Skip to main content
Acta Crystallographica Section E: Crystallographic Communications logoLink to Acta Crystallographica Section E: Crystallographic Communications
. 2017 Feb 24;73(Pt 3):441–444. doi: 10.1107/S2056989017002948

Crystal structure of 6,7-dimeth­oxy-1-(4-nitro­phen­yl)quinolin-4(1H)-one: a mol­ecular scaffold for potential tubulin polymerization inhibitors

Vegard Torp Lien a, Dag Erlend Olberg a, Jo Klaveness a, Carl Henrik Görbitz b,*
PMCID: PMC5347072  PMID: 28316827

The single-crystal X-ray diffraction investigation of a substituted quinoline derivative, which may serve as a basis for the development of a family of cytotoxic agents, confirms the anti­cipated covalent structure with an unusual twisted conformation and reveals a densely packed mol­ecular lattice.

Keywords: crystal structure, cytotoxic agents, N-substituted quinolone, tubulin polymerization, hydrogen bonding

Abstract

The protein tubulin is central for maintaining normal cellular processes, and mol­ecules inter­fering with the tubulin dynamics have potential in the treatment of cancerous diseases. The title compound, C17H14N2O5, was prepared as a lead compound in a project dedicated to the development of therapeutic agents binding to the colchicine binding site on tubulin, thereby inter­fering with the cell division in cancer cells. It holds many of the main structural characteristics for colchicine binding and has the potential for further modification and functionalization. In the title mol­ecule, the benzene ring is inclined to the quinoline ring by 76.10 (8)°. In the crystal, mol­ecules are linked by two pairs of C—H⋯O hydrogen bonds, forming tubular-like arrangements, propagating along the direction of the diagonals of the ab plane, and enclosing R 2 2(26) and R 2 2(16) ring motifs.

Chemical context  

Due to the elevated rate of cell division in cancer cells, agents targeting proteins central to the mitotic process are attractive for cancer treatment (Hanahan & Weinberg, 2011). The protein tubulin polymerizes during the mitotic phase into microtubules, and this process is vital for the correct cell division (Parker et al., 2014). Based on the structures of the natural products colchicine and comberastatin A-4, a great amount of research on the synthesis and biological evaluation has been carried out (Lu et al., 2012). All these analogs bind to the colchicine binding site, and the pharmacophore and binding site is well known (Nguyen et al., 2005).graphic file with name e-73-00441-scheme1.jpg

Despite large research efforts, many colchicine-binding drug candidates suffer from resistance and toxicity problems (Lu et al., 2012). Therefore, further exploration and biological evaluation of possible structures is needed. From another medicinal chemistry project in our group, the title compound, (I), appeared as a side product in significant amounts. The structure was rationalized from NMR studies and confirmed by X-ray crystallography. Based on the literature and knowledge of the characteristics of mol­ecules binding to the colchicine binding site on tubulin, it is reasonable that analogs of this structure might be potent cytotoxic agents. The reported structure can easily be further modified to improve binding affinities in correspondence with reported structure–activity studies (Lai et al., 2011; Wang et al., 2013; Patil et al., 2012). Herein, we present the synthesis and the crystal structure of the title compound, 6,7-dimeth­oxy-1-(4-nitro­phen­yl)quinolin-4(1H)-one (I).

Database survey  

The frequencies of mol­ecules in the Cambridge Structural Database (CSD, version 5.37; Groom et al., 2016) incorporating various modifications of the quinolin-4(1H)-one fragment are shown in Fig. 1 b. It can be seen that only one previous compound, 4-[6-meth­oxy-4-oxoquinolin-1(4H)-yl]benzo­nitrile (CSD refcode PEBDIL; Hirano et al., 2008) share with (I) the lack of substituents at C2 and C3 as well as having an aromatic N-substituent, while 1-ethyl-1,4-di­hydro-6,7-methyl­enedi­oxy-4-oxo-3-quinoline­carb­oxy­lic acid (CSD refcode DAHWEO; Cygler & Huber, 1985) is alone in incorporating C2—H, C3—H, C6—O and C7—O bonds (Fig. 1 a). Even though (I) is a rather simple covalent structure, it thus represents a rather unique combination of functionalities.

Figure 1.

