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. 2016 Sep 15;7(45):73618–73637. doi: 10.18632/oncotarget.12037

Table 2. List of selected gene expression assays used for configuring the Taqman low-density array cards.

Gene symbol Assay reference Gene name
Endogenous genes
18S Hs99999901_s1 -
GAPDH Hs99999905_m1 glyceraldehyde-3-phosphate dehydrogenase
PI3K/AKT and RAS/MAPK signaling pathways
EGFR Hs01076078_m1 epidermal growth factor receptor
IGF1R Hs00609566_m1 insulin-like growth factor 1 receptor
MET Hs00179845_m1 met proto-oncogene
HER3 Hs00176538_m1 human epidermal growth factor receptor 3
PIK3CA Hs00180679_m1 phosphatidylinositol-4.5-bisphosphate 3-kinase. catalytic subunit alpha
PTEN Hs00829813_s1 phosphatase and tensin homolog
AKT1 Hs00178289_m1 v-akt murine thymoma viral oncogene homolog 1
MTOR Hs00234508_m1 mechanistic target of rapamycin (serine/threonine kinase)
BRAF Hs00269944_m1 v-raf murine sarcoma viral oncogene homolog B
KRAS Hs00364282_m1 Kirsten rat sarcoma viral oncogene homolog
MAPK1 Hs01046830_m1 mitogen-activated protein kinase 1
MAPK3 Hs00385075_m1 mitogen-activated protein kinase 3
FOS Hs00170630_m1 FBJ murine osteosarcoma viral oncogene homolog
MYC Hs00153408_m1 v-myc avian myelocytomatosis viral oncogene homolog
Cell cycle control
E2F1 Hs00153451_m1 E2F transcription factor 1
CDK2 Hs01548894_m1 cyclin-dependent kinase 2
CDK4 Hs00175935_m1 cyclin-dependent kinase 4
CDK6 Hs01026372_m1 cyclin-dependent kinase 6
CDKN1A Hs00355782_m1 cyclin-dependent kinase inhibitor 1A
CDKN2A Hs00923893_m1 cyclin-dependent kinase inhibitor 2A
CDKN1B Hs00153277_m1 cyclin-dependent kinase inhibitor 1B
CDKN1C Hs00175938_m1 cyclin-dependent kinase inhibitor 1C
CCNA1 Hs00171105_m1 cyclin A1
CCNB1 Hs99999188_m1 cyclin B1
CCND1 Hs00277039_m1 cyclin D1
CCNE1 Hs00233356_m1 cyclin E1
CHEK1 Hs00967506_m1 checkpoint kinase 1
CHEK2 Hs00200485_m1 checkpoint kinase 2
RB1 Hs01078066_m1 retinoblastoma 1
TP53 Hs99999147_m1 tumor protein p53
Apoptosis
BAX Hs00180269_m1 BCL2-associated X protein
BCL2 Hs00608023_m1 B-cell CLL/lymphoma 2
CASP8 Hs01018151_m1 caspase 8
CASP9 Hs00154260_m1 caspase 9
CASP3 Hs00234387_m1 caspase 3
XIAP Hs00745222_s1 X-linked inhibitor of apoptosis
Angiogenesis
NOS2 Hs01075529_m1 nitric oxide synthase 2. inducible
CDH1 Hs01023894_m1 cadherin 1, type 1, E-cadherin (epithelial)
PLAU Hs01547054_m1 plasminogen activator. urokinase
VEGF Hs00900055_m1 vascular endothelial growth factor A
MMP9 Hs00234579_m1 matrix metallopeptidase 9
DNA repair
BRCA1 Hs00173237_m1 breast cancer 1
PARP1 Hs00242302_m1 poly (ADP-ribose) polymerase 1
PARP2 Hs00193931_m1 poly (ADP-ribose) polymerase 2
Drug resistance
ABCB1 Hs00184491_m1 ATP-binding cassette, sub-family B (MDR/TAP), member 1
ABCG2 Hs00184979_m1 ATP-binding cassette, sub-family G (BCRP1), member 2