The single-crystal X-ray diffraction investigation of a substituted quinoline derivative, which may serve as a basis for the development of a family of cytotoxic agents, confirms the anticipated covalent structure with an unusual twisted conformation and reveals a densely packed molecular lattice.
Keywords: crystal structure, cytotoxic agents, N-substituted quinolone, tubulin polymerization, hydrogen bonding
Abstract
The protein tubulin is central for maintaining normal cellular processes, and molecules interfering with the tubulin dynamics have potential in the treatment of cancerous diseases. The title compound, C17H14N2O5, was prepared as a lead compound in a project dedicated to the development of therapeutic agents binding to the colchicine binding site on tubulin, thereby interfering with the cell division in cancer cells. It holds many of the main structural characteristics for colchicine binding and has the potential for further modification and functionalization. In the title molecule, the benzene ring is inclined to the quinoline ring by 76.10 (8)°. In the crystal, molecules are linked by two pairs of C—H⋯O hydrogen bonds, forming tubular-like arrangements, propagating along the direction of the diagonals of the ab plane, and enclosing R 2 2(26) and R 2 2(16) ring motifs.
Chemical context
Due to the elevated rate of cell division in cancer cells, agents targeting proteins central to the mitotic process are attractive for cancer treatment (Hanahan & Weinberg, 2011 ▸). The protein tubulin polymerizes during the mitotic phase into microtubules, and this process is vital for the correct cell division (Parker et al., 2014 ▸). Based on the structures of the natural products colchicine and comberastatin A-4, a great amount of research on the synthesis and biological evaluation has been carried out (Lu et al., 2012 ▸). All these analogs bind to the colchicine binding site, and the pharmacophore and binding site is well known (Nguyen et al., 2005 ▸).
Despite large research efforts, many colchicine-binding drug candidates suffer from resistance and toxicity problems (Lu et al., 2012 ▸). Therefore, further exploration and biological evaluation of possible structures is needed. From another medicinal chemistry project in our group, the title compound, (I), appeared as a side product in significant amounts. The structure was rationalized from NMR studies and confirmed by X-ray crystallography. Based on the literature and knowledge of the characteristics of molecules binding to the colchicine binding site on tubulin, it is reasonable that analogs of this structure might be potent cytotoxic agents. The reported structure can easily be further modified to improve binding affinities in correspondence with reported structure–activity studies (Lai et al., 2011 ▸; Wang et al., 2013 ▸; Patil et al., 2012 ▸). Herein, we present the synthesis and the crystal structure of the title compound, 6,7-dimethoxy-1-(4-nitrophenyl)quinolin-4(1H)-one (I).
Database survey
The frequencies of molecules in the Cambridge Structural Database (CSD, version 5.37; Groom et al., 2016 ▸) incorporating various modifications of the quinolin-4(1H)-one fragment are shown in Fig. 1 ▸ b. It can be seen that only one previous compound, 4-[6-methoxy-4-oxoquinolin-1(4H)-yl]benzonitrile (CSD refcode PEBDIL; Hirano et al., 2008 ▸) share with (I) the lack of substituents at C2 and C3 as well as having an aromatic N-substituent, while 1-ethyl-1,4-dihydro-6,7-methylenedioxy-4-oxo-3-quinolinecarboxylic acid (CSD refcode DAHWEO; Cygler & Huber, 1985 ▸) is alone in incorporating C2—H, C3—H, C6—O and C7—O bonds (Fig. 1 ▸ a). Even though (I) is a rather simple covalent structure, it thus represents a rather unique combination of functionalities.
Figure 1.
(a) Schematic drawing of two analogues of (I) in the Cambridge Structural Database (CSD, Version 5.37; Groom et al., 2016 ▸) identified by their six-letter reference codes. (b) Number of entries in the CSD retrieved by using various search fragments. The raw quinolin-4(1H)-one skeleton (with potential substituents on all C and N atoms) yields 759 hits (including a small number of duplicates). Three types of specifications and combinations thereof are then explored: introduction of bonds to O atoms (–OH, alkoxy or phenoxy) from C6 and C7, N1-substitution (blue, subset aromatic ring), and including only acyclic bonds from C2 and C3 atoms (red, X = any atom type, subset H only). Green and violet colours indicate the two molecules in (a). (c) Final CSD search fragment used in the conformational analysis. Dashed bonds have bond type ‘any’, Q is N or C, Z is ‘not hydrogen’, while T3 means the atom has three bonded atoms. The indicated torsion angle runs between the encircled atoms through the two ring centroids.
