared with that of uranyl acetate (17.175 keV) although the peak widths for some kidney specimens were slightly narrowed. µXAFS measurements of spots of concentrated uranium in the micro-regions of the proximal tubules showed that the edge jump slightly shifted to lower energy. The results suggest that most uranium accumulated in kidney was uranium (VI) but a portion might have been biotransformed in rats exposed to uranyl acetate.

1. Introduction  

Uranium is an element in the earth’s crust and is found widely in the natural environment. The levels of uranium in surface water and groundwater are generally low (about 0.003–0.1 ppb; Uchida et al., 2006 ▸), but some areas, such as northern Europe (Kurttio et al., 2002 ▸; Seldén et al., 2009 ▸) and North America (Mao et al., 1995 ▸; Magdo et al., 2007 ▸), contain high levels of uranium in groundwater (several ppb to several ppm). The health effects of chronic ingestion of uranium via groundwater cannot be ignored in these areas because the ingestion of uranium at high environmental levels can induce kidney dysfunction (Magdo et al., 2007 ▸). Depleted uranium produced as a by-product in the manufacture of nuclear fuel was used in weapons during the Gulf wars of the 1990s (McDiarmid et al., 2004 ▸). This depleted uranium continues to contaminate these areas and thus the inhabitants are in danger of long-term exposure to uranium. Uranium enters the body and forms the complex uranyl hydrogencarbonate in blood, which diffuses throughout the body and then accumulates in kidney, bone and liver (Moss, 1985 ▸). The kidney is the critical target for uranium toxicity (Leggett, 1989 ▸). Uranium-induced renal toxicity is characterized by renal tubule damage (Leggett, 1989 ▸; Fujigaki et al., 2006 ▸) similar to that caused by hazardous heavy metals such as mercury (Homma-Takeda et al., 1999 ▸) and cadmium (Ishido et al., 1998 ▸). However, details regarding the toxic mechanism, and particularly information about the chemical status of uranium at the toxic target site in kidney, require further investigation.

Uranium minerals contain both tetravalent and hexavalent uranium. The reduction of uranium (VI) to uranium (IV) was studied using mackinawite, a reduced iron (II) mono­sulfide (FeS); under anoxic conditions, mackinawite reacted with dissolved uranium (VI) to form surface complexes of uranium (IV) (Gallegos et al., 2013 ▸). The bioreduction of uranium by a wide variety of bacteria has been documented (Anderson et al., 2003 ▸; O’Loughlin et al., 2003 ▸; Suzuki et al., 2003 ▸; Francis & Dodge, 2008 ▸). Uranium (VI) may be reduced in the body (George et al., 2011 ▸), but uranium (IV) has not been identified in mammalian tissues to date. If uranium (VI) is reduced to uranium (IV), for example, uranium could easily precipitate or form stable ionic species. The resulting change in uranium valence could result in its interaction with biological molecules, especially in the target site in the kidney. Accordingly, understanding the mechanism of uranium toxicity requires identifying the chemical form of uranium in the kidney.

We recently used synchrotron radiation X-ray fluorescence analysis with a microprobe to reveal the site-specific accumulation of uranium in micro-regions of renal tubules after exposure of rats to uranium (Homma-Takeda et al., 2015 ▸). In the present study, we attempted micro-X-ray absorption fine-structure (µXAFS) measurements of rat kidney specimens to characterize the uranium species concentrated in micro-regions of renal tubules, in addition to X-ray absorption fine-structure (XAFS) measurements of bulk rat kidney.

2. Materials and methods  

2.1. Animals and treatments  

Wistar male adult rats (9 weeks old) were obtained from CLEA Japan (Tokyo, Japan). The animals were acclimated to the controlled temperature (22 ± 2°C), humidity (50 ± 10%) and day/night cycle environment (light 07:00–19:00 h) for 1 week before initiating the study. Uranyl acetate (TAAB Laboratories Equipment Ltd., Aldermaston, UK) was dissolved in saline and administered to the animals by subcutaneous injection at 0.5 mg kg⁻¹ body weight at 10 weeks of age. For experiments involving prepubertal animals, Wistar female rats (day 19 of gestation; CLEA Japan) were obtained and litters were culled to six pups (male) per dam at two days after birth. Uranyl acetate was administered to the animals at 25 days (weaning at 22 days). The animals were sacrificed at 1, 3 or 15 days after administration and the kidneys were removed (n = 3 per time point per group). The animals were treated according to the ‘Guide for the Care and Use of Laboratory Animals in the National Institute of Radiological Sciences’, Japan.

