Table 1.
E. antarcticum B7 genes involved in metabolic pathways of cold adaptation. Next to the name of the genes are the Log2FC values and p-values of the transcriptome assays published by Dall’Agnol and colleagues [40]. Pseudogenes are identified in parentheses.
| Genes | Log2FC | p-Value | Genes | Log2FC | p-Value |
|---|---|---|---|---|---|
| Cold shock proteins | De novo synthesis of fatty acids | ||||
| csp1 | 1.94 | 0 | accA | 0.45 | 0.01 |
| csp2 | 2.16 | 5.43 × 10−194 | accB | −0.05 | 0.01 |
| csp3 | 2.30 | 0 | accC | −0.56 | 5.68 × 10−27 |
| csp4 | 2.46 | 0 | accD | −0.28 | 7.55 × 10−4 |
| csp5 | −1.06 | 3.73 × 10−35 | fapR | 0.58 | 4.80 × 10−21 |
| csp6 | −1.28 | 4.41 × 10−194 | plsX | 0.77 | 2.31 × 10−46 |
| Desaturation of membrane fatty acids | fabD | 0.94 | 2.92 × 10−85 | ||
| desK | 7.03 | 8.15 × 10−16 | fabG | 0.85 | 8.42 × 10−63 |
| desR | −0.48 | 9.37 × 10−8 | fabH1 | 0.85 | 2.67 × 10−26 |
| Transport of compatible solutes | fabF | 0.69 | 3.46 × 10−16 | ||
| opuCA | 3.17 | 1.99 × 10−62 | fabI | −1.74 | 0 |
| opuCC | 1.61 | 3.06 × 10−29 | plsC | −0.82 | 1.28 × 10−6 |
| opuE | 3.70 | 4.26 × 10−16 | Carotenoid biosynthesis | ||
| opuCD | −2.72 | 8.67 × 10−24 | crtI (pseudo) | 3.94 | 4.65 × 10−43 |
| opuBA | −0.52 | 6.11 × 10−4 | yisP1 (pseudo) | −1.33 | 3.09 × 10−41 |
| yisP2 | 0.75 | 2.16 × 10−7 | |||