Structural commentary
The molecular structure of (I) is depicted in Fig. 2 ▸ a, where the short, double-bond nature of the C2=C3 bond [1.342 (2) Å] is clearly visible. While the bicyclic ring systems of DAHWOE and PEBDIL (Fig. 1 ▸ a) are perfectly coplanar with the C6 and C7 substituents as well as the C1′-atom attached to N1, this is not the case for (I); the nitrobenzene ring is inclined to the quinoline ring system by 76.10 (8)°, and the torsion angle defined by atom C9, the two ring centroids and atom C1′ is ca 167.7°; see Fig. 2 ▸ a and 2b. The more extended search fragment in Fig. 1 ▸ c found 157 such torsion angles in 62 CSD entries, and in only nine compounds does this torsion angle deviate by more than ca 13.3° from planarity.
Figure 2.
(a) The molecular structure of (I) with some selected bond lengths (Å; s.u.’s = 0.002 Å) at 295 K. Displacement ellipsoids are shown at the 50% probability level. Pink spheres are the centroids for the two six-membered rings, and the dashed green lines defines the torsion angle discussed in the text. (b) View along the centroid–centroid vector showing the torsion angle from (a) and two neighbouring molecules A and B at (−x + 1, −y + 2, −z + 1) and (x − 1, y, z), respectively. (c) As in (b), but rotated ca 27° around the vertical axis to display two short intermolecular interactions involving the nitrophenyl substituent; H2′⋯O1(−x + 1, −y + 2, −z + 1) is 2.53 Å, while H3′⋯C4A(x − 1, y, z) is 2.72 Å.
Supramolecular features
The reason for the unusual molecular conformation of (I) can be seen in Fig. 2 ▸
b and 2c, where close contacts to two neighbouring molecules are apparent; these force the methoxy group and the nitrophenyl group out of the quinolinone mean plane. In the crystal, molecules are linked by two pairs of C—H⋯O hydrogen bonds, forming tubular-like arrangements propagating along the direction of the diagonals of the ab plane, and enclosing (26) and
(16) ring motifs (Table 1 ▸ and Fig. 3 ▸). Within the tubular-like arrangements, molecules are also linked by offset π–π interactions; the shortest interaction involves inversion-related pyridine rings with an inter-centroid distance Cg1⋯Cg1(−x + 1, −y + 2, −z + 1) = 3.659 (1) Å [Cg1 is the centroid of the N1/C2–C4/C4A/C8A ring; interplanar distance = 3.580 (1) Å, slippage = 0.754 Å]. The crystal density is comparatively high at 1.415 g cm−3, and no voids were calculated by Mercury (Macrae et al., 2008 ▸) using the default settings (probe radius 1.2 Å, grid spacing 0.7 Å).
Table 1. Hydrogen-bond geometry (Å, °).
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
C2′—H2′⋯O1i | 0.93 | 2.53 | 3.320 (2) | 143 |
C10—H103⋯O1′ii | 0.96 | 2.60 | 3.512 (3) | 160 |
Symmetry codes: (i) ; (ii)
.
Figure 3.
A viewed along the normal to (110) of the crystal packing of compound (I). Hydrogen bonds are shown as dashed lines (see Table 1 ▸). For clarity, only H atoms, H2′ and H103, have been included.
Synthesis and crystallization
Cs2CO3 (0.212 g, 0.65 mmol) and 6,7-dimethoxyquinolin-4-ol (67 mg, 0.326 mmol) were weighed out in a round-bottom flask, to which was added 3 ml DMF and 1 ml MeCN. The mixture was then stirred for 15 min. 1-Fluoro-4-nitrobenzene (101 mg, 0.716 mmol) in 2 ml 1:1 DMF:MeCN was then added, and the reaction mixture was stirred for 20 h at 328 K. The crude product was washed with water (4 × 10 ml) and brine (10 ml), and then purified by column chromatography [Hep:EtOAc (4:1) → Hep:EtOAc:MeOH (10:10:1)]. The title compound (I) was obtained as a yellow solid (40 mg, 38%). 1H NMR (CDCl3, 400 MHz): δ 8.48 (d, 2H, J = 8.8 Hz), 7.79 (s, 1H), 7.67 (d, 2H, J = 8.8 Hz), 7.48 (d, 1H, J = 7.8 Hz), 6.35 (d, 1H, J = 7.7 Hz), 6.32 (s, 1H), 3.98 (s, 3H), 3.72 (s, 3H). 13C NMR (CDCl3, 101 MHz): δ 176.98, 153.56, 147.96, 147.71, 146.91, 140.54, 136.08, 128.64, 125.92, 120.99, 110.68, 106.17, 98.10, 56.46, 56.21. HRMS (ESI+) m/z calculated for C17H15N2O5 [M+H]+: 327.0975, found 327.0976. Yellow crystals of compound (I) were grown from a heptane:EtOAc:MeOH (10:10:1) solution by slow evaporation of the solvent.