2.2. Sample preparation  

2.2.1. Preparation of renal specimens  

One kidney removed from each rat was fixed in 10% neutral-buffered formalin and embedded in paraffin, then cut into 2 mm-thick slices with a microtome.

The other kidney was divided in half. One half was immediately embedded in optimal cutting temperature compound (OTC) and frozen in liquid nitrogen, then cut into 10 µm- or 50 µm-thick slices with a cryo-microtome and placed on polypropyl­ene film. Serial sections were placed on slides and stained with hematoxylin and eosin (HE) to distinguish the nephron unit using an optical microscope.

A portion of the center area (100 mg) of the other half of the kidney was digested with 0.5 ml of nitric acid at 90°C for 30 min using a microwave oven. The digest was diluted with ultrapure water and used for quantitative analysis of the uranium concentration using inductively coupled plasma-mass spectrometry (ICP-MS) (Model SPQ9700, Seiko Instruments Inc., Japan).

2.2.2. Preparation of uranium standards for XAFS analyses  

Uranium adsorbed on cellulose phosphate resin (Whatman International Ltd, UK) and seven types of metal scavengers on silicate particles (SiliaMetS, SiliCycle Inc., Canada) were prepared as standard materials for XAFS analyses. Each metal scavenger consisted of silicate particles with a surface functional group: silicate particles with ethyl­enedi­amine­tetra­acetic acid (Si-TAAcOH), imidazol (Si-Imidazole), amine (Si-Amine), 2,4,6,-trimercaptotriazine (Si-DMT), cysteine (Si-Cysteine), thio­urea (Si-Thio­urea) and thiol (Si-Thiol). Uranyl acetate was incubated with the functionalized cellulose resin or silicate particles under biological conditions. Briefly, the uranium reaction solution was prepared by adding 0.042 mol L⁻¹ uranyl acetate and 0.010 mol L⁻¹ NaHCO₃ to 0.10 mol L⁻¹ Tris buffer solution (pH 7.4). The molar amount of uranium in the reaction solution was three times the molar concentration of functional group in 5 mg of each functionalized particle. The functionalized particles were incubated with the uranium reaction solution for 1 min, centrifuged for 5 min at 12000g, and then the supernatants were removed. The concentration of bound uranium was determined by ICP-MS. The remaining particles were washed three times with 0.010 mol L⁻¹ NaHCO₃/0.1 mol L⁻¹ Tris buffer solution, freeze-dried, and then thinly coated onto a piece of scotch tape for XAFS analysis.

2.3. µSR-XRF analysis  

Synchrotron radiation induced micro-X-ray fluorescence (µSR-XRF) measurements of the two-dimensional distribution of uranium in kidney were carried out at BL37XU, SPring-8, Japan Synchrotron Radiation Research Institute, using an energy-dispersive SR-XRF system (Terada et al., 2010 ▸). The X-ray beam was focused onto a 1.2 µm × 1.0 µm beam with a Kirkpatrick–Baez mirror and was monochromated using a Si(111) double-crystal monochromator to 30 keV. Uranium concentration mapping was conducted by moving the sample stage in the X–Z direction and each point of the uranium Lβ (renal endogenous rubidium interfered from detection of the uranium Lα line) fluorescence signal (peak width = 16.1–17.6 keV) was collected with a germanium solid-state detector. The obtained elemental maps were colored from deep blue to red, and classified into 256 from the lower detection limit up to the maximum concentration in linear proportion to the element concentration. The uranium concentration range in the images was calculated using thin uranium standards for microbeam analysis (10 µm; 0–500 µg g⁻¹) developed in our laboratory (Homma-Takeda et al., 2009a ▸). The standards were analyzed under the same conditions as the samples.

2.4. XAFS analysis  

U L _III-edge (17.166 keV) XAFS measurements of the bulk kidney specimens were carried out at BL01B1, SPring-8. The X-ray beam (1.0 mm × 0.2 mm) was monochromated using a Si(111) double-crystal monochromator. The incident beam intensity was detected using an ion chamber and the fluorescence yield of U Lα was detected with a 19-element germanium solid-state detector. Prior to the U L _III-edge XAFS measurements, we scanned the kidney specimens using the X-ray beam and collected the U Lα fluorescence signal. XAFS measurements were performed at the point providing the highest signal intensity.

