Abstract
Disease recurrence is the major problem in the treatment of acute myeloid leukemia (AML). Relapse is driven by leukemia stem cells, a chemoresistant subpopulation capable of re-establishing disease. Patients with p53 mutant AML are at an extremely high risk of relapse. B-cell-specific Moloney murine leukemia virus integration site 1 (BMI-1) is required for the self-renewal and maintenance of AML stem cells. Here we studied the effects of a novel small molecule inhibitor of BMI-1, PTC596, in AML cells. Treatment with PTC596 reduced MCL-1 expression and triggered several molecular events consistent with induction of mitochondrial apoptosis: loss of mitochondrial membrane potential, BAX conformational change, caspase-3 cleavage and phosphatidylserine externalization. PTC596 induced apoptosis in a p53-independent manner. PTC596 induced apoptosis along with the reduction of MCL-1 and phosphorylated AKT in patient-derived CD34+CD38low/− stem/progenitor cells. Mouse xenograft models demonstrated in vivo anti-leukemia activity of PTC596, which inhibited leukemia cell growth in vivo while sparing normal hematopoietic cells. Our results indicate that PTC596 deserves further evaluation in clinical trials for refractory or relapsed AML patients, especially for those with unfavorable complex karyotype or therapy-related AML that are frequently associated with p53 mutations.
Introduction
Acute myeloid leukemia (AML) is a clonal hematopoietic disorder resulting from genetic alterations in normal hematopoietic stem cells. AML is a disease of older adults, with a median age at diagnosis of ~70 years.1 The outcome of AML remains unsatisfactory, especially in elderly patients who often suffer from unfavorable complex karyotype or therapy-related AML and are generally ineligible for allogeneic stem cell transplantation.2, 3 The 5-year survival rate is only 3–8% for patients over age 60 and 30–40% for younger patients.1, 2, 3 Recent studies have shown that mutations of the tumor suppressor p53 occur frequently in patients with complex karyotype (60–80%) and therapy-related AML (30%).4, 5 More importantly, p53 mutations are an independent predictor of very poor outcome (survival at 3 years of ~0%).6 Therefore, the development of novel agents that induce AML cell death through p53-independent mechanisms is critical.7
Leukemia stem cells are constitutionally resistant to chemotherapeutic agents and thus represent a major obstacle in establishing a successful cure for AML. Studies have demonstrated that B-cell-specific Moloney murine leukemia virus integration site 1 (BMI-1) has vital roles in the self-renewal and maintenance of AML stem cells,8, 9 as well as normal hematopoietic stem cells.8, 10, 11, 12 BMI-1 represses the transcription of a range of target genes, including CDKN2A (which encodes INK4A and ARF) and HOX cluster genes.13, 14 BMI-1 has been reported to be overexpressed in AML,15, 16 and the TCGA data sets in the cBioPortal for Cancer Genomics (http://www.cbioportal.org/) show that AML cells express the highest levels of BMI-1 among 30 cancer cell types.17, 18 Importantly, higher levels of BMI-1 have been associated with more aggressive disease and poorer outcome for AML patients.15, 16, 19 As BMI-1 knockdown has been found to impair self-renewal and induce apoptosis in AML stem cells,20 we hypothesized that a therapeutic strategy targeting BMI-1 could eradicate chemoresistant AML stem cells. BMI-1 and p53 function in the BMI-1–ARF–MDM2–p53 signaling pathway,7 and reduced BMI-1 expression could potentially trigger p53-mediated apoptosis. The relative contribution of p53-dependent apoptosis to total apoptosis induced by BMI-1 knockdown, however, has not been clarified in AML.20
Recently, researchers have reported the preclinical utility of the first BMI-1 inhibitor PTC-209 in various cancers including colorectal cancer,21 biliary tract cancer,22 breast cancer,23 ovarian cancer,24 prostate cancer,25 chronic myeloid leukemia,26 multiple myeloma27 and AML.19 In mouse models with patient-derived colorectal cancer, PTC-209 potently suppressed tumor growth and eradicated cancer-initiating cells.21 We reported that PTC-209 induces apoptosis in AML patient-derived CD34+CD38low/− stem/progenitor cells.19 Unfortunately, PTC-209 is not suitable for use in humans because of its limited potency and poor pharmacokinetic properties, and it has not entered clinical trials. PTC596 is another small molecule that was identified in a high-throughput small molecule library screen as potent repressor of BMI-1 in tumor cells, with a favorable safety profile.28 PTC596 has entered a Phase 1 clinical trial in patients with advanced solid tumors (NCT02404480). Early mechanism-of-action studies suggested that PTC596 induces binding of CDK1 to BMI-1 and CDK1-mediated phosphorylation of BMI-1 at two novel N-terminal sites, leading to degradation of BMI-1.28 In this study, we investigated preclinical in vitro and in vivo activities of PTC596 and the mechanisms of action in AML, having special attention to p53-dependency in inducing apoptosis.
Materials and methods
PTC596 synthesis and other reagents
A high-throughput small molecule library screen at PTC Therapeutics, South Plainfield, NJ, USA, identified candidates that reduce endogenous BMI-1 levels in tumor cells; after chemical optimization through structure-activity-relationships followed by in vitro and in vivo studies, PTC596 was discovered.28 Cycloheximide, MG132 and Z-VAD-FMK were purchased from Axxora (San Diego, CA, USA). The selective small molecule antagonist of MDM2, Nutlin-3a, was purchased from Cayman Chemical Company (Ann Arbor, MI, USA).
