Table 1. Spearman's rank correlation of miR expression obtained with sequencing platform and progression free survival values that were statistically significant (p<0.05) with all three normalization methods: normalization via sum of reads (SOR), quantile normalization (Q) and DESeq2-normalization (DESeq2).
Spearmans rank correlation | ||||||
---|---|---|---|---|---|---|
SOR | Q | DESeq2 | ||||
correlation | p value | correlation | p value | correlation | p value | |
hsa-miR-301a-3p | −0.6907 | 0.0008 | −0.5824 | 0.0143 | −0.5413 | 0.0291 |
hsa-miR-423-5p | −0.6332 | 0.0016 | −0.6230 | 0.0057 | −0.5783 | 0.0169 |
hsa-miR-501-3p | 0.4968 | 0.0187 | 0.5547 | 0.0193 | 0.5349 | 0.0318 |
hsa-miR-100-5p | 0.5614 | 0.0082 | 0.5648 | 0.0181 | 0.5325 | 0.0318 |
hsa-miR-99b-5p | 0.6465 | 0.0016 | 0.6836 | 0.0011 | 0.6431 | 0.0062 |
All presented miRs passed the filter of 5 reads (SOR and Q) or on average 1 read (DESseq2) for all samples. Values below 0 indicate negative correlation (the higher PFS the lower miR expression), whereas correlation >0 prove that miR expression increases with PFS values (positive correlation).