Erratum
Upon publication of this article [1], it was brought to our attention that the online version of Table 8 contained an error. The correct Table 8 is shown below:
Table 8.
Biological networks used to experimentally assess BicPAMS
| Type | Source | Organism | ♯Nodes | ♯Interactions | Density | Notes on the weight of interactions |
|---|---|---|---|---|---|---|
| GI (gene interactions) | DryGIN | Yeast | 4455 | 191309 | 1.0% | Weights (65% negative) from double-mutant arrays [36]. |
| GI (gene interactions) | STRING | Yeast | 6314 | 3759902 | 1.1% | Known and predicted associations benchmarked from multiple data sources and literature (text mining), and combined through an integrative score [37]. |
| PPI (protein interactions) | STRING | E. Coli | 8428 | 3293416 | 4.6% | |
| PPI (protein interactions) | STRING | Human | 19247 | 8548002 | 2.3% |
Table 8 has been corrected in the original article.
Footnotes
The online version of the original article can be found under doi:10.1186/s12859-017-1493-3.
Contributor Information
Rui Henriques, Email: rmch@tecnico.ulisboa.pt.
Sara C. Madeira, Email: sara.madeira@tecnico.ulisboa.pt
Reference
- 1.Henriques R, et al. BicPAMS: software for biological data analysis with pattern-based biclustering. BMC Bioinformatics. 2017;18:82. doi: 10.1186/s12859-017-1493-3. [DOI] [PMC free article] [PubMed] [Google Scholar]