Cell culture
Cell lines were cultured in RPMI 1640 medium containing 10% heat-inactivated fetal bovine serum. MOLM-13, MOLM-14, OCI-AML3 and MV4-11 cells express wild-type p53, whereas U-937 (p.G187_splice), HL-60 (p.M1_*394del) and K562 (p.Q136fs*13) cells have p53 mutations. Cell lines were harvested in log-phase growth, seeded at a density of 1–2 × 105 cell/ml and exposed to compounds. Cell viability was evaluated by triplicate counts of Trypan blue dye-excluding cells. Patient samples were analyzed under the protocol approved by the institutional review board at Saga University (2014-10-5). Heparinized peripheral blood or bone marrow samples were obtained from AML patients after informed consent, according to institutional guidelines per the Declaration of Helsinki. Primary AML cells were seeded at density of 5 × 105 to 1 × 106 cells/ml cultured in the StemSpan SFEM medium with StemSpan CC100 cytokine cocktail (Stem Cell Technologies, Vancouver, Canada), and were exposed to PTC596. PTC596 was provided by PTC Therapeutics, South Plainfield, NJ, USA.
Transfection of BMI-1 siRNA
MOLM-13 and U-937 cells were transfected with small interfering RNA (siRNA) oligonucleotides with the Amaxa Nucleofector 2b device, using the Nucleofector Kit C (program X-001 for MOLM-13 cells and W-001 for U-937 cells; Lonza, Basel, Switzerland). Cells were transfected with negative control siRNA or with BMI-1 siRNA (HSS101040; Life Technologies, Carlsbad, CA, USA).
Stable transduction of BMI-1 cDNA
Stable MOLM-13 and K562 cell lines overexpressing BMI-1 were established as described previously.9, 12
Flow cytometric analysis
For apoptosis analysis, flow cytometric determination of annexin V binding, mitochondrial membrane potential loss (Δψm), conformational change in BAX and caspase-3 cleavage were carried out.29 For gating stem/progenitor population (CD34+CD38low/− cells) in primary AML samples, anti-human CD34 and CD38 antibodies (BD Biosciences, San Jose, CA, USA) were used. Cell cycle distribution was analyzed by the Click-iT EdU incorporation kit (Life Technologies). Staining of intracellular BMI-1 and p53 was performed as described previously.19, 30 Expression level was measured as the mean fluorescence intensity ratio (MFIR) calculated by the formula: MFIR=(MFI for specific antibody)/(MFI for isotype control).
CyTOF
Surface and intracellular staining and single-cell CyTOF (time-of-flight mass cytometry) analysis were performed as described previously.31 Data were saved in FCS3.0 format and analyzed by FlowJo software (version 10.1 for MacOS X; FlowJo, LLC, Ashland, OR, USA).
Western blot analysis
Western blot analysis was performed as previously described.30 Antibodies against BMI-1, Histone H2A, Cyclin B1, CDK1, phosphorylated CDK1, phosphorylated CDK2, Securin and β-ACTIN were purchased from Cell Signaling Technology (Danvers, MA, USA); ubiquitinated histone H2A from EMD Millipore (Darmstadt, Germany); CDK2 from Santa Cruz Biotechnology (Santa Cruz, CA, USA); BCL-2 from Dako (Glostrup, Denmark); BCL-XL, MCL-1 and BAX from BD Biosciences; and conformation-specific BAX from Trevigen (Gaithersburg, MD, USA).
Quantitative real-time PCR
The mRNA expression levels were quantified using TaqMan gene expression assays (BMI1, Hs00995536_m1; MCL1, Hs01050896_m1; GAPDH, Hs99999905_m1; Applied Biosystems, Foster City, CA, USA).
TP53 mutation analysis
Mutation analysis of TP53 was performed as previously described.32
Animal experiments
Animal studies were conducted in accordance with the guidelines approved by the Institutional Animal Care and Use Committees at the Saga University and Rutgers University. Three xenograft models were utilized. In the first model, 1 × 106 MOLM-13 cells were injected intravenously into non-obese diabetic-severe combined immunodeficiency (NOD-SCID)/IL2Rγ-KO (NSG) mice (Jackson Laboratory, Bar Harbor, ME, USA). One day after injection (day 1), mice were randomized into two groups and treated with vehicle (0.5% hydroxypropyl methylcellulose and 0.1% Tween 80 in distilled water) or PTC596 (5 mg/kg) by oral gavage every 3 days (12 mice/group). On day 13, circulating leukemia cells were detected by flow cytometry using human- and mouse-specific anti-CD45 antibodies (BD Bioscience). Mice were killed if they became morbid or had a weight loss of 20% or greater, and survival was determined. In the second model, 2 × 107 K562 cells (mixed 1:1 with matrigel) were injected subcutaneously into the lower right flank of C.B17 SCID mice (Taconic Laboratories, Hudson, NY, USA). After tumors were established (11 days later), mice were randomized into two groups (eight mice/group) matched for tumor volume. Mice were then orally dosed with vehicle or PTC596 (20 mg/kg) once a week, and tumor sizes were measured. In the third model, 1 × 107 HL-60 cells were injected intravenously into NOD-SCID mice. Three days after injection, mice were randomized into three groups. Mice were orally dosed with vehicle (9 mice) or PTC596 (10 or 12.5 mg/kg, seven mice/group) twice a week until death, and survival was determined. To investigate if PTC596 affects normal hematopoiesis, the spleen colony-forming unit assay was performed. Bone marrow cells (50 000 cells) were collected from donor C57BL/6 mice (three mice/group) 2 weeks after a single oral dose of vehicle, two oral doses of 20 mg/kg PTC596 given 1 week apart or a single intraperitoneal injection of 150 mg/kg 5-FU. The bone marrow cells (5 × 104 cells/mouse) were transplanted into lethally irradiated (10 Gy) mice (10 mice/group). Eleven days after transplantation, macroscopic colonies were counted after fixation of spleens in Carnoy's solution.