1 Refinement
Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. The H atoms were included in calculated positions and treated as riding: C—H = 0.93–0.96 Å with U iso(H) = 1.5U eq(C-methyl) and 1.2U eq(C) for other H atoms.
Table 2. Experimental details.
Crystal data | |
Chemical formula | C17H14N2O5 |
M r | 326.30 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 295 |
a, b, c (Å) | 8.3736 (4), 11.7694 (5), 15.5623 (8) |
β (°) | 93.251 (1) |
V (Å3) | 1531.23 (13) |
Z | 4 |
Radiation type | Mo Kα |
μ (mm−1) | 0.11 |
Crystal size (mm) | 0.66 × 0.27 × 0.08 |
Data collection | |
Diffractometer | Bruker D8 Venture diffractometer with a Photon 100 CMOS detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2016 ▸) |
T min, T max | 0.930, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 20516, 3142, 2298 |
R int | 0.032 |
(sin θ/λ)max (Å−1) | 0.626 |
Refinement | |
R[F 2 > 2σ(F 2)], wR(F 2), S | 0.047, 0.127, 1.03 |
No. of reflections | 3142 |
No. of parameters | 219 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.20, −0.21 |
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989017002948/su5354sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989017002948/su5354Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989017002948/su5354Isup3.cml
CCDC reference: 1533984
Additional supporting information: crystallographic information; 3D view; checkCIF report
supplementary crystallographic information
Crystal data
C17H14N2O5 | F(000) = 680 |
Mr = 326.30 | Dx = 1.415 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 8.3736 (4) Å | Cell parameters from 8925 reflections |
b = 11.7694 (5) Å | θ = 2.6–26.4° |
c = 15.5623 (8) Å | µ = 0.11 mm−1 |
β = 93.251 (1)° | T = 295 K |
V = 1531.23 (13) Å3 | Flat lens, yellow |
Z = 4 | 0.66 × 0.27 × 0.08 mm |
Data collection
Bruker D8 Venture diffractometer with a Photon 100 CMOS detector | 3142 independent reflections |
Radiation source: fine-focus sealed tube | 2298 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.032 |
Detector resolution: 8.3 pixels mm-1 | θmax = 26.4°, θmin = 2.2° |
Sets of exposures each taken over 0.5° ω rotation scans | h = −10→10 |
Absorption correction: multi-scan (SADABS; Bruker, 2016) | k = −14→14 |
Tmin = 0.930, Tmax = 1.000 | l = −19→19 |
20516 measured reflections |
Refinement
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.047 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.127 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0557P)2 + 0.4805P] where P = (Fo2 + 2Fc2)/3 |
3142 reflections | (Δ/σ)max < 0.001 |
219 parameters | Δρmax = 0.20 e Å−3 |
0 restraints | Δρmin = −0.21 e Å−3 |
