Abstract
The retinylidene chromophore mutant (Y185F) of bacteriorhodopsin, in which Tyr-185 is substituted by phenylalanine, is examined and compared with wild-type bacteriorhodopsin expressed in Escherichia coli; both were reinstituted similarly in vesicles. The Y185F mutant shows (at least) two distinct spectra at neutral pH. Upon light absorption, the blue species (which absorbs in the red) behaves as if "dead"--i.e., neither its tyrosine nor its protonated Schiff base undergoes deprotonation nor does its tryptophan fluorescence undergo quenching. This result is unlike either the purple species (which absorbs in the blue) or wild-type bacteriorhodopsin expressed in E. coli. As the pH increases, both the color changes and the protonated Schiff base deprotonation efficiency suggest a blue-to-purple transition of the Y185F mutant near pH 9. If this blue-to-purple transition of Y185F corresponds to the blue-to-purple transition of purple-membrane (native) bacteriorhodopsin (occurring at pH 2.6) and of wild-type bacteriorhodopsin expressed in E. coli (occurring at pH 5), the protein-conformation changes of this transition as well as the protonated Schiff base deprotonation may be controlled not by surface pH alone, but rather by the coupling between surface potential and the general protein internal structure around the active site. The results also suggest that Tyr-185 does not deprotonate during the photocycle in purple-membrane bacteriorhodopsin.
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- Ahl P. L., Stern L. J., Düring D., Mogi T., Khorana H. G., Rothschild K. J. Effects of amino acid substitutions in the F helix of bacteriorhodopsin. Low temperature ultraviolet/visible difference spectroscopy. J Biol Chem. 1988 Sep 25;263(27):13594–13601. [PubMed] [Google Scholar]
- Bayley H., Huang K. S., Radhakrishnan R., Ross A. H., Takagaki Y., Khorana H. G. Site of attachment of retinal in bacteriorhodopsin. Proc Natl Acad Sci U S A. 1981 Apr;78(4):2225–2229. doi: 10.1073/pnas.78.4.2225. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bogomolni R. A., Stubbs L., Lanyi J. K. Illumination-dependent changes in the intrinsic fluorescence of bacteriorhodopsin. Biochemistry. 1978 Mar 21;17(6):1037–1041. doi: 10.1021/bi00599a015. [DOI] [PubMed] [Google Scholar]
- Bogomolni R. A., Stubbs L., Lanyi J. K. Illumination-dependent changes in the intrinsic fluorescence of bacteriorhodopsin. Biochemistry. 1978 Mar 21;17(6):1037–1041. doi: 10.1021/bi00599a015. [DOI] [PubMed] [Google Scholar]
- Braiman M. S., Mogi T., Stern L. J., Hackett N. R., Chao B. H., Khorana H. G., Rothschild K. J. Vibrational spectroscopy of bacteriorhodopsin mutants: I. Tyrosine-185 protonates and deprotonates during the photocycle. Proteins. 1988;3(4):219–229. doi: 10.1002/prot.340030403. [DOI] [PubMed] [Google Scholar]
- Braiman M. S., Stern L. J., Chao B. H., Khorana H. G. Structure-function studies on bacteriorhodopsin. IV. Purification and renaturation of bacterio-opsin polypeptide expressed in Escherichia coli. J Biol Chem. 1987 Jul 5;262(19):9271–9276. [PubMed] [Google Scholar]
- Bridgen J., Walker I. D. Photoreceptor protein from the purple membrane of Halobacterium halobium. Molecular weight and retinal binding site. Biochemistry. 1976 Feb 24;15(4):792–798. doi: 10.1021/bi00649a010. [DOI] [PubMed] [Google Scholar]
- Chronister E. L., Corcoran T. C., Song L., El-Sayed M. A. On the molecular mechanisms of the Schiff base deprotonation during the bacteriorhodopsin photocycle. Proc Natl Acad Sci U S A. 1986 Nov;83(22):8580–8584. doi: 10.1073/pnas.83.22.8580. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Corcoran T. C., Ismail K. Z., El-Sayed M. A. Evidence for the involvement of more than one metal cation in the Schiff base deprotonation process during the photocycle of bacteriorhodopsin. Proc Natl Acad Sci U S A. 1987 Jun;84(12):4094–4098. doi: 10.1073/pnas.84.12.4094. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dencher N., Wilms M. Flash photometric experiments on the photochemical cycle of bacteriorhodopsin. Biophys Struct Mech. 1975 May 30;1(3):259–271. doi: 10.1007/BF00535760. [DOI] [PubMed] [Google Scholar]
- Dunn R. J., Hackett N. R., McCoy J. M., Chao B. H., Kimura K., Khorana H. G. Structure-function studies on bacteriorhodopsin. I. Expression of the bacterio-opsin gene in Escherichia coli. J Biol Chem. 1987 Jul 5;262(19):9246–9254. [PubMed] [Google Scholar]