Statistical analysis
Statistical analysis was carried out using the two-tailed Student t-test, Mann–Whitney U-test, paired t-test or one-way analysis of variance with Dunnett's post hoc multiple comparison test. P-values<0.05 were considered statistically significant. Unless otherwise indicated, average values are expressed as the mean±s.d. Power calculations were used to determine the appropriate sample sizes in mice experiments. The Kaplan–Meier method was used to generate survival curves for animal studies, and the log-rank test was used to test the survival difference among the groups of subjects with different treatments.
Results
PTC596 inhibits cell growth and induces apoptosis in AML cell lines in a p53-independent manner
After we confirmed that BMI-1 expression is reduced in AML cells after exposure to PTC596 (Figure 1a), we examined the effect of PTC596 on the viability of AML cell lines. The ED50 (effective concentration inducing 50% cell killing as measured by annexin V positivity) and IC50 (concentration at which cell growth is inhibited by 50%) values at 48 h are summarized in Table 1. PTC596-induced apoptosis, as evidenced by annexin V positivity, was directly correlated with the percentage of trypan blue uptake (data not shown). PTC596 induced apoptosis in a dose- (Figure 1b) and time-dependent (Supplementary Figure S1a) manner. The average IC50 and ED50 values among six cell lines were 30.7±4.1 nM and 60.3±6.7 nM (mean±s.e.m.), respectively, indicating nanomolar potency. Importantly, p53 mutant U-937 and HL-60 cells were as sensitive to PTC596 as p53 wild-type cells (Figure 1b and Table 1). The basal level of BMI-1 was not correlated with IC50 (r=0.019, P=0.97) or ED50 (r=0.21, P=0.68; Table 1).
Table 1. ED50, IC50, p53 mutational status and BMI-1 protein levels in AML cell lines.
Cell lines | ED50 (nM) | IC50 (nM) | p53 mutation status | BMI-1 levels (MFIR) |
---|---|---|---|---|
MOLM-13 | 61.5 | 22.4 | Wild-type | 3.7 |
OCI-AML3 | 60.3 | 45.6 | Wild-type | 1.0 |
MOLM-14 | 52.5 | 22.4 | Wild-type | 4.7 |
MV4-11 | 41.6 | 40.6 | Wild-type | 1.1 |
U-937 | 55.4 | 27.9 | Mutant | 5.3 |
HL-60 | 90.4 | 25.1 | Mutant | 0.7 |
OCI-AML3 ShC | 52.5 | 30.9 | ||
OCI-AML3 Shp53 | 57.2 | 29.7 | ||
MOLM-13 ShC | 32.8 | 20.5 | ||
MOLM-13 Shp53 | 44.7 | 21.4 | ||
MV4-11 ShC | 57.5 | 41.1 | ||
MV4-11 Shp53 | 66.3 | 34.5 |
Abbreviations: MFIR, mean fluorescence intensity ratio; ShC, shRNA control. Shp53, p53 shRNA. MFIR was normalized to that of OCI-AML3 cells.
To determine whether PTC596 induces p53-independent apoptosis, we examined the effect of PTC596 on stable p53 knockdown OCI-AML3 cells. Western blot analysis revealed that p53-specific short hairpin RNA reduced p53 levels by 84% (Figure 1c). The selective MDM2 inhibitor Nutlin-3a has been found to potently reactivate wild-type p53 and induce apoptosis in AML.32 p53 knockdown cells were significantly less sensitive to Nutlin-3a compared with control cells expressing a scrambled target sequence, indicating an efficient inhibition of p53-induced apoptosis (Figure 1d). In contrast, PTC596 induced apoptosis both in p53 knockdown OCI-AML3 cells and control cells (Figure 1d). Stable p53 knockdown cells were also generated in MOLM-13 and MV4-11 cells, and p53-specific short hairpin RNA reduced p53 levels by 69% and 90%, respectively. As shown in Table 1, the IC50 and ED50 values for PTC596 were not significantly different between p53 knockdown and control cells.
We next investigated if PTC596 treatment induced p53 in AML cells, as BMI-1 may potentially suppress p53 through ARF–MDM2-p53 signaling. The MDM2 inhibitor Nutlin-3a served as positive control. As shown in Supplementary Figure S1b, PTC596 did not increase p53 levels in any of the three AML cell lines examined. To investigate the biological consequences of BMI-1 expression in AML, BMI-1 levels were reduced by siRNA transfection in MOLM-13 cells. BMI-1-specific siRNA led to reduced BMI-1 protein expression by 51% but p53 expression level was not increased in BMI-1 knockdown cells (Supplementary Figure S1c). These data suggest that p53-mediated signaling is not involved in PTC596-induced apoptosis.
BMI-1 overexpression desensitizes AML cells to PTC596-induced apoptosis
We next investigated if overexpressed BMI-1 protects leukemia cells from PTC596-induced apoptosis. MOLM-13 cells overexpressing BMI-1 (MOLM-13/BMI-1) showed 3.8 times higher levels of BMI-1 than empty vector control (MOLM-13/EV) cells (Figure 2a). Although BMI-1 levels did not affect cell sensitivity to Nutlin-3a (Figure 2b), MOLM-13/BMI-1 cells were significantly less sensitive to PTC596 than MOLM-13/EV cells (Figure 2c). Higher concentration of PTC596 reduced BMI-1 expression levels even in MOLM-13/BMI-1 cells (Figure 2d), which might be associated with the smaller protective effect. We also established a stable K562 cell line with overexpressed BMI-1, and again, BMI-1 overexpression desensitized cells to PTC596-induced apoptosis (Supplementary Figure S2). These data indicate on-target BMI-1 inhibition by PTC596.