U L _III-edge µXAFS measurements of the kidney thin sections were carried out at BL37XU, SPring-8. Spectra were recorded in fluorescence mode. The measurement conditions were the same as the SR-XRF measurement conditions, except that the incident X-ray energy was 17.120–17.250 keV. The U Lα distribution map of a kidney thin section specimen was measured using a 17.250 keV X-ray beam. The points showing the highest X-ray intensity were subjected to XAFS measurements. The XAFS spectrum of uranyl acetate powder was measured as a reference sample. XAFS analyses were performed using the XAFS data processing software REX2000 (Rigaku Co., Japan).

3. Results and discussion  

3.1. XAFS analysis of comparative samples  

The concentrations of uranium bound to the functionalized resin or particles were above 15000 µg g⁻¹ (Table 1 ▸). X-ray absorption near-edge structure (XANES) spectra of the standard uranium compounds are shown in Fig. 1 ▸. The XANES spectrum of uranyl acetate showed good agreement with a previous report of the XANES spectra of hexavalent uranyl (UO₂ ²⁺), with a peak top at 17.175 keV and a shoulder peak at 17.190 keV. These features are due to the short bond between uranium and the axial oxygen atoms in the UO₂ ²⁺ unit (U—O_ax) (Sylwester et al., 2000 ▸). The shapes and peak tops of the XANES spectra of uranium bound to the functionalized resin or particles were similar to those of uranyl acetate. The κ³-weighted EXAFS spectra and their corresponding radial distribution functions calculated by Fourier transformation (FT) are shown in Fig. 2 ▸. The κ³-weighted EXAFS spectra of all comparative samples showed good agreement with each other in frequency and amplitude of EXAFS oscillations. The oscillation patterns were not complex and might be caused by U—O interaction mainly, and U—U interaction would be very weak. Two major peaks were observed for uranyl acetate, around 1.4 and 1.8 Å, and are believed to arise from the axial oxygen atoms of U—O_ax and from oxygen atoms of the carboxyl group in the equatorial plane (U—O_eq). No information regarding the third coordination was obtained because the X-rays were highly scattered during measurements in fluorescence mode. The peak from U—O_ax was observed from all comparative samples. The coordination number was assumed to be U—O_ax = 2 and the bond distance was determined to be in the range 1.76–1.82 Å (Table 2 ▸). These results were in agreement with a previous report of the inter-atomic distances in U—O_ax (Uehara et al., 2016 ▸), suggesting that hexavalent UO₂ ²⁺ bound to the functionalized cellulose resin or silicate particles. The particles with bound uranium might be useful as comparative samples in which the bound UO₂ ²⁺ reacts with various biological ligands.

Table 1. Uranium concentrations of the uranium-bound functionalized particles.

Sample	Uranium concentration (µg g−1)
Cellulose phosphate	15970
Si-TAAcOH	149000
Si-Cysteine	77640
Si-Amine	37400
Si-DMT	87530
Si-Imidazole	74440
Si-Thiol	22500

Figure 1.

Uranium L _III-edge XANES spectra of the comparative samples. The spectra were normalized to equal intensity at 17250 eV.

Figure 2.

U L _III-edge κ³-weighted EXAFS data (a) and the corresponding Fourier transforms (b).

Table 2. EXAFS structural parameters of the comparative samples.

Errors in distances are ±0.02 Å. Errors in coordination numbers are ±25% and standard deviations as estimated by EXAFSPAK are given in brackets.

Sample	Shell	N	R (Å)	Debye–Wallerfactor (Å2)	R-factor (%)
(CH3COO)2UO2	Oax	2	1.76 (1)	0.06 (1)	2.49
	Oaq	2.68 (1)	2.38 (4)	0.01 (1)
Cellulose phosphate	Oax	2	1.79 (1)	0.03 (1)	0.29
	Oaq	3.32 (1)	2.29 (2)	0.07 (0)
Si-TAAcOH	Oax	2	1.80 (1)	0.04 (1)	1.72
	Oaq	4.63 (4)	2.20 (1)	0.15 (0)
Si-Cysteine	Oax	2	1.79 (1)	0.09 (1)	0.07
	Oaq	2.08 (1)	2.11 (3)	0.08 (0)
Si-Amine	Oax	2	1.81 (1)	0.04 (1)	0.07
	N	3.34 (2)	2.38 (7)	0.01 (0)
Si-DMT	Oax	2	1.80 (1)	0.07 (2)	0.18
	N	2.12 (2)	2.19 (4)	0.06 (0)
Si-Imidazole	Oax	2	1.82 (1)	0.07 (2)	2.36
	N	2.83 (1)	2.13 (3)	0.06 (0)
Si-Thiol	Oax	2	1.80 (1)	0.02 (3)	0.94
	S	1.96 (1)	2.50 (2)	0.01 (0)

