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. 2017 Apr 24;5(8):e13209. doi: 10.14814/phy2.13209

Light‐dependent expression of a Na+/H+ exchanger 3‐like transporter in the ctenidium of the giant clam, Tridacna squamosa, can be related to increased H+ excretion during light‐enhanced calcification

Kum C Hiong 1, Anh H Cao‐Pham 1, Celine Y L Choo 1, Mel V Boo 1, Wai P Wong 1, Shit F Chew 3, Yuen K Ip 1,2,✉
PMCID: PMC5408280  PMID: 28438983

Abstract

Na+/H+ exchangers (NHEs) regulate intracellular pH and ionic balance by mediating H+ efflux in exchange for Na+ uptake in a 1:1 stoichiometry. This study aimed to obtain from the ctenidium of the giant clam Tridacna squamosa (TS) the complete cDNA sequence of a NHE3‐like transporter (TSNHE3), and to determine the effect of light exposure on its mRNA expression level and protein abundance therein. The coding sequence of TSNHE3 comprised 2886 bp, encoding 961 amino acids with an estimated molecular mass of 105.7 kDa. Immunofluorescence microscopy revealed that TSNHE3 was localized to the apical membrane of epithelial cells of the ctenidial filaments and the tertiary water channels. Particularly, the apical immunofluorescence of the ctenidial filaments was consistently stronger in the ctenidium of clams exposed to 12 h of light than those of the control kept in darkness. Indeed, light induced significant increases in the transcript level and protein abundance of TSNHE3/TSNHE3 in the ctenidium, indicating that the transcription and translation of TSNHE3/TSNHE3 were light‐dependent. As light‐enhanced calcification generates H+, the increased expression of TSNHE3/TSNHE3 in the ctenidium could be a response to augment H+ excretion in pursuance of whole‐body acid‐base balance during light exposure. These results signify that shell formation in giant clams requires the collaboration between the ctenidium, which is a respiratory and iono‐regulatory organ, and the inner mantle, which is directly involved in the calcification process, and provide new insights into the mechanisms of light‐enhanced calcification in giant clams.

Keywords: Acid‐base balance, ammonia, mantle, proton, tridacnid, zooxanthellae

Introduction

Giant clams (Family: Cardiidae, Subfamily: Tridacninae, Genus: Tridacna) are marine bivalve mollusks which can be found along coral reefs throughout the tropical Indo‐Pacific (Rosewater 1965). They harbor symbiotic zooxanthellae (Symbiodinium; Clade A, C and D) which reside extracellularly in a branched tubular system within their body. The tubular system originates from the stomach and splits into small secondary and tertiary tubes dorsally into the root of the siphonal mantle. The tertiary tubes are positioned under the surface of the extensible outer mantle (Norton et al. 1992), where the zooxanthellae can receive sufficient light for photosynthesis (Fig. 1). The outer mantle has iridophores which consist of small groups of cells (iridocytes) containing stacks of tiny flattened platelets (Griffiths et al. 1992). The reflective platelets scatter light of photosynthetically productive wavelengths into the tissue while back‐reflecting nonproductive wavelengths (Holt et al. 2014). Thus, the extensible outer mantle is brightly colored (Fig. 1). In contrast, the inner mantle adjacent to the extrapallial fluid within the pallial line is mostly nonpigmented (Fig. 1) and involved in shell formation (calcification). With the help of symbiotic zooxanthellae, giant clams can undergo light‐enhanced shell formation and maintain high growth rates in nutrient‐deficient marine environments (Lucas et al. 1989).

Figure 1.

Figure 1

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An illustration on the anatomy of the giant clam Tridacna squamosa. The ctenidium is a respiratory organ that takes part in ionoregulation and acid‐base balance. The extensible outer mantle harbors extracellular zooxanthellae in tertiary tubules and the inner mantle is in direct contact with the extrapallial fluid and it is involved in shell formation.