Figure 1

(a) Schematic drawing of two analogues of (I) in the Cambridge Structural Database (CSD, Version 5.37; Groom et al., 2016) identified by their six-letter reference codes. (b) Number of entries in the CSD retrieved by using various search fragments. The raw quinolin-4(1H)-one skeleton (with potential substituents on all C and N atoms) yields 759 hits (including a small number of duplicates). Three types of specifications and combinations thereof are then explored: introduction of bonds to O atoms (–OH, alk­oxy or phen­oxy) from C6 and C7, N1-substitution (blue, subset aromatic ring), and including only acyclic bonds from C2 and C3 atoms (red, X = any atom type, subset H only). Green and violet colours indicate the two mol­ecules in (a). (c) Final CSD search fragment used in the conformational analysis. Dashed bonds have bond type ‘any’, Q is N or C, Z is ‘not hydrogen’, while T3 means the atom has three bonded atoms. The indicated torsion angle runs between the encircled atoms through the two ring centroids.

Structural commentary  

The mol­ecular structure of (I) is depicted in Fig. 2 a, where the short, double-bond nature of the C2=C3 bond [1.342 (2) Å] is clearly visible. While the bicyclic ring systems of DAHWOE and PEBDIL (Fig. 1 a) are perfectly coplanar with the C6 and C7 substituents as well as the C1′-atom attached to N1, this is not the case for (I); the nitro­benzene ring is inclined to the quinoline ring system by 76.10 (8)°, and the torsion angle defined by atom C9, the two ring centroids and atom C1′ is ca 167.7°; see Fig. 2 a and 2b. The more extended search fragment in Fig. 1 c found 157 such torsion angles in 62 CSD entries, and in only nine compounds does this torsion angle deviate by more than ca 13.3° from planarity.

Figure 2.

Figure 2

(a) The mol­ecular structure of (I) with some selected bond lengths (Å; s.u.’s = 0.002 Å) at 295 K. Displacement ellipsoids are shown at the 50% probability level. Pink spheres are the centroids for the two six-membered rings, and the dashed green lines defines the torsion angle discussed in the text. (b) View along the centroid–centroid vector showing the torsion angle from (a) and two neighbouring mol­ecules A and B at (−x + 1, −y + 2, −z + 1) and (x − 1, y, z), respectively. (c) As in (b), but rotated ca 27° around the vertical axis to display two short inter­molecular inter­actions involving the nitro­phenyl substituent; H2′⋯O1(−x + 1, −y + 2, −z + 1) is 2.53 Å, while H3′⋯C4A(x − 1, y, z) is 2.72 Å.

Supra­molecular features  

The reason for the unusual mol­ecular conformation of (I) can be seen in Fig. 2 b and 2c, where close contacts to two neighbouring mol­ecules are apparent; these force the meth­oxy group and the nitro­phenyl group out of the quinolinone mean plane. In the crystal, mol­ecules are linked by two pairs of C—H⋯O hydrogen bonds, forming tubular-like arrangements propagating along the direction of the diagonals of the ab plane, and enclosing Inline graphic(26) and Inline graphic(16) ring motifs (Table 1 and Fig. 3). Within the tubular-like arrangements, mol­ecules are also linked by offset π–π inter­actions; the shortest inter­action involves inversion-related pyridine rings with an inter-centroid distance Cg1⋯Cg1(−x + 1, −y + 2, −z + 1) = 3.659 (1) Å [Cg1 is the centroid of the N1/C2–C4/C4A/C8A ring; inter­planar distance = 3.580 (1) Å, slippage = 0.754 Å]. The crystal density is comparatively high at 1.415 g cm−3, and no voids were calculated by Mercury (Macrae et al., 2008) using the default settings (probe radius 1.2 Å, grid spacing 0.7 Å).

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
C2′—H2′⋯O1i 0.93 2.53 3.320 (2) 143
C10—H103⋯O1′ii 0.96 2.60 3.512 (3) 160

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Figure 3.

Figure 3

A viewed along the normal to (110) of the crystal packing of compound (I). Hydrogen bonds are shown as dashed lines (see Table 1). For clarity, only H atoms, H2′ and H103, have been included.