PTC596 causes mitotic arrest in a p53-independent manner
Because PTC596 showed potent anti-proliferative effects against AML cells independent of p53 mutation status, we investigated the cell cycle distribution of p53 wild-type MOLM-13 and p53-defective U-937 cells after a 10-h treatment with 200 nM PTC596. At this time point, PTC596 did not show significant apoptosis. PTC596 treatment led to an accumulation of cells in G2/M phase, whereas the percentage of cells in G1 phase decreased both in MOLM-13 (Figure 3a) and U-937 cells (Supplementary Figure S3a), indicating p53-independent G2/M arrest. May-Grünwald–Giemsa staining showed morphological features of mitotic arrest, including breakdown of the nuclear membrane and chromatin condensation in MOLM-13 and U-937 cells after 10 h of exposure to 200 nM PTC596 (Supplementary Figure S3b).
To further clarify PTC596-induced cell cycle arrest in AML, changes in protein levels of G2/M regulators were determined in MOLM-13 cells after exposure to PTC596. As shown in Figure 3b, treatment with PTC596 at 110 nM or higher concentrations significantly reduced protein levels of BMI-1 and its downstream target ubiquitinated histone H2A. In accordance with previous studies,28 a shifted band of BMI-1, which has been thought to be phosphorylated BMI-1, was observed along with a decrease in non-phosphorylated BMI-1 levels. Levels of phosphorylated CDK1 (T161) and phosphorylated CDK2 (T160) were both increased, supporting the observed accumulation of cells in G2/M phase. More specifically, PTC596 increased cyclin B1 and securin levels, indicating that the cells were not able to progress beyond the spindle checkpoint.
PTC596 reduces anti-apoptotic MCL-1 levels and induces mitochondrial apoptosis in AML
To investigate if PTC596 induces apoptosis through the intrinsic pathway, BAX conformational change, caspase-3 cleavage and ΔΨm were determined in MOLM-13 and U-937 cells. PTC596 induced BAX activation, caspase-3 cleavage and ΔΨm loss in both cell lines (Figure 4a and Supplementary Figure S4a), indicating mitochondrial apoptosis. As BCL-2 family proteins maintain ΔΨm, BCL-2, BCL-XL, MCL-1 and BAX protein levels were determined. Interestingly, PTC596 decreased MCL-1 levels in a dose-dependent manner in both cells (Figure 4b and Supplementary Figure S4b), indicating a p53-independent effect. Levels of BCL-2, BCL-XL and BAX were not changed significantly. The reduction of MCL-1 started as early as 8 h after exposure (Figure 4c). BMI-1 levels were reduced in MOLM-13 and U-937 cells using siRNA. As shown in Supplementary Figure S5a, acute BMI1 knockdown was associated with decreased levels of MCL-1. Neither PTC596 treatment nor siRNA-induced BMI1 knockdown affected expression levels of MCL1 mRNA (Supplementary Figure S5b).
To elucidate how BMI-1 inhibition by PTC596 reduces MCL-1 levels, we treated MOLM-13 cells with 200 nM PTC596 for 20 h, either alone or in combination after 1-h preincubation with 7 μM cycloheximide, 0.5 μM MG132 or 25 μM Z-VAD-FMK. The protein synthesis inhibitor cycloheximide did not significantly affect the rate of decrease in MCL-1 levels after PTC596 treatment (Figure 4d), implying that PTC596 inhibits new protein synthesis. The proteasome inhibitor MG132 and the pan-caspase inhibitor Z-VAD-FMK both blocked MCL-1 reduction after PTC596 treatment (Figure 4d), suggesting that PTC596 enhances proteasome- and caspase-mediated degradation of MCL-1. These data suggest that PTC596 reduces MCL-1 expression through post-transcriptional protein synthesis inhibition and accelerated degradation, destabilizing mitochondrial membrane potential and inducing mitochondrial apoptosis.
PTC596 induces apoptosis in CD34+CD38low/− AML stem/progenitor cells
We next examined the apoptotic effects of PTC596 on primary cells from 13 patients with AML. The patient characteristics are summarized in Table 2. Five patients harbored a complex karyotype that is closely associated with mutant p53 status. As shown in Figure 5a, treatment of primary AML cells with PTC596 caused a dose-dependent increase in the percentage of annexin V-positive cells. A PTC596-specific increase in the proportion of annexin V-positive cells of >30% was observed in 10 of 13 (77%) primary AML samples after exposure to 500 nM PTC596. Importantly, immature CD34+ (CD38low/−) AML cells were more susceptible to PTC596 than mature AML cells (Figure 5b, Supplementary Figure S6a). In contrast, complex karyotype was not a predictor for an inferior sensitivity to PTC596 (Supplementary Figure S6b). Two PTC596-sensitive samples with complex karyotype were available for p53 sequence analysis. One sample had a non-functional p53 mutation (p.M237K), implying that PTC596 induces apoptosis in p53-defective cells (Supplementary Figure S6).
Table 2. Clinical data for AML patients.
No. | Age (y/sex) | Status | Cytogenetics | Source | Blasts (%) | CD34a (%) |
---|---|---|---|---|---|---|
1 | 71/F | New | 46,XX | PB | > 90 | 98.9 |
2 | 76/M | New | Complex | PB | 28.8 | 92.3 |
3 | 52/M | New | 46,XY | BM | 79.2 | 72.2 |
4 | 54/M | New | 46,XX,t(8;21)(q22;q22) | BM | 78.4 | 82.9 |
5 | 58/M | New | 46,XY | BM | > 90 | 1.3 |
6 | 68/M | New | Complex | PB | 34 | NA |
7 | 69/M | New | Complex | PB | 40 | NA |
8 | 38/F | New | 46,XX | BM | 84.8 | 2.9 |
9 | 66/M | New | 46,XY,del(7q) | BM | 26 | 53.0 |
10 | 84/F | New | Complex | PB | 60 | NA |
11 | 86/M | New | Complex | BM | 48 | 87.0 |
12 | 58/M | Relapse | 46,XY | PB | 84 | 0.2 |
13 | 87/F | Relapse | 46,XX,inv(16)(p13.1;q22),add(18)(q21) | BM | 60 | 7.0 |
Abbreviations: BM, bone marrow; NA, not analyzed; PB, peripheral blood.
