Table 1. BLOCK specific quantitative parameters for SHPs as obtained by APBEST analysis.
Name of Protein BLOCK | Divergence Rate* | Computed Ratio parameters | Residue diversity RD | € Dominant pair (D) | Class specific diversity CD | |||||||
R (%) | E (%) | N (%) | MDR or RDMAX | RDMIN | Acidic | Basic | Non-polar | Hydrophobic | Hydrophilic | |||
Ubiquitin | 0.1 | 42 | 42 | 18 | K (18.8) | C (0.5) | IV (5.1) | 30.5 | 34.8 | 49.8 | 50.7 | 78.6 |
G3PDH | 2.2 | 53 | 46 | 1 | V (21.2) | W (1.4) | IV (9.2) | 23.3 | 24 | 36.2 | 69.8 | 64.9 |
LDH | 3.4 | 55 | 56 | 0 | V (20.9) | W (1.8) | IV (7.6) | 18.8 | 21.9 | 44 | 69.4 | 66.1 |
Acid-protease | 9 | 62 | 52 | 2 | S (23.5) | C (1.6) | IV (4.7) | 16.5 | 13.5 | 57.3 | 68.6 | 69.6 |
Hemoglobin | 12 | 63 | 52 | 0 | L (26.7) | P (2.2) | FL (6.7) | 5.61 | 16.2 | 47.2 | 81.5 | 56.9 |
Ribonucleases | 21 | 67 | 57 | 0 | S (23.4) | W (3.3) | TS (4.1) | 15.9 | 38 | 56.4 | 58.2 | 81.8 |
Somatotropin | 25 | 76 | 44 | 13 | S (20.0) | W (0.1) | ED (5.0) | 21.6 | 22.9 | 55.2 | 62.8 | 80.4 |
Kappa-casein | 33 | 92 | 32 | 22 | V(26.4) | C (0.6) | VA(9.6) | 12.7 | 12.9 | 48.7 | 80.6 | 48.8 |
*percent/100 MYr; Divergence rates (second column of the table) for protein BLOCKs (first column) are taken from (Marks, 1988; Dayhoff and Schwartz, 1978). LDH: Lactate dehydrogenase; G3PDH: Glyceraldehyde 3-phosphate dehydrogenase; €Dominant pair indicates the hetero-pair type whose observed frequency is maximum for Block. |