Special details
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
O1 | 0.82921 (15) | 0.99910 (12) | 0.42505 (8) | 0.0623 (4) | |
O2 | 0.86545 (15) | 0.77881 (14) | 0.70970 (8) | 0.0684 (4) | |
O3 | 0.59678 (16) | 0.67943 (13) | 0.71853 (8) | 0.0679 (4) | |
N1 | 0.41894 (16) | 0.81504 (12) | 0.43553 (9) | 0.0477 (4) | |
C2 | 0.4438 (2) | 0.88507 (16) | 0.36804 (11) | 0.0528 (4) | |
H2 | 0.3660 | 0.8887 | 0.3230 | 0.063* | |
C3 | 0.5757 (2) | 0.94908 (16) | 0.36357 (12) | 0.0538 (5) | |
H3 | 0.5850 | 0.9969 | 0.3165 | 0.065* | |
C4 | 0.7020 (2) | 0.94582 (15) | 0.42906 (11) | 0.0466 (4) | |
C5 | 0.7864 (2) | 0.86419 (15) | 0.57179 (11) | 0.0461 (4) | |
H5 | 0.8813 | 0.9051 | 0.5704 | 0.055* | |
C6 | 0.7612 (2) | 0.79688 (16) | 0.64091 (11) | 0.0501 (4) | |
C7 | 0.6135 (2) | 0.73853 (16) | 0.64500 (11) | 0.0508 (4) | |
C8 | 0.5013 (2) | 0.74416 (16) | 0.57787 (11) | 0.0491 (4) | |
H8 | 0.4056 | 0.7045 | 0.5803 | 0.059* | |
C9 | 1.0221 (2) | 0.8218 (2) | 0.70451 (15) | 0.0789 (7) | |
H91 | 1.0657 | 0.7957 | 0.6523 | 0.118* | |
H92 | 1.0879 | 0.7955 | 0.7530 | 0.118* | |
H93 | 1.0191 | 0.9033 | 0.7047 | 0.118* | |
C10 | 0.4431 (3) | 0.6342 (2) | 0.73209 (14) | 0.0791 (7) | |
H101 | 0.3652 | 0.6941 | 0.7281 | 0.119* | |
H102 | 0.4437 | 0.6002 | 0.7882 | 0.119* | |
H103 | 0.4164 | 0.5777 | 0.6892 | 0.119* | |
C4A | 0.67157 (18) | 0.87302 (14) | 0.50243 (10) | 0.0422 (4) | |
C8A | 0.53089 (18) | 0.81007 (14) | 0.50514 (10) | 0.0430 (4) | |
O1' | −0.2498 (2) | 0.57251 (18) | 0.39917 (15) | 0.1105 (7) | |
O2' | −0.0978 (2) | 0.42948 (16) | 0.37958 (14) | 0.1038 (6) | |
N1' | −0.1179 (2) | 0.52979 (17) | 0.39326 (12) | 0.0718 (5) | |
C1' | 0.2824 (2) | 0.74056 (15) | 0.42899 (11) | 0.0460 (4) | |
C2' | 0.1327 (2) | 0.78390 (16) | 0.43907 (12) | 0.0547 (5) | |
H2' | 0.1198 | 0.8597 | 0.4540 | 0.066* | |
C3' | 0.0017 (2) | 0.71397 (17) | 0.42679 (13) | 0.0588 (5) | |
H3' | −0.1009 | 0.7421 | 0.4327 | 0.071* | |
C4' | 0.0242 (2) | 0.60273 (16) | 0.40578 (12) | 0.0532 (5) | |
C5' | 0.1729 (2) | 0.55765 (18) | 0.39643 (14) | 0.0663 (6) | |
H5' | 0.1852 | 0.4815 | 0.3823 | 0.080* | |
C6' | 0.3036 (2) | 0.62773 (17) | 0.40849 (14) | 0.0635 (5) | |
H6' | 0.4060 | 0.5992 | 0.4028 | 0.076* |
Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0581 (8) | 0.0703 (9) | 0.0589 (8) | −0.0198 (7) | 0.0065 (6) | 0.0060 (7) |
O2 | 0.0502 (7) | 0.0978 (11) | 0.0556 (8) | −0.0166 (7) | −0.0109 (6) | 0.0185 (7) |
O3 | 0.0605 (8) | 0.0899 (10) | 0.0524 (8) | −0.0207 (7) | −0.0041 (6) | 0.0208 (7) |
N1 | 0.0440 (8) | 0.0555 (9) | 0.0431 (8) | −0.0060 (7) | −0.0013 (6) | −0.0012 (7) |