The percentage of CD34+ cells was determined by flow cytometry in isolated bone marrow mononuclear cells or peripheral blood mononuclear cells.
To investigate if PTC596 reduces MCL-1 expression in AML stem/progenitor cells, cellular MCL-1 levels were determined in an AML patient sample using CyTOF. As shown in Supplementary Figure S7, PTC596 reduced MCL-1 expression in AML cells, which was most prominent in the CD34+CD38low/− stem/progenitor population. MCL-1 expression is controlled by multiple signaling pathways.33, 34 We therefore investigated the upstream activators and signaling proteins for MCL-1, including p-ERK1/2 (Thr202/Tyr204), p-AKT (Ser473), p-STAT3 (Thy705) and p-STAT5 (Thy694). In accordance with changes in MCL-1, PTC596 reduced protein expression of MCL-1 inducers, which was most prominent with p-AKT (42.8% reduction). The PI3K/Akt pathway has been shown to promote protein synthesis of MCL-1 while inhibiting its degradation.35, 36
PTC596 inhibits myeloid leukemia cell growth in vivo while sparing normal hematopoietic cells
We investigated in vivo anti-leukemia activities of PTC596 using myeloid leukemia xenograft models. In a highly aggressive MOLM-13 xenograft model, there was a significant reduction of circulating human CD45-positive cells after 13 days of treatment (Figure 6a). Peripheral blood was collected on day 11 from a vehicle-treated mouse as it became moribund, and circulating leukemia cells were detected in the mouse (open circle; Figure 6a). Survival of PTC596-treated mice was significantly longer than the vehicle-treated group (median survival: 16.5 days versus 13.0 days, P<0.0001 by log-rank test; Figure 6b). In the K562-bearing mice, the mean tumor volume of mice treated with PTC596 was significantly smaller than that of control mice (Supplementary Figure S8a). Anti-leukemic activity of PTC596 was further confirmed in the HL-60 xenograft model, in which PTC596 significantly prolonged mouse survival compared with the vehicle-treated mice in a dose-dependent manner (Supplementary Figure S8b). The effect of PTC596 on normal hematopoiesis was determined by the spleen colony-forming unit assay, and the colony numbers were not statistically different between the PTC596- and vehicle-treated groups (Supplementary Figure S8c).
Discussion
In this study, we provide evidence that the small molecule BMI-1 inhibitor PTC596, currently in phase 1 clinical trial in patients with advanced solid tumors, induces mitochondrial apoptosis in AML cell lines and primary blasts. The major advantages of this novel strategy to target BMI-1 in AML by PTC596 were as follows: (1) nanomolar potency; (2) high apoptotic activity against CD34+CD38low/− stem/progenitor cells in primary blasts; and (3) p53 independency in inducing apoptosis. In AML, p53 mutations have been almost exclusively found in patients with unfavorable complex karyotype or therapy-related AML.4, 5 In addition, p53 mutation is itself an independent predictor of extremely poor outcome.6 Therefore, PTC596 deserves further evaluation in clinical trials for refractory or relapsed AML, regardless of the presence of unfavorable karyotype or p53 mutations in leukemia blasts.
BMI-1 resides upstream of ARF in the BMI-1–ARF–MDM2–p53 signaling pathway and may potentially promote MDM2-mediated p53 degradation.7 In addition, BMI-1 has been recently found to directly bind to p53 and promote p53 ubiquitination and degradation.37 One may therefore expect that BMI-1 inhibition would lead to increased levels of cellular p53. In AML cells, however, neither PTC596 treatment nor acute BMI-1 knockdown by siRNA increased p53 protein levels. Previous studies have shown that conventional Bmi1 knockout (Bmi1−/−) mice develop bone marrow failure and die <2 months after birth.10, 38, 39, 40 However, p53 expression was not determined in those studies. Primary mouse embryonic fibroblasts derived from Bmi1−/− embryos and those from Bmi1+/+ embryos express similar protein levels of p53.41 Higher p53 expression in Bmi1 gene-deleted cells compared with Bmi1+/+ cells were reported in neuronal cells, but the differences were modest (less than twofold) at the protein level.42, 43 p53 expression has been investigated in association with BMI1 overexpression or knockdown. In breast cancer cells, modulation of BMI1 did not significantly change p53 protein levels.44 In contrast, BMI-1 has been shown to have a negative impact on p53 expression in neuroblastoma cell lines.37, 45 Calao et al.37 showed that BMI-1 promotes p53 ubiquitination and degradation, and Cui et al.45 demonstrated that BMI-1 blocks MYCN-driven p53 induction. We speculate that BMI-1 regulates p53 under specific circumstances or in specific cell types. A p53-independent activity of PTC596 might support the idea that p53-mediated signaling is dispensable for apoptosis induction by BMI-1 inhibition in AML.