3.2. XAFS analysis of bulk rat kidney  

Subcutaneous injection of uranyl acetate to rats (0.5 mg kg⁻¹ of body weight) results in renal tubular damage, with the number of proximal tubules containing apoptotic cells increasing on day 2 post-injection, cell deletion from tubules reaching a maximum on day 8, and the appearance of recovery morphology on day 15 (Homma-Takeda et al., 2013 ▸). Higher doses of uranium accelerate renal toxicity and uranium accumulation to kidney (Homma-Takeda et al., 2009b ▸, 2013 ▸). In the present study, kidney specimens from rats at the initial phase (day 1 post-injection), the middle phase (onset of toxicity, day 3 post-injection) and the late phase (beginning of recovery, day 15 post-injection) of uranium exposure at high (2 mg kg⁻¹ of body weight) and low (0.5 mg kg⁻¹ of body weight) doses were subjected to XAFS analysis. The mean renal uranium concentrations (mass of uranium per gram of tissue, µg g⁻¹) of these rats are shown in Table 3 ▸.

Table 3. Mean renal uranium concentrations after uranyl acetate administration (mean ± standard deviation for three animals).

		Adult			Prepubertal
Days after administration	Phase of toxicity	Low dose (0.5 mg kg−1)	High dose (2 mg kg−1)		Low dose (0.5 mg kg−1)	High dose (2 mg kg−1)
1	Initial	12.2 ± 0.9	42.6 ± 2.3		7.23 ± 1.99	22.7 ± 0.5
3	Middle	8.90 ± 1.14	31.5 ± 2.9		3.47 ± 0.35	9.79 ± 0.44
15	Late	3.02 ± 0.33	18.6 ± 1.6		–	–

The optimum conditions and thicknesses of kidney specimens for analysis were identified by measuring XAFS spectra of the paraffin (2 mm) and cryo-sections (10 and 50 µm). The paraffin sections provided indistinct spectra and the absorption edge of the U L _III-edge was indeterminate due to X-rays scattering from the paraffin medium. The U L _III-edge from the 10 µm-thick and 50 µm-thick cryo-sections were clear and thus we used the 10 µm-thick cryo-sections for further XAFS analysis.

The U L _III-edge XANES spectra of bulk kidney renal specimens obtained at various toxicological phases are shown in Fig. 3 ▸. The mean renal uranium concentrations of these specimens were in the range 10.2–34.4 µg g⁻¹ and depended on the dose administered and the toxicological phase at which the kidney was obtained. The U L _III-edge positions for all kidney specimens were the same as the edge position of uranyl acetate, while the peak widths for kidney specimens from the initial and middle phases for adult [Figs. 3(b) and 3(c) ▸] and prepubertal rats [Fig. 3(a) ▸] were slightly narrower. It was previously demonstrated that the edge jump for uranium (IV) shifts slightly to lower energy and the peak widths decrease compared with those of uranium (VI) (Kalkowski et al., 1986 ▸; Uehara et al., 2016 ▸). Our results indicate the possible presence of small amounts of uranium mixed chemical forms, although most of the uranium accumulated in kidney was hexavalent UO₂ ²⁺ at all toxicological phases, irrespective of the age of the rat.

Figure 3.

Uranium L _III-edge XANES spectra of rat kidney by bulk kidney measurements. (a) Renal section from a prepubartal rat at the middle phase after uranium exposure at the high dose (day 3 post-injection, 2 mg kg⁻¹ body weight). (b–d) Renal section from an adult rat at the initial phase at the low dose [(b) day 1 post-injection, 0.5 mg kg⁻¹ body weight], the middle phase [(c) day 3 post-injection] and the late phase [(d) day 15 post-injection] at the high dose (2 mg kg⁻¹ body weight). The mean renal uranium concentrations of (a), (b), (c) and (d) were 10.2 µg g⁻¹, 12.9 µg g⁻¹, 34.4 µg g⁻¹ and 17.5 µg g⁻¹, respectively.

Uranium administration to rats results in site-specific accumulation of uranium in the S3 segment of the renal proximal tubules in kidney (Homma-Takeda et al., 2009b ▸, 2013 ▸). Highly concentrated uranium, with a maximum uranium concentration 50-fold higher than the mean renal uranium concentration, was observed in micro-regions near the nuclei of cells in the S3 segments (Homma-Takeda et al., 2015 ▸). Microbeam irradiation of the uranium concentrated area would provide clear XAFS spectra without interference from scattered X-rays and thus the concentrated uranium in the S3 segment of the proximal tubules was studied by µXAFS analysis.