C2 | 0.0568 (10) | 0.0594 (11) | 0.0413 (10) | −0.0010 (9) | −0.0040 (8) | 0.0006 (9) |
C3 | 0.0608 (11) | 0.0567 (11) | 0.0439 (10) | −0.0062 (9) | 0.0039 (8) | 0.0050 (8) |
C4 | 0.0493 (10) | 0.0459 (9) | 0.0452 (10) | −0.0034 (8) | 0.0088 (7) | −0.0055 (8) |
C5 | 0.0388 (8) | 0.0533 (10) | 0.0463 (10) | −0.0070 (7) | 0.0041 (7) | −0.0036 (8) |
C6 | 0.0437 (9) | 0.0621 (11) | 0.0438 (10) | −0.0031 (8) | −0.0022 (7) | 0.0008 (8) |
C7 | 0.0498 (10) | 0.0593 (11) | 0.0433 (10) | −0.0067 (8) | 0.0043 (8) | 0.0055 (8) |
C8 | 0.0418 (9) | 0.0583 (10) | 0.0470 (10) | −0.0109 (8) | 0.0023 (7) | 0.0011 (8) |
C9 | 0.0613 (13) | 0.0953 (17) | 0.0772 (15) | −0.0268 (12) | −0.0206 (11) | 0.0183 (13) |
C10 | 0.0775 (14) | 0.1009 (18) | 0.0584 (13) | −0.0415 (13) | 0.0006 (10) | 0.0181 (12) |
C4A | 0.0407 (8) | 0.0448 (9) | 0.0414 (9) | −0.0013 (7) | 0.0061 (7) | −0.0053 (7) |
C8A | 0.0403 (9) | 0.0494 (10) | 0.0391 (9) | 0.0002 (7) | 0.0021 (7) | −0.0051 (7) |
O1' | 0.0539 (10) | 0.1104 (14) | 0.165 (2) | −0.0167 (10) | −0.0103 (10) | −0.0218 (13) |
O2' | 0.0966 (13) | 0.0717 (12) | 0.1419 (18) | −0.0284 (10) | −0.0051 (11) | −0.0223 (11) |
N1' | 0.0650 (12) | 0.0740 (13) | 0.0750 (12) | −0.0178 (10) | −0.0073 (9) | −0.0091 (10) |
C1' | 0.0446 (9) | 0.0528 (10) | 0.0402 (9) | −0.0043 (8) | −0.0018 (7) | −0.0047 (8) |
C2' | 0.0497 (10) | 0.0523 (10) | 0.0616 (12) | 0.0017 (8) | −0.0004 (8) | −0.0110 (9) |
C3' | 0.0430 (10) | 0.0652 (12) | 0.0681 (13) | 0.0017 (9) | 0.0013 (9) | −0.0098 (10) |
C4' | 0.0504 (10) | 0.0596 (11) | 0.0489 (10) | −0.0094 (9) | −0.0037 (8) | −0.0077 (9) |
C5' | 0.0638 (12) | 0.0512 (11) | 0.0842 (15) | −0.0031 (10) | 0.0050 (10) | −0.0163 (10) |
C6' | 0.0481 (10) | 0.0614 (12) | 0.0813 (14) | 0.0039 (9) | 0.0061 (9) | −0.0145 (11) |
Geometric parameters (Å, º)
O1—C4 | 1.241 (2) | C9—H91 | 0.9600 |
O2—C6 | 1.359 (2) | C9—H92 | 0.9600 |
O2—C9 | 1.412 (2) | C9—H93 | 0.9600 |
O3—C7 | 1.353 (2) | C10—H101 | 0.9600 |
O3—C10 | 1.419 (2) | C10—H102 | 0.9600 |
N1—C2 | 1.360 (2) | C10—H103 | 0.9600 |
N1—C8A | 1.393 (2) | C4A—C8A | 1.394 (2) |
N1—C1' | 1.440 (2) | O1'—N1' | 1.222 (2) |
C2—C3 | 1.342 (2) | O2'—N1' | 1.213 (2) |
C2—H2 | 0.9300 | N1'—C4' | 1.471 (2) |
C3—C4 | 1.427 (3) | C1'—C2' | 1.370 (2) |
C3—H3 | 0.9300 | C1'—C6' | 1.380 (3) |
C4—C4A | 1.461 (2) | C2'—C3' | 1.376 (3) |
C5—C6 | 1.362 (2) | C2'—H2' | 0.9300 |
C5—C4A | 1.408 (2) | C3'—C4' | 1.365 (3) |
C5—H5 | 0.9300 | C3'—H3' | 0.9300 |
C6—C7 | 1.419 (2) | C4'—C5' | 1.369 (3) |
C7—C8 | 1.366 (2) | C5'—C6' | 1.375 (3) |
C8—C8A | 1.406 (2) | C5'—H5' | 0.9300 |
C8—H8 | 0.9300 | C6'—H6' | 0.9300 |