We found that PTC596 treatment downregulates MCL-1 and induces mitochondrial apoptosis in AML cells. Some researchers have observed that BMI-1 positively regulates MCL-1 expression,27, 46 although the mechanism was not formally identified. MCL-1 is a critical anti-apoptotic BCL-2 family protein in AML.17, 18, 47, 48, 49, 50 MCL-1 is highly expressed in AML cells,17, 18, 47, 48 especially in the CD34+CD38− stem/progenitor cell population.47, 48 Recently, MCL-1 has been reported to be essential for AML development, survival and drug resistance.49, 50 In addition, elevated expression of MCL-1 at the time of relapse was reported in AML patients.51 MCL-1 is acutely regulated with a half-life of ~30 min, and its expression is controlled by multiple signaling pathways, including STAT3/5, PI3K/AKT and MEK/ERK pathways.33, 34, 35, 36 Among these pathways, the PI3K/AKT pathway has been shown to be upregulated by BMI-1,52, 53 and in turn upregulates MCL-1 by stimulating protein synthesis and inhibiting protein degradation.35, 36 In our study, PTC596 affected multiple processes of MCL-1 protein synthesis and degradation while reducing phosphorylated AKT levels, which may support the hypothesis that BMI-1 inhibition by PTC596 downregulates MCL-1 through PI3K/AKT pathway inhibition. The inhibitory effect of the BMI-1 inhibitor PTC596 on MCL-1 expression may enhance its therapeutic activity against AML stem/progenitor cells.
As BMI-1 is expressed in normal hematopoietic stem cells, the development of hematologic toxicity might be a concern in patients treated with PTC596. Recently, interim results of the first-in-human phase 1 study of PTC596 in advanced solid tumors have been reported.54 In the study, 19 patients have been enrolled at doses of 0.65, 1.3, 2.6, 5.2 and 10 mg/kg PTC596 and the plasma concentrations increased in a dose-proportional manner. Plasma concentrations at doses ⩾2.6 mg/kg exceeded those demonstrated to be efficacious in mouse xenograft models. Interestingly, hematologic toxicity equal to or greater than grade 2 has been observed only in one patient who received 10 mg/kg PTC596 and developed grade 4 neutropenia and thrombocytopenia. The ongoing clinical study would clarify if PTC596 has an acceptable toxicity profile in patients.
In summary, our data indicate that the novel BMI-1 inhibitor PTC596 downregulates MCL-1 and induces mitochondrial apoptosis in a p53-independent manner. PTC596 effectively killed CD34+CD38− AML stem/progenitor cells while sparing normal hematopoietic stem/progenitor cells. Our findings strongly encourage the development of BMI-1-targeted therapy for AML patients, especially for those with unfavorable complex karyotype or therapy-related AML that are frequently associated with p53 mutations.
Acknowledgments
We thank Dr Hiroaki Kitamura for technical help. This study was supported in part by grants from the Ministry of Education, Culture, Sports, Science and Technology in Japan (26461425; to KK), by the Princess Takamatsu Cancer Research Fund (14-24610; to KK), by a grant from the Ministry of Education, Culture, Sports, Science and Technology in Japan (16K09851; to YK).
Footnotes
Supplementary Information accompanies this paper on Blood Cancer Journal website (http://www.nature.com/bcj)
Min Jung Kim, Liangxian Cao, Marla Weetall and Arthur Branstrom are employees of PTC Therapeutics, a clinical stage biopharmaceutical company that develops selective inhibitors of BMI-1. Thomas W Davis is a former employee of PTC Therapeutics.
Supplementary Material
References
- Oran B, Weisdorf DJ. Survival for older patients with acute myeloid leukemia: a population-based study. Haematologica 2012; 97: 1916–1924. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Döhner H, Weisdorf DJ, Bloomfield CD. Acute myeloid leukemia. N Engl J Med 2015; 373: 1136–1152. [DOI] [PubMed] [Google Scholar]
- Juliusson G, Antunovic P, Derolf A, Lehmann S, Mollgard L, Stockelberg D et al. Age and acute myeloid leukemia: real world data on decision to treat and outcomes from the Swedish Acute Leukemia Registry. Blood 2009; 113: 4179–4187. [DOI] [PubMed] [Google Scholar]
- Rucker FG, Schlenk RF, Bullinger L, Kayser S, Teleanu V, Kett H et al. TP53 alterations in acute myeloid leukemia with complex karyotype correlate with specific copy number alterations, monosomal karyotype, and dismal outcome. Blood 2012; 119: 2114–2121. [DOI] [PubMed] [Google Scholar]
- Shih AH, Chung SS, Dolezal EK, Zhang SJ, Abdel-Wahab OI, Park CY et al. Mutational analysis of therapy-related myelodysplastic syndromes and acute myelogenous leukemia. Haematologica 2013; 98: 908–912. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Grossmann V, Schnittger S, Kohlmann A, Eder C, Roller A, Dicker F et al. A novel hierarchical prognostic model of AML solely based on molecular mutations. Blood 2012; 120: 2963–2972. [DOI] [PubMed] [Google Scholar]
- Kojima K, Ishizawa J, Andreeff M. Pharmacological activation of wild-type p53 in the therapy of leukemia. Exp Hematol 2016; 44: 791–798. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lessard J, Sauvageau G. Bmi-1 determines the proliferative capacity of normal and leukaemic stem cells. Nature 2003; 423: 255–260. [DOI] [PubMed] [Google Scholar]
- Yuan J, Takeuchi M, Negishi M, Oguro H, Ichikawa H, Iwama A. Bmi1 is essential for leukemic reprogramming of myeloid progenitor cells. Leukemia 2011; 25: 1335–1343. [DOI] [PubMed] [Google Scholar]