Synthesis and crystallization  

Cs2CO3 (0.212 g, 0.65 mmol) and 6,7-di­meth­oxy­quinolin-4-ol (67 mg, 0.326 mmol) were weighed out in a round-bottom flask, to which was added 3 ml DMF and 1 ml MeCN. The mixture was then stirred for 15 min. 1-Fluoro-4-nitro­benzene (101 mg, 0.716 mmol) in 2 ml 1:1 DMF:MeCN was then added, and the reaction mixture was stirred for 20 h at 328 K. The crude product was washed with water (4 × 10 ml) and brine (10 ml), and then purified by column chromatography [Hep:EtOAc (4:1) → Hep:EtOAc:MeOH (10:10:1)]. The title compound (I) was obtained as a yellow solid (40 mg, 38%). 1H NMR (CDCl3, 400 MHz): δ 8.48 (d, 2H, J = 8.8 Hz), 7.79 (s, 1H), 7.67 (d, 2H, J = 8.8 Hz), 7.48 (d, 1H, J = 7.8 Hz), 6.35 (d, 1H, J = 7.7 Hz), 6.32 (s, 1H), 3.98 (s, 3H), 3.72 (s, 3H). 13C NMR (CDCl3, 101 MHz): δ 176.98, 153.56, 147.96, 147.71, 146.91, 140.54, 136.08, 128.64, 125.92, 120.99, 110.68, 106.17, 98.10, 56.46, 56.21. HRMS (ESI+) m/z calculated for C17H15N2O5 [M+H]+: 327.0975, found 327.0976. Yellow crystals of compound (I) were grown from a hepta­ne:EtOAc:MeOH (10:10:1) solution by slow evaporation of the solvent.

1 Refinement  

Crystal data, data collection and structure refinement details are summarized in Table 2. The H atoms were included in calculated positions and treated as riding: C—H = 0.93–0.96 Å with U iso(H) = 1.5U eq(C-meth­yl) and 1.2U eq(C) for other H atoms.

Table 2. Experimental details.

Crystal data
Chemical formula C17H14N2O5
M r 326.30
Crystal system, space group Monoclinic, P21/n
Temperature (K) 295
a, b, c (Å) 8.3736 (4), 11.7694 (5), 15.5623 (8)
β (°) 93.251 (1)
V3) 1531.23 (13)
Z 4
Radiation type Mo Kα
μ (mm−1) 0.11
Crystal size (mm) 0.66 × 0.27 × 0.08
 
Data collection
Diffractometer Bruker D8 Venture diffractometer with a Photon 100 CMOS detector
Absorption correction Multi-scan (SADABS; Bruker, 2016)
T min, T max 0.930, 1.000
No. of measured, independent and observed [I > 2σ(I)] reflections 20516, 3142, 2298
R int 0.032
(sin θ/λ)max−1) 0.626
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.047, 0.127, 1.03
No. of reflections 3142
No. of parameters 219
H-atom treatment H-atom parameters constrained
Δρmax, Δρmin (e Å−3) 0.20, −0.21

Computer programs: APEX3 and SAINT-Plus (Bruker, 2016), SHELXT2014 (Sheldrick, 2015a ), SHELXL2014 (Sheldrick, 2015b ) and Mercury (Macrae et al., 2008).

Supplementary Material

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989017002948/su5354sup1.cif

e-73-00441-sup1.cif (623.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989017002948/su5354Isup2.hkl

e-73-00441-Isup2.hkl (251.1KB, hkl)

Supporting information file. DOI: 10.1107/S2056989017002948/su5354Isup3.cml

CCDC reference: 1533984

Additional supporting information: crystallographic information; 3D view; checkCIF report

supplementary crystallographic information

Crystal data

C17H14N2O5 F(000) = 680
Mr = 326.30 Dx = 1.415 Mg m3
Monoclinic, P21/n Mo Kα radiation, λ = 0.71073 Å
a = 8.3736 (4) Å Cell parameters from 8925 reflections
b = 11.7694 (5) Å θ = 2.6–26.4°
c = 15.5623 (8) Å µ = 0.11 mm1
β = 93.251 (1)° T = 295 K
V = 1531.23 (13) Å3 Flat lens, yellow
Z = 4 0.66 × 0.27 × 0.08 mm

Data collection

Bruker D8 Venture diffractometer with a Photon 100 CMOS detector 3142 independent reflections
Radiation source: fine-focus sealed tube 2298 reflections with I > 2σ(I)
Graphite monochromator Rint = 0.032
Detector resolution: 8.3 pixels mm-1 θmax = 26.4°, θmin = 2.2°
Sets of exposures each taken over 0.5° ω rotation scans h = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2016) k = −14→14
Tmin = 0.930, Tmax = 1.000 l = −19→19
20516 measured reflections