3.3. µXAFS analysis of concentrated uranium in renal tubules  

Fig. 4 ▸ shows the uranium distribution in an adult rat kidney cross section obtained at the middle phase after exposure to the low uranium dose (0.5 mg kg⁻¹ of body weight). The analyzed area shown in Fig. 4(c) ▸ corresponds to the diagram in Fig. 4(a) ▸ and extends from the outer stripe of the outer medulla to the periphery of the renal cortex. Uranium was detected in the inner cortex and the outer stripe of the outer medulla. The boxed area in Fig. 4(c) ▸, in which most of the renal tubules were in the S3 segment of the proximal tubules, was analyzed at high resolution (Fig. 4e ▸). Spots of concentrated uranium were scattered in the proximal tubules, with a maximum uranium concentration of around 1000 µg g⁻¹ of tissue. The boxed area in Fig. 4(e) ▸ was further analyzed at higher resolution [Fig. 4(g) ▸] and spots of concentrated uranium were found in the epithelium of the proximal tubules. The first- and second-highest uranium concentrated spots [a and b in Fig. 4(g) ▸], located in the epithelium of the same tubule, were subjected to µXAFS measurements. The uranium levels at positions a and b were 1114 µg g⁻¹ and 948 µg g⁻¹, respectively.

Figure 4.

Uranium distribution in kidney and uranium L _III-edge XANES spectra of spots of concentrated uranium in the proximal tubules. The renal section was obtained from an adult rat at the middle phase after uranium exposure at the low dose (day 3 post-injection, 0.5 mg kg⁻¹ body weight). (a) Diagram of the analyzed area of the renal specimen. (b, d, f) Serial-section stained using hematoxylin and eosin. (c) Uranium imaging (150 × 50 steps at 20 µm per step, beam size 1 µm × 1 µm). (e) High-resolution uranium imaging of the boxed area in (b) and (c) (100 × 50 steps at 10 µm per step, beam size 1 µm × 1 µm). (g) High-resolution uranium imaging of the boxed area in (d) and (e) (75 × 75 steps at 2 µm per step, beam size 1 µm × 1 µm). Here, point a indicates the first-highest uranium concentrated spot (1114 µg g⁻¹) and point b indicates the second-highest uranium concentrated spot (948 µg g⁻¹) in the analysed area. The periphery of the renal cortex in all images is shown on the right-hand side. The mean renal uranium concentration was 8.46 µg g⁻¹. (h) Uranium L _III-edge XANES spectra of spots of concentrated uranium; graph a is for position a and graph b is for position b in panel (g).

The spectral shape and energy position of the peak top for position b were almost the same as those for uranyl acetate [Fig. 4(h) ▸], whereas the XANES spectrum of position a showed a slight negative chemical shift from 17.175 keV to 17.174 keV. It has been reported that reduction of uranium (VI) to (V) or (IV) results in a slight shift of the edge jump at 1–2 eV (Kalkowski et al., 1986 ▸; Uehara et al., 2016 ▸), indicating the possibility of bioreduction of uranium in rats exposed to uranyl acetate. The chemical shift was also observed in other cases, such as adult rats at middle or late phases (data not shown). The induction of oxidative stress after uranium exposure, for example due to the production of reactive oxygen species (Thiébault et al., 2007 ▸) or lipid peroxidation (Linares et al., 2006 ▸), and alterations in the expression of genes related to oxidative stress (Taulan et al., 2004 ▸, 2006 ▸), have been demonstrated in both in vitro and in vivo systems. The reduction of uranium (VI) in the toxic target site in kidney therefore appears to be a key determinant of uranium renal toxicity. In this regard, studies with not only uranium (VI) but also uranium (V) or (IV) compounds as comparative samples will be required to evaluate the reduction status of uranium in kidney.

4. Conclusion  

We analyzed thin sections of kidney from rats exposed to uranyl acetate using µXAFS and observed differences in the chemical status of uranium in spots of concentrated uranium in micro-regions of the proximal tubules. The data suggest that uranium in the proximal tubules might be partially reduced, although the valence of most uranium accumulated in kidney remained unchanged. Understanding uranium renal toxicity requires understanding the bioreduction of uranium in kidney because oxidative stress may mediate uranium toxicity. Therefore, in situ µXAFS of renal sections is a useful technique for the study of uranium toxicity.