- Fischer U., Oesterhelt D. Chromophore equilibria in bacteriorhodopsin. Biophys J. 1979 Nov;28(2):211–230. doi: 10.1016/S0006-3495(79)85172-3. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fukumoto J. M., Hopewell W. D., Karvaly B., El-Sayed M. A. Time-resolved protein fluorescence studies of intermediates in the photochemical cycle of bacteriorhodopsin. Proc Natl Acad Sci U S A. 1981 Jan;78(1):252–255. doi: 10.1073/pnas.78.1.252. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gilles-Gonzalez M. A., Hackett N. R., Jones S. J., Khorana H. G., Lee D. S., Lo K. M., McCoy J. M. Methods for mutagenesis of the bacterioopsin gene. Methods Enzymol. 1986;125:190–214. doi: 10.1016/s0076-6879(86)25018-1. [DOI] [PubMed] [Google Scholar]
- Hackett N. R., Stern L. J., Chao B. H., Kronis K. A., Khorana H. G. Structure-function studies on bacteriorhodopsin. V. Effects of amino acid substitutions in the putative helix F. J Biol Chem. 1987 Jul 5;262(19):9277–9284. [PubMed] [Google Scholar]
- Hanamoto J. H., Dupuis P., El-Sayed M. A. On the protein (tyrosine)-chromophore (protonated Schiff base) coupling in bacteriorhodopsin. Proc Natl Acad Sci U S A. 1984 Nov;81(22):7083–7087. doi: 10.1073/pnas.81.22.7083. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hess B., Kuschmitz D. Kinetic interaction between aromatic residues and the retinal chromophore of bacteriorhodopsin during the photocycle. FEBS Lett. 1979 Apr 15;100(2):334–340. doi: 10.1016/0014-5793(79)80364-6. [DOI] [PubMed] [Google Scholar]
- Holz M., Drachev L. A., Mogi T., Otto H., Kaulen A. D., Heyn M. P., Skulachev V. P., Khorana H. G. Replacement of aspartic acid-96 by asparagine in bacteriorhodopsin slows both the decay of the M intermediate and the associated proton movement. Proc Natl Acad Sci U S A. 1989 Apr;86(7):2167–2171. doi: 10.1073/pnas.86.7.2167. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jang D. J., el-Sayed M. A. Deprotonation of lipid-depleted bacteriorhodopsin. Proc Natl Acad Sci U S A. 1988 Aug;85(16):5918–5922. doi: 10.1073/pnas.85.16.5918. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jang D. J., el-Sayed M. A. Tryptophan fluorescence quenching as a monitor for the protein conformation changes occurring during the photocycle of bacteriorhodopsin under different perturbations. Proc Natl Acad Sci U S A. 1989 Aug;86(15):5815–5819. doi: 10.1073/pnas.86.15.5815. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kalisky O., Ottolenghi M., Honig B., Korenstein R. Environmental effects on formation and photoreaction of the M412 photoproduct of bacteriorhodopsin: implications for the mechanism of proton pumping. Biochemistry. 1981 Feb 3;20(3):649–655. doi: 10.1021/bi00506a031. [DOI] [PubMed] [Google Scholar]
- Karnik S. S., Nassal M., Doi T., Jay E., Sgaramella V., Khorana H. G. Structure-function studies on bacteriorhodopsin. II. Improved expression of the bacterio-opsin gene in Escherichia coli. J Biol Chem. 1987 Jul 5;262(19):9255–9263. [PubMed] [Google Scholar]
- Khorana H. G. Bacteriorhodopsin, a membrane protein that uses light to translocate protons. J Biol Chem. 1988 Jun 5;263(16):7439–7442. [PubMed] [Google Scholar]
- Khorana H. G., Gerber G. E., Herlihy W. C., Gray C. P., Anderegg R. J., Nihei K., Biemann K. Amino acid sequence of bacteriorhodopsin. Proc Natl Acad Sci U S A. 1979 Oct;76(10):5046–5050. doi: 10.1073/pnas.76.10.5046. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kimura Y., Ikegami A., Stoeckenius W. Salt and pH-dependent changes of the purple membrane absorption spectrum. Photochem Photobiol. 1984 Nov;40(5):641–646. doi: 10.1111/j.1751-1097.1984.tb05353.x. [DOI] [PubMed] [Google Scholar]
- Lind C., Höjeberg B., Khorana H. G. Reconstitution of delipidated bacteriorhodopsin with endogenous polar lipids. J Biol Chem. 1981 Aug 25;256(16):8298–8305. [PubMed] [Google Scholar]
- Lo K. M., Jones S. S., Hackett N. R., Khorana H. G. Specific amino acid substitutions in bacterioopsin: Replacement of a restriction fragment in the structural gene by synthetic DNA fragments containing altered codons. Proc Natl Acad Sci U S A. 1984 Apr;81(8):2285–2289. doi: 10.1073/pnas.81.8.2285. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mathies R. A., Brito Cruz C. H., Pollard W. T., Shank C. V. Direct observation of the femtosecond excited-state cis-trans isomerization in bacteriorhodopsin. Science. 1988 May 6;240(4853):777–779. doi: 10.1126/science.3363359. [DOI] [PubMed] [Google Scholar]