Refinement

Refinement on F2 Primary atom site location: structure-invariant direct methods
Least-squares matrix: full Secondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047 Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127 H-atom parameters constrained
S = 1.03 w = 1/[σ2(Fo2) + (0.0557P)2 + 0.4805P] where P = (Fo2 + 2Fc2)/3
3142 reflections (Δ/σ)max < 0.001
219 parameters Δρmax = 0.20 e Å3
0 restraints Δρmin = −0.21 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.82921 (15) 0.99910 (12) 0.42505 (8) 0.0623 (4)
O2 0.86545 (15) 0.77881 (14) 0.70970 (8) 0.0684 (4)
O3 0.59678 (16) 0.67943 (13) 0.71853 (8) 0.0679 (4)
N1 0.41894 (16) 0.81504 (12) 0.43553 (9) 0.0477 (4)
C2 0.4438 (2) 0.88507 (16) 0.36804 (11) 0.0528 (4)
H2 0.3660 0.8887 0.3230 0.063*
C3 0.5757 (2) 0.94908 (16) 0.36357 (12) 0.0538 (5)
H3 0.5850 0.9969 0.3165 0.065*
C4 0.7020 (2) 0.94582 (15) 0.42906 (11) 0.0466 (4)
C5 0.7864 (2) 0.86419 (15) 0.57179 (11) 0.0461 (4)
H5 0.8813 0.9051 0.5704 0.055*
C6 0.7612 (2) 0.79688 (16) 0.64091 (11) 0.0501 (4)
C7 0.6135 (2) 0.73853 (16) 0.64500 (11) 0.0508 (4)
C8 0.5013 (2) 0.74416 (16) 0.57787 (11) 0.0491 (4)
H8 0.4056 0.7045 0.5803 0.059*
C9 1.0221 (2) 0.8218 (2) 0.70451 (15) 0.0789 (7)
H91 1.0657 0.7957 0.6523 0.118*
H92 1.0879 0.7955 0.7530 0.118*
H93 1.0191 0.9033 0.7047 0.118*
C10 0.4431 (3) 0.6342 (2) 0.73209 (14) 0.0791 (7)
H101 0.3652 0.6941 0.7281 0.119*
H102 0.4437 0.6002 0.7882 0.119*
H103 0.4164 0.5777 0.6892 0.119*
C4A 0.67157 (18) 0.87302 (14) 0.50243 (10) 0.0422 (4)
C8A 0.53089 (18) 0.81007 (14) 0.50514 (10) 0.0430 (4)
O1' −0.2498 (2) 0.57251 (18) 0.39917 (15) 0.1105 (7)
O2' −0.0978 (2) 0.42948 (16) 0.37958 (14) 0.1038 (6)
N1' −0.1179 (2) 0.52979 (17) 0.39326 (12) 0.0718 (5)
C1' 0.2824 (2) 0.74056 (15) 0.42899 (11) 0.0460 (4)
C2' 0.1327 (2) 0.78390 (16) 0.43907 (12) 0.0547 (5)
H2' 0.1198 0.8597 0.4540 0.066*
C3' 0.0017 (2) 0.71397 (17) 0.42679 (13) 0.0588 (5)
H3' −0.1009 0.7421 0.4327 0.071*
C4' 0.0242 (2) 0.60273 (16) 0.40578 (12) 0.0532 (5)