- Park IK, Qian D, Kiel M, Becker MW, Pihalja M, Weissman IL et al. Bmi-1 is required for maintenance of adult self-renewing haematopoietic stem cells. Nature 2003; 423: 302–305. [DOI] [PubMed] [Google Scholar]
- Rizo A, Dontje B, Vellenga E, de Haan G, Schuringa JJ. Long-term maintenance of human hematopoietic stem/progenitor cells by expression of BMI1. Blood 2008; 111: 2621–2630. [DOI] [PubMed] [Google Scholar]
- Iwama A, Oguro H, Negishi M, Kato Y, Morita Y, Tsukui H et al. Enhanced self-renewal of hematopoietic stem cells mediated by the polycomb gene product Bmi-1. Immunity 2004; 21: 843–851. [DOI] [PubMed] [Google Scholar]
- Siddique HR, Saleem M. Role of BMI1, a stem cell factor, in cancer recurrence and chemoresistance: preclinical and clinical evidences. Stem Cells 2012; 30: 372–378. [DOI] [PubMed] [Google Scholar]
- Meng S, Luo M, Sun H, Yu X, Shen M, Zhang Q et al. Identification and characterization of Bmi-1-responding element within the human p16 promoter. J Biol Chem 2010; 285: 33219–33229. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chowdhury M, Mihara K, Yasunaga S, Ohtaki M, Takihara Y, Kimura A Expression of Polycomb-group. (PcG) protein BMI-1 predicts prognosis in patients with acute myeloid leukemia. Leukemia 2007; 21: 1116–1122. [DOI] [PubMed] [Google Scholar]
- Saudy NS, Fawzy IM, Azmy E, Goda EF, Eneen A, Abdul Salam EM. BMI1 gene expression in myeloid leukemias and its impact on prognosis. Blood Cells Mol Dis 2014; 53: 194–198. [DOI] [PubMed] [Google Scholar]
- Gao J, Aksoy BA, Dogrusoz U, Dresdner G, Gross B, Sumer SO et al. Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal. Sci Signal 2013; 6: pl1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Cerami E, Gao J, Dogrusoz U, Gross BE, Sumer SO, Aksoy BA et al. The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data. Cancer Discov 2012; 2: 401–404. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nishida Y, Maeda A, Chachad D, Ishizawa J, Yi Hua Q, Kornblau SM et al. Preclinical activity of the novel BMI-1 inhibitor PTC-209 in acute myeloid leukemia: implications for leukemia therapy. Cancer Sci 2015; 106: 1705–1713. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rizo A, Olthof S, Han L, Vellenga E, de Haan G, Schuringa JJ. Repression of BMI1 in normal and leukemic human CD34(+) cells impairs self-renewal and induces apoptosis. Blood 2009; 114: 1498–1505. [DOI] [PubMed] [Google Scholar]
- Kreso A, van Galen P, Pedley NM, Lima-Fernandes E, Frelin C, Davis T et al. Self-renewal as a therapeutic target in human colorectal cancer. Nat Med 2014; 20: 29–36. [DOI] [PubMed] [Google Scholar]
- Mayr C, Wagner A, Loeffelberger M, Bruckner D, Jakab M, Berr F et al. The BMI1 inhibitor PTC-209 is a potential compound to halt cellular growth in biliary tract cancer cells. Oncotarget 2016; 7: 745–758. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dimri M, Kang M, Dimri GP. A miR-200c/141-BMI1 autoregulatory loop regulates oncogenic activity of BMI1 in cancer cells. Oncotarget 2016; 7: 36220–36234. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dey A, Mustafi SB, Saha S, Kumar Dhar Dwivedi S, Mukherjee P, Bhattacharya R. Inhibition of BMI1 induces autophagy-mediated necroptosis. Autophagy 2016; 12: 659–670. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bansal N, Bartucci M, Yusuff S, Davis S, Flaherty K, Huselid E et al. BMI-1 targeting interferes with patient-derived tumor-initiating cell survival and tumor growth in prostate cancer. Clin Cancer Res 2016; 22: 6176–6191. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mourgues L, Imbert V, Nebout M, Colosetti P, Neffati Z, Lagadec P et al. The BMI1 polycomb protein represses cyclin G2-induced autophagy to support proliferation in chronic myeloid leukemia cells. Leukemia 2015; 29: 1993–2002. [DOI] [PubMed] [Google Scholar]
- Bolomsky A, Schlangen K, Schreiner W, Zojer N, Ludwig H. Targeting of BMI-1 with PTC-209 shows potent anti-myeloma activity and impairs the tumour microenvironment. J Hematol Oncol 2016; 9: 17. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kim MJ, Cao L, Sheedy J, Risher N, Dumble M, Lee C-S et al. PTC596-induced Bmi1 hyper-phosphorylation via CDK1/2 activation resulting in tumor stem cell depletion. Cancer Research 2014; 74, Abstract 5517. [Google Scholar]
- Kojima K, Konopleva M, Tsao T, Andreeff M, Ishida H, Shiotsu Y et al. Selective FLT3 inhibitor FI-700 neutralizes Mcl-1 and enhances p53-mediated apoptosis in AML cells with activating mutations of FLT3 through Mcl-1/Noxa axis. Leukemia 2010; 24: 33–43. [DOI] [PubMed] [Google Scholar]
- Kojima K, Kornblau SM, Ruvolo V, Dilip A, Duvvuri S, Davis RE et al. Prognostic impact and targeting of CRM1 in acute myeloid leukemia. Blood 2013; 121: 4166–4174. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Han L, Qiu P, Zeng Z, Jorgensen JL, Mak DH, Burks JK et al. Single-cell mass cytometry reveals intracellular survival/proliferative signaling in FLT3-ITD-mutated AML stem/progenitor cells. Cytometry A 2015; 87: 346–356. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kojima K, Konopleva M, Samudio IJ, Shikami M, Cabreira-Hansen M, McQueen T et al. MDM2 antagonists induce p53-dependent apoptosis in AML: implications for leukemia therapy. Blood 2005; 106: 3150–3159. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Thomas LW, Lam C, Edwards SW. Mcl-1; the molecular regulation of protein function. FEBS Lett 2010; 584: 2981–2989. [DOI] [PubMed] [Google Scholar]