- Merz H., Zundel G. Proton conduction in bacteriorhodopsin via a hydrogen-bonded chain with large proton polarizability. Biochem Biophys Res Commun. 1981 Jul 30;101(2):540–546. doi: 10.1016/0006-291x(81)91293-6. [DOI] [PubMed] [Google Scholar]
- Mogi T., Stern L. J., Hackett N. R., Khorana H. G. Bacteriorhodopsin mutants containing single tyrosine to phenylalanine substitutions are all active in proton translocation. Proc Natl Acad Sci U S A. 1987 Aug;84(16):5595–5599. doi: 10.1073/pnas.84.16.5595. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mogi T., Stern L. J., Marti T., Chao B. H., Khorana H. G. Aspartic acid substitutions affect proton translocation by bacteriorhodopsin. Proc Natl Acad Sci U S A. 1988 Jun;85(12):4148–4152. doi: 10.1073/pnas.85.12.4148. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Moore T. A., Edgerton M. E., Parr G., Greenwood C., Perham R. N. Studies of an acid-induced species of purple membrane from Halobacterium halobium. Biochem J. 1978 May 1;171(2):469–476. doi: 10.1042/bj1710469. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mowery P. C., Lozier R. H., Chae Q., Tseng Y. W., Taylor M., Stoeckenius W. Effect of acid pH on the absorption spectra and photoreactions of bacteriorhodopsin. Biochemistry. 1979 Sep 18;18(19):4100–4107. doi: 10.1021/bi00586a007. [DOI] [PubMed] [Google Scholar]
- Muccio D. D., Cassim J. Y. Interpretations of the effects of pH on the spectra of purple membrane. J Mol Biol. 1979 Dec 15;135(3):595–609. doi: 10.1016/0022-2836(79)90166-9. [DOI] [PubMed] [Google Scholar]
- Nagle J. F., Morowitz H. J. Molecular mechanisms for proton transport in membranes. Proc Natl Acad Sci U S A. 1978 Jan;75(1):298–302. doi: 10.1073/pnas.75.1.298. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nassal M., Mogi T., Karnik S. S., Khorana H. G. Structure-function studies on bacteriorhodopsin. III. Total synthesis of a gene for bacterio-opsin and its expression in Escherichia coli. J Biol Chem. 1987 Jul 5;262(19):9264–9270. [PubMed] [Google Scholar]
- Oesterhelt D., Stoeckenius W. Rhodopsin-like protein from the purple membrane of Halobacterium halobium. Nat New Biol. 1971 Sep 29;233(39):149–152. doi: 10.1038/newbio233149a0. [DOI] [PubMed] [Google Scholar]
- Popot J. L., Gerchman S. E., Engelman D. M. Refolding of bacteriorhodopsin in lipid bilayers. A thermodynamically controlled two-stage process. J Mol Biol. 1987 Dec 20;198(4):655–676. doi: 10.1016/0022-2836(87)90208-7. [DOI] [PubMed] [Google Scholar]
- Rothschild K. J., Roepe P., Ahl P. L., Earnest T. N., Bogomolni R. A., Das Gupta S. K., Mulliken C. M., Herzfeld J. Evidence for a tyrosine protonation change during the primary phototransition of bacteriorhodopsin at low temperature. Proc Natl Acad Sci U S A. 1986 Jan;83(2):347–351. doi: 10.1073/pnas.83.2.347. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Stoeckenius W., Bogomolni R. A. Bacteriorhodopsin and related pigments of halobacteria. Annu Rev Biochem. 1982;51:587–616. doi: 10.1146/annurev.bi.51.070182.003103. [DOI] [PubMed] [Google Scholar]
- Stoeckenius W., Lozier R. H., Bogomolni R. A. Bacteriorhodopsin and the purple membrane of halobacteria. Biochim Biophys Acta. 1979 Mar 14;505(3-4):215–278. doi: 10.1016/0304-4173(79)90006-5. [DOI] [PubMed] [Google Scholar]
- Szundi I., Stoeckenius W. Effect of lipid surface charges on the purple-to-blue transition of bacteriorhodopsin. Proc Natl Acad Sci U S A. 1987 Jun;84(11):3681–3684. doi: 10.1073/pnas.84.11.3681. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Szundi I., Stoeckenius W. Purple-to-blue transition of bacteriorhodopsin in a neutral lipid environment. Biophys J. 1988 Aug;54(2):227–232. doi: 10.1016/S0006-3495(88)82951-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Szundi I., Stoeckenius W. Surface pH controls purple-to-blue transition of bacteriorhodopsin. A theoretical model of purple membrane surface. Biophys J. 1989 Aug;56(2):369–383. doi: 10.1016/S0006-3495(89)82683-9. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Warshel A., Russell S. T. Calculations of electrostatic interactions in biological systems and in solutions. Q Rev Biophys. 1984 Aug;17(3):283–422. doi: 10.1017/s0033583500005333. [DOI] [PubMed] [Google Scholar]