C5' 0.1729 (2) 0.55765 (18) 0.39643 (14) 0.0663 (6)
H5' 0.1852 0.4815 0.3823 0.080*
C6' 0.3036 (2) 0.62773 (17) 0.40849 (14) 0.0635 (5)
H6' 0.4060 0.5992 0.4028 0.076*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0581 (8) 0.0703 (9) 0.0589 (8) −0.0198 (7) 0.0065 (6) 0.0060 (7)
O2 0.0502 (7) 0.0978 (11) 0.0556 (8) −0.0166 (7) −0.0109 (6) 0.0185 (7)
O3 0.0605 (8) 0.0899 (10) 0.0524 (8) −0.0207 (7) −0.0041 (6) 0.0208 (7)
N1 0.0440 (8) 0.0555 (9) 0.0431 (8) −0.0060 (7) −0.0013 (6) −0.0012 (7)
C2 0.0568 (10) 0.0594 (11) 0.0413 (10) −0.0010 (9) −0.0040 (8) 0.0006 (9)
C3 0.0608 (11) 0.0567 (11) 0.0439 (10) −0.0062 (9) 0.0039 (8) 0.0050 (8)
C4 0.0493 (10) 0.0459 (9) 0.0452 (10) −0.0034 (8) 0.0088 (7) −0.0055 (8)
C5 0.0388 (8) 0.0533 (10) 0.0463 (10) −0.0070 (7) 0.0041 (7) −0.0036 (8)
C6 0.0437 (9) 0.0621 (11) 0.0438 (10) −0.0031 (8) −0.0022 (7) 0.0008 (8)
C7 0.0498 (10) 0.0593 (11) 0.0433 (10) −0.0067 (8) 0.0043 (8) 0.0055 (8)
C8 0.0418 (9) 0.0583 (10) 0.0470 (10) −0.0109 (8) 0.0023 (7) 0.0011 (8)
C9 0.0613 (13) 0.0953 (17) 0.0772 (15) −0.0268 (12) −0.0206 (11) 0.0183 (13)
C10 0.0775 (14) 0.1009 (18) 0.0584 (13) −0.0415 (13) 0.0006 (10) 0.0181 (12)
C4A 0.0407 (8) 0.0448 (9) 0.0414 (9) −0.0013 (7) 0.0061 (7) −0.0053 (7)
C8A 0.0403 (9) 0.0494 (10) 0.0391 (9) 0.0002 (7) 0.0021 (7) −0.0051 (7)
O1' 0.0539 (10) 0.1104 (14) 0.165 (2) −0.0167 (10) −0.0103 (10) −0.0218 (13)
O2' 0.0966 (13) 0.0717 (12) 0.1419 (18) −0.0284 (10) −0.0051 (11) −0.0223 (11)
N1' 0.0650 (12) 0.0740 (13) 0.0750 (12) −0.0178 (10) −0.0073 (9) −0.0091 (10)
C1' 0.0446 (9) 0.0528 (10) 0.0402 (9) −0.0043 (8) −0.0018 (7) −0.0047 (8)
C2' 0.0497 (10) 0.0523 (10) 0.0616 (12) 0.0017 (8) −0.0004 (8) −0.0110 (9)
C3' 0.0430 (10) 0.0652 (12) 0.0681 (13) 0.0017 (9) 0.0013 (9) −0.0098 (10)
C4' 0.0504 (10) 0.0596 (11) 0.0489 (10) −0.0094 (9) −0.0037 (8) −0.0077 (9)
C5' 0.0638 (12) 0.0512 (11) 0.0842 (15) −0.0031 (10) 0.0050 (10) −0.0163 (10)
C6' 0.0481 (10) 0.0614 (12) 0.0813 (14) 0.0039 (9) 0.0061 (9) −0.0145 (11)