- Warr MR, Shore GC. Unique biology of Mcl-1: therapeutic opportunities in cancer. Curr Mol Med 2008; 8: 138–147. [DOI] [PubMed] [Google Scholar]
- Maurer U, Charvet C, Wagman AS, Dejardin E, Green DR. Glycogen synthase kinase-3 regulates mitochondrial outer membrane permeabilization and apoptosis by destabilization of MCL-1. Mol Cell 2006; 21: 749–760. [DOI] [PubMed] [Google Scholar]
- Aichberger KJ, Mayerhofer M, Krauth MT, Skvara H, Florian S, Sonneck K et al. Identification of mcl-1 as a BCR/ABL-dependent target in chronic myeloid leukemia (CML): evidence for cooperative antileukemic effects of imatinib and mcl-1 antisense oligonucleotides. Blood 2005; 105: 3303–3311. [DOI] [PubMed] [Google Scholar]
- Calao M, Sekyere EO, Cui HJ, Cheung BB, Thomas WD, Keating J et al. Direct effects of Bmi1 on p53 protein stability inactivates oncoprotein stress responses in embryonal cancer precursor cells at tumor initiation. Oncogene 2013; 32: 3616–3626. [DOI] [PubMed] [Google Scholar]
- van der Lugt NM, Domen J, Linders K, van Roon M, Robanus-Maandag E, te Riele H et al. Posterior transformation, neurological abnormalities, and severe hematopoietic defects in mice with a targeted deletion of the bmi-1 proto-oncogene. Genes Dev 1994; 8: 757–769. [DOI] [PubMed] [Google Scholar]
- Xie C, Jin J, Lv X, Tao J, Wang R, Miao D. Anti-aging effect of transplanted amniotic membrane mesenchymal stem cells in a premature aging model of Bmi-1 deficiency. Sci Rep 2015; 5: 13975. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Liu J, Cao L, Chen J, Song S, Lee IH, Quijano C et al. Bmi1 regulates mitochondrial function and the DNA damage response pathway. Nature 2009; 459: 387–392. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jacobs JJ, Kieboom K, Marino S, DePinho RA, van Lohuizen M. The oncogene and Polycomb-group gene bmi-1 regulates cell proliferation and senescence through the ink4a locus. Nature 1999; 397: 164–168. [DOI] [PubMed] [Google Scholar]
- Chatoo W, Abdouh M, David J. Champagne MP, Ferreira J, Rodier Fet al. The polycomb group gene Bmi1 regulates antioxidant defenses in neurons by repressing p53 pro-oxidant activity. J Neurosci 2009; 29: 529–542. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gu M, Shen L, Bai L, Gao J, Marshall C, Wu T et al. Heterozygous knockout of the Bmi-1 gene causes an early onset of phenotypes associated with brain aging. Age (Dordr) 2014; 36: 129–139. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wei F, Ojo D, Lin X, Wong N, He L, Yan J et al. BMI1 attenuates etoposide-induced G2/M checkpoints via reducing ATM activation. Oncogene 2015; 34: 3063–3075. [DOI] [PubMed] [Google Scholar]
- Cui H, Hu B, Li T, Ma J, Alam G, Gunning WT et al. Bmi-1 is essential for the tumorigenicity of neuroblastoma cells. Am J Pathol 2007; 170: 1370–1378. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gao R, Chen S, Kobayashi M, Yu H, Zhang Y, Wan Y et al. Bmi1 promotes erythroid development through regulating ribosome biogenesis. Stem Cells 2015; 33: 925–938. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yoshimoto G, Miyamoto T, Jabbarzadeh-Tabrizi S, Iino T, Rocnik JL, Kikushige Y et al. FLT3-ITD up-regulates MCL-1 to promote survival of stem cells in acute myeloid leukemia via FLT3-ITD-specific STAT5 activation. Blood 2009; 114: 5034–5043. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kornblau SM, Qutub A, Yao H, York H, Qiu YH, Graber D et al. Proteomic profiling identifies distinct protein patterns in acute myelogenous leukemia CD34+CD38- stem-like cells. PLoS One 2013; 8: e78453. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Glaser SP, Lee EF, Trounson E, Bouillet P, Wei A, Fairlie WD et al. Anti-apoptotic Mcl-1 is essential for the development and sustained growth of acute myeloid leukemia. Genes Dev 2012; 26: 120–125. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hermanson DL, Das SG, Li Y, Xing C. Overexpression of Mcl-1 confers multidrug resistance, whereas topoisomerase IIβ downregulation introduces mitoxantrone-specific drug resistance in acute myeloid leukemia. Mol Pharmacol 2013; 84: 236–243. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kaufmann SH, Karp JE, Svingen PA, Krajewski S, Burke PJ, Gore SD et al. Elevated expression of the apoptotic regulator Mcl-1 at the time of leukemic relapse. Blood 1998; 91: 991–1000. [PubMed] [Google Scholar]
- Du R, Xia L, Ning X, Liu L, Sun W, Huang C et al. Hypoxia-induced Bmi1 promotes renal tubular epithelial cell-mesenchymal transition and renal fibrosis via PI3K/Akt signal. Mol Biol Cell 2014; 25: 2650–2659. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wu J, Hu D, Zhang R. Depletion of Bmi-1 enhances 5-fluorouracil-induced apoptosis and autophagy in hepatocellular carcinoma cells. Oncol Lett 2012; 4: 723–726. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Shapiro G, Infante J, Bauer TM, Prawira A, Bedard P, Laskin O et al. Initial first-in-human phase 1 results of PTC596, a novel small molecule that targets cancer stem cells (CSC) by reducing BMI1 protein levels. Ann Oncol 2016; 27, Abstract 384P. [Google Scholar]
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