C6—O2—C9 | 117.12 (15) | O3—C10—H102 | 109.5 |
C7—O3—C10 | 117.17 (15) | H101—C10—H102 | 109.5 |
C2—N1—C8A | 120.01 (14) | O3—C10—H103 | 109.5 |
C2—N1—C1' | 118.03 (14) | H101—C10—H103 | 109.5 |
C8A—N1—C1' | 121.74 (14) | H102—C10—H103 | 109.5 |
C3—C2—N1 | 122.86 (16) | C8A—C4A—C5 | 118.63 (15) |
C3—C2—H2 | 118.6 | C8A—C4A—C4 | 121.33 (15) |
N1—C2—H2 | 118.6 | C5—C4A—C4 | 120.03 (15) |
C2—C3—C4 | 121.77 (17) | N1—C8A—C4A | 119.12 (15) |
C2—C3—H3 | 119.1 | N1—C8A—C8 | 120.52 (15) |
C4—C3—H3 | 119.1 | C4A—C8A—C8 | 120.35 (15) |
O1—C4—C3 | 123.65 (16) | O2'—N1'—O1' | 123.3 (2) |
O1—C4—C4A | 121.58 (16) | O2'—N1'—C4' | 118.15 (19) |
C3—C4—C4A | 114.77 (15) | O1'—N1'—C4' | 118.53 (19) |
C6—C5—C4A | 121.24 (15) | C2'—C1'—C6' | 121.02 (17) |
C6—C5—H5 | 119.4 | C2'—C1'—N1 | 119.55 (16) |
C4A—C5—H5 | 119.4 | C6'—C1'—N1 | 119.35 (16) |
O2—C6—C5 | 126.29 (16) | C1'—C2'—C3' | 119.25 (17) |
O2—C6—C7 | 114.29 (15) | C1'—C2'—H2' | 120.4 |
C5—C6—C7 | 119.43 (16) | C3'—C2'—H2' | 120.4 |
O3—C7—C8 | 124.88 (16) | C4'—C3'—C2' | 119.14 (17) |
O3—C7—C6 | 114.76 (15) | C4'—C3'—H3' | 120.4 |
C8—C7—C6 | 120.36 (16) | C2'—C3'—H3' | 120.4 |
C7—C8—C8A | 119.83 (16) | C3'—C4'—C5' | 122.41 (17) |
C7—C8—H8 | 120.1 | C3'—C4'—N1' | 118.02 (17) |
C8A—C8—H8 | 120.1 | C5'—C4'—N1' | 119.57 (18) |
O2—C9—H91 | 109.5 | C4'—C5'—C6' | 118.35 (18) |
O2—C9—H92 | 109.5 | C4'—C5'—H5' | 120.8 |
H91—C9—H92 | 109.5 | C6'—C5'—H5' | 120.8 |
O2—C9—H93 | 109.5 | C5'—C6'—C1' | 119.82 (18) |
H91—C9—H93 | 109.5 | C5'—C6'—H6' | 120.1 |
H92—C9—H93 | 109.5 | C1'—C6'—H6' | 120.1 |
O3—C10—H101 | 109.5 | ||
C8A—N1—C2—C3 | 1.9 (3) | C1'—N1—C8A—C8 | −9.9 (2) |
C1'—N1—C2—C3 | −172.90 (17) | C5—C4A—C8A—N1 | −177.76 (15) |
N1—C2—C3—C4 | 1.6 (3) | C4—C4A—C8A—N1 | 1.4 (2) |
C2—C3—C4—O1 | 176.06 (18) | C5—C4A—C8A—C8 | 3.4 (2) |
C2—C3—C4—C4A | −3.3 (3) | C4—C4A—C8A—C8 | −177.44 (15) |
C9—O2—C6—C5 | −8.6 (3) | C7—C8—C8A—N1 | 178.84 (16) |
C9—O2—C6—C7 | 171.73 (18) | C7—C8—C8A—C4A | −2.3 (3) |
C4A—C5—C6—O2 | 177.51 (17) | C2—N1—C1'—C2' | −75.8 (2) |
C4A—C5—C6—C7 | −2.9 (3) | C8A—N1—C1'—C2' | 109.47 (19) |
C10—O3—C7—C8 | −9.8 (3) | C2—N1—C1'—C6' | 101.0 (2) |
C10—O3—C7—C6 | 170.42 (18) | C8A—N1—C1'—C6' | −73.7 (2) |
O2—C6—C7—O3 | 3.4 (2) | C6'—C1'—C2'—C3' | −1.3 (3) |
C5—C6—C7—O3 | −176.25 (17) | N1—C1'—C2'—C3' | 175.48 (17) |
O2—C6—C7—C8 | −176.36 (18) | C1'—C2'—C3'—C4' | 0.7 (3) |
C5—C6—C7—C8 | 4.0 (3) | C2'—C3'—C4'—C5' | 0.1 (3) |
O3—C7—C8—C8A | 178.89 (17) | C2'—C3'—C4'—N1' | 179.83 (18) |
C6—C7—C8—C8A | −1.4 (3) | O2'—N1'—C4'—C3' | −175.7 (2) |
C6—C5—C4A—C8A | −0.8 (2) | O1'—N1'—C4'—C3' | 2.5 (3) |
C6—C5—C4A—C4 | −179.93 (16) | O2'—N1'—C4'—C5' | 4.1 (3) |