Geometric parameters (Å, º)

O1—C4 1.241 (2) C9—H91 0.9600
O2—C6 1.359 (2) C9—H92 0.9600
O2—C9 1.412 (2) C9—H93 0.9600
O3—C7 1.353 (2) C10—H101 0.9600
O3—C10 1.419 (2) C10—H102 0.9600
N1—C2 1.360 (2) C10—H103 0.9600
N1—C8A 1.393 (2) C4A—C8A 1.394 (2)
N1—C1' 1.440 (2) O1'—N1' 1.222 (2)
C2—C3 1.342 (2) O2'—N1' 1.213 (2)
C2—H2 0.9300 N1'—C4' 1.471 (2)
C3—C4 1.427 (3) C1'—C2' 1.370 (2)
C3—H3 0.9300 C1'—C6' 1.380 (3)
C4—C4A 1.461 (2) C2'—C3' 1.376 (3)
C5—C6 1.362 (2) C2'—H2' 0.9300
C5—C4A 1.408 (2) C3'—C4' 1.365 (3)
C5—H5 0.9300 C3'—H3' 0.9300
C6—C7 1.419 (2) C4'—C5' 1.369 (3)
C7—C8 1.366 (2) C5'—C6' 1.375 (3)
C8—C8A 1.406 (2) C5'—H5' 0.9300
C8—H8 0.9300 C6'—H6' 0.9300
C6—O2—C9 117.12 (15) O3—C10—H102 109.5
C7—O3—C10 117.17 (15) H101—C10—H102 109.5
C2—N1—C8A 120.01 (14) O3—C10—H103 109.5
C2—N1—C1' 118.03 (14) H101—C10—H103 109.5
C8A—N1—C1' 121.74 (14) H102—C10—H103 109.5
C3—C2—N1 122.86 (16) C8A—C4A—C5 118.63 (15)
C3—C2—H2 118.6 C8A—C4A—C4 121.33 (15)
N1—C2—H2 118.6 C5—C4A—C4 120.03 (15)
C2—C3—C4 121.77 (17) N1—C8A—C4A 119.12 (15)
C2—C3—H3 119.1 N1—C8A—C8 120.52 (15)
C4—C3—H3 119.1 C4A—C8A—C8 120.35 (15)
O1—C4—C3 123.65 (16) O2'—N1'—O1' 123.3 (2)
O1—C4—C4A 121.58 (16) O2'—N1'—C4' 118.15 (19)
C3—C4—C4A 114.77 (15) O1'—N1'—C4' 118.53 (19)
C6—C5—C4A 121.24 (15) C2'—C1'—C6' 121.02 (17)
C6—C5—H5 119.4 C2'—C1'—N1 119.55 (16)
C4A—C5—H5 119.4 C6'—C1'—N1 119.35 (16)
O2—C6—C5 126.29 (16) C1'—C2'—C3' 119.25 (17)
O2—C6—C7 114.29 (15) C1'—C2'—H2' 120.4
C5—C6—C7 119.43 (16) C3'—C2'—H2' 120.4
O3—C7—C8 124.88 (16) C4'—C3'—C2' 119.14 (17)
O3—C7—C6 114.76 (15) C4'—C3'—H3' 120.4
C8—C7—C6 120.36 (16) C2'—C3'—H3' 120.4
C7—C8—C8A 119.83 (16) C3'—C4'—C5' 122.41 (17)
C7—C8—H8 120.1 C3'—C4'—N1' 118.02 (17)
C8A—C8—H8 120.1 C5'—C4'—N1' 119.57 (18)
O2—C9—H91 109.5 C4'—C5'—C6' 118.35 (18)
O2—C9—H92 109.5 C4'—C5'—H5' 120.8
H91—C9—H92 109.5 C6'—C5'—H5' 120.8
O2—C9—H93 109.5 C5'—C6'—C1' 119.82 (18)
H91—C9—H93 109.5 C5'—C6'—H6' 120.1
H92—C9—H93 109.5 C1'—C6'—H6' 120.1
O3—C10—H101 109.5
C8A—N1—C2—C3 1.9 (3) C1'—N1—C8A—C8 −9.9 (2)
C1'—N1—C2—C3 −172.90 (17) C5—C4A—C8A—N1 −177.76 (15)
N1—C2—C3—C4 1.6 (3) C4—C4A—C8A—N1 1.4 (2)
C2—C3—C4—O1 176.06 (18) C5—C4A—C8A—C8 3.4 (2)
C2—C3—C4—C4A −3.3 (3) C4—C4A—C8A—C8 −177.44 (15)
C9—O2—C6—C5 −8.6 (3) C7—C8—C8A—N1 178.84 (16)
C9—O2—C6—C7 171.73 (18) C7—C8—C8A—C4A −2.3 (3)
C4A—C5—C6—O2 177.51 (17) C2—N1—C1'—C2' −75.8 (2)
C4A—C5—C6—C7 −2.9 (3) C8A—N1—C1'—C2' 109.47 (19)
C10—O3—C7—C8 −9.8 (3) C2—N1—C1'—C6' 101.0 (2)
C10—O3—C7—C6 170.42 (18) C8A—N1—C1'—C6' −73.7 (2)
O2—C6—C7—O3 3.4 (2) C6'—C1'—C2'—C3' −1.3 (3)
C5—C6—C7—O3 −176.25 (17) N1—C1'—C2'—C3' 175.48 (17)
O2—C6—C7—C8 −176.36 (18) C1'—C2'—C3'—C4' 0.7 (3)
C5—C6—C7—C8 4.0 (3) C2'—C3'—C4'—C5' 0.1 (3)
O3—C7—C8—C8A 178.89 (17) C2'—C3'—C4'—N1' 179.83 (18)
C6—C7—C8—C8A −1.4 (3) O2'—N1'—C4'—C3' −175.7 (2)
C6—C5—C4A—C8A −0.8 (2) O1'—N1'—C4'—C3' 2.5 (3)
C6—C5—C4A—C4 −179.93 (16) O2'—N1'—C4'—C5' 4.1 (3)
O1—C4—C4A—C8A −177.59 (16) O1'—N1'—C4'—C5' −177.7 (2)
C3—C4—C4A—C8A 1.8 (2) C3'—C4'—C5'—C6' −0.2 (3)
O1—C4—C4A—C5 1.6 (2) N1'—C4'—C5'—C6' 179.99 (19)
C3—C4—C4A—C5 −179.05 (16) C4'—C5'—C6'—C1' −0.4 (3)
C2—N1—C8A—C4A −3.3 (2) C2'—C1'—C6'—C5' 1.1 (3)
C1'—N1—C8A—C4A 171.27 (15) N1—C1'—C6'—C5' −175.66 (18)
C2—N1—C8A—C8 175.52 (16)

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
C2′—H2′···O1i 0.93 2.53 3.320 (2) 143
C10—H103···O1′ii 0.96 2.60 3.512 (3) 160

Symmetry codes: (i) −x+1, −y+2, −z+1; (ii) −x, −y+1, −z+1.

References

  1. Bruker (2016). APEX3, SAINT-Plus and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA.
  2. Cygler, M. & Huber, C. P. (1985). Acta Cryst. C41, 1052–1055.
  3. Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179. [DOI] [PMC free article] [PubMed]
  4. Hanahan, D. & Weinberg, R. A. (2011). Cell, 144, 646–674. [DOI] [PubMed]
  5. Hirano, J., Hamase, K., Akita, T. & Zaitsu, K. (2008). Luminescence, 23, 350–355. [DOI] [PubMed]
  6. Lai, M.-J., Chang, J.-Y., Lee, H.-Y., Kuo, C.-C., Lin, M.-H., Hsieh, H.-P., Chang, C.-Y., Wu, J.-S., Wu, S.-Y., Shey, K.-S. & Liou, J.-P. (2011). Eur. J. Med. Chem. 46, 3623–3629. [DOI] [PubMed]
  7. Lu, Y., Chen, J., Xiao, M., Li, W. & Miller, D. D. (2012). Pharm. Res. 29, 2943–2971. [DOI] [PMC free article] [PubMed]
  8. Macrae, C. F., Bruno, I. J., Chisholm, J. A., Edgington, P. R., McCabe, P., Pidcock, E., Rodriguez-Monge, L., Taylor, R., van de Streek, J. & Wood, P. A. (2008). J. Appl. Cryst. 41, 466–470.
  9. Nguyen, T. L., McGrath, C., Hermone, A. R., Burnett, J. C., Zaharevitz, D. W., Day, B. W., Wipf, P., Hamel, E. & Gussio, R. (2005). J. Med. Chem. 48, 6107–6116. [DOI] [PubMed]
  10. Parker, A. L., Kavallaris, M. & McCarroll, J. A. (2014). Front. Oncol. 4, 1–19. [DOI] [PMC free article] [PubMed]
  11. Patil, S. A., Patil, R. & Miller, D. D. (2012). Future Med. Chem. 4, 2085–2115. [DOI] [PubMed]
  12. Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8.
  13. Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8.
  14. Wang, X.-F., Wang, S.-B., Ohkoshi, E., Wang, L.-T., Hamel, E., Qian, K., Morris-Natschke, S. L., Lee, K.-H. & Xie, L. (2013). Eur. J. Med. Chem. 67, 196–207. [DOI] [PMC free article] [PubMed]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989017002948/su5354sup1.cif

e-73-00441-sup1.cif (623.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989017002948/su5354Isup2.hkl

e-73-00441-Isup2.hkl (251.1KB, hkl)

Supporting information file. DOI: 10.1107/S2056989017002948/su5354Isup3.cml

CCDC reference: 1533984

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Crystallographic Communications are provided here courtesy of International Union of Crystallography

RESOURCES