O1—C4—C4A—C8A | −177.59 (16) | O1'—N1'—C4'—C5' | −177.7 (2) |
C3—C4—C4A—C8A | 1.8 (2) | C3'—C4'—C5'—C6' | −0.2 (3) |
O1—C4—C4A—C5 | 1.6 (2) | N1'—C4'—C5'—C6' | 179.99 (19) |
C3—C4—C4A—C5 | −179.05 (16) | C4'—C5'—C6'—C1' | −0.4 (3) |
C2—N1—C8A—C4A | −3.3 (2) | C2'—C1'—C6'—C5' | 1.1 (3) |
C1'—N1—C8A—C4A | 171.27 (15) | N1—C1'—C6'—C5' | −175.66 (18) |
C2—N1—C8A—C8 | 175.52 (16) |
Hydrogen-bond geometry (Å, º)
D—H···A | D—H | H···A | D···A | D—H···A |
C2′—H2′···O1i | 0.93 | 2.53 | 3.320 (2) | 143 |
C10—H103···O1′ii | 0.96 | 2.60 | 3.512 (3) | 160 |
Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x, −y+1, −z+1.
References
- Bruker (2016). APEX3, SAINT-Plus and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.
- Cygler, M. & Huber, C. P. (1985). Acta Cryst. C41, 1052–1055.
- Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179. [DOI] [PMC free article] [PubMed]
- Hanahan, D. & Weinberg, R. A. (2011). Cell, 144, 646–674. [DOI] [PubMed]
- Hirano, J., Hamase, K., Akita, T. & Zaitsu, K. (2008). Luminescence, 23, 350–355. [DOI] [PubMed]
- Lai, M.-J., Chang, J.-Y., Lee, H.-Y., Kuo, C.-C., Lin, M.-H., Hsieh, H.-P., Chang, C.-Y., Wu, J.-S., Wu, S.-Y., Shey, K.-S. & Liou, J.-P. (2011). Eur. J. Med. Chem. 46, 3623–3629. [DOI] [PubMed]
- Lu, Y., Chen, J., Xiao, M., Li, W. & Miller, D. D. (2012). Pharm. Res. 29, 2943–2971. [DOI] [PMC free article] [PubMed]
- Macrae, C. F., Bruno, I. J., Chisholm, J. A., Edgington, P. R., McCabe, P., Pidcock, E., Rodriguez-Monge, L., Taylor, R., van de Streek, J. & Wood, P. A. (2008). J. Appl. Cryst. 41, 466–470.
- Nguyen, T. L., McGrath, C., Hermone, A. R., Burnett, J. C., Zaharevitz, D. W., Day, B. W., Wipf, P., Hamel, E. & Gussio, R. (2005). J. Med. Chem. 48, 6107–6116. [DOI] [PubMed]
- Parker, A. L., Kavallaris, M. & McCarroll, J. A. (2014). Front. Oncol. 4, 1–19. [DOI] [PMC free article] [PubMed]
- Patil, S. A., Patil, R. & Miller, D. D. (2012). Future Med. Chem. 4, 2085–2115. [DOI] [PubMed]
- Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8.
- Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8.
- Wang, X.-F., Wang, S.-B., Ohkoshi, E., Wang, L.-T., Hamel, E., Qian, K., Morris-Natschke, S. L., Lee, K.-H. & Xie, L. (2013). Eur. J. Med. Chem. 67, 196–207. [DOI] [PMC free article] [PubMed]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989017002948/su5354sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989017002948/su5354Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989017002948/su5354Isup3.cml
CCDC reference: 1533984
Additional supporting information: crystallographic information; 3D view; checkCIF report