Shell formation in bivalves involves calcification, whereby calcium carbonate is deposited onto the inside surface of the shell‐valve according to the reaction: Ca2+ + HCO3 − ⇔ CaCO3 + H+. The removal of H+ leads to an increase in pH which would raise the supersaturation of aragonite and result in a more rapid precipitation of CaCO3. Indeed, exposure to light induces a significant increase in the pH of, and a significant decrease in the total ammonia concentration in, the extrapallial fluid of the fluted giant clam, Tridacna squamosa (Ip et al. 2006). Ip et al. (2006, 2015) proposed that, during light‐enhanced calcification, H+ released from CaCO3 deposition could react with NH3 to form NH4 + in the extrapallial fluid, and NH4 + could be transported subsequently into the shell‐facing epithelial cells of the inner mantle. There is also indirect evidence which suggests the involvement of a Ca2+‐ATPase in light‐enhanced calcification in Tridacna derasa (Sano et al. 2012). It is probable that this is a plasma membrane Ca2+‐ATPase which can act as an obligatory Ca2+/H+ exchanger (Salvador et al. 1988), transporting Ca2+ from the inner mantle epithelial cells to the extrapallial fluid and H+ in the opposite direction. Either way, the excess H+ entered into the shell‐facing mantle epithelial cells needs to be transported to the hemolymph and excreted elsewhere, so as to maintain cellular and whole‐body acid‐base balance. One possible site of H+ excretion and whole‐body acid‐base balance is the ctenidium (or gill) which, despite being far away from the site of calcification, has a large surface area for respiration and ion transport (Fig. 1).

A ctenidium is a respiratory organ which is found inside the mantle cavity of many mollusks, including bivalves, cephalopods and numerous aquatic gastropods. It is white in color and consists of two demibranches (dorsal and ventral). There is one pair of demibranches on each side of the byssal digestive mass and reproductive organ. Each ctenidium is shaped like a comb, with a central part from which many filaments protrude and line up in a row to increase the surface area for respiration. A ctenidium can also take part in ionoregulation and acid‐base balance in mollusks. In cephalopods, enzymes and transporters related to acid‐base balance, including carbonic anhydrase, Na+/K+‐ATPase, V‐type H+‐ATPase, Na+:HCO3 − cotransporter and Na+/H+ exchanger (NHE), are expressed in specialized ion‐transporting cells in the ctenidium, which can be the major site for acid‐base regulation (Hu et al. 2011, 2014).

NHEs belonging to the solute‐carrier 9 family are transmembrane proteins that regulate intracellular pH and ionic balance by mediating Na+/H+ exchange in a 1:1 stoichiometry (Fliegel and Dibrov 1996; Counillon and Pouyssegur 2000). There are 9 isoforms of NHE (NHE1–9), each with distinct tissue expression, cellular localization, and physiological functions in mammals (see Donowitz and Tse 2001 for a review). Based on their subcellular localization, NHE1–5 is classified as plasma membrane proteins. NHE6–9 is present in intracellular membranes of organelles such as the Golgi apparatus, although NHE8 is also expressed in the apical membrane of polarized epithelial cells. Mammalian NHE1 plays a key role in regulation of cell pH, volume, and proliferation, and has basolateral localization in epithelial cells. NHE2 and NHE3 mediate Na+ absorption and H+ secretion, and are localized to the apical membrane of renal cells. About 50% of the overall apical NHE activity is mediated by NHE3 in the proximal convoluted tubule of mice (Choi et al. 2000). Similar to mammalian kidneys, fish gills are the main excretory organs responsible for iono‐regulation and acid‐base balance. Branchial Nhe isoforms can contribute to H+ secretion in marine teleosts (Claiborne et al. 1999; Edwards et al. 2005) and Na+ absorption in some freshwater species (Hwang and Lee 2007).

At present, there is a dearth of information on the role of the ctenidium in acid‐base balance in bivalves in general, and on the role of the ctenidium in light‐enhanced calcification in giant clams. We speculated that the ctenidium of T. squamosa would express an NHE transporter to mediate H+ excretion and acid‐base balance. Furthermore, we postulated that such a transporter would be expressed in the apical membrane and hence would be NHE3‐like. Therefore, this study was undertaken to obtain from the ctenidium of T. squamosa (TS) the complete cDNA sequence of an NHE3‐like transporter (TSNHE3), and to determine the effects of 3 h, 6 h or 12 h of light exposure on its mRNA expression level therein. Based on the deduced TSNHE3 sequence, a custom‐made anti‐TSNHE3 antibody was made to examine the effects of light exposure on its protein abundance in the ctenidium. Immunofluorescence microscopy was also performed to confirm the apical localization of TSNHE3 in the epithelial cells of ctenidial filaments and tertiary water channels. As TSNHE3/TSNHE3 could be involved in the excretion of excess H+ produced in the extrapallial fluid during light‐enhanced calcification, the hypothesis tested was that the gene and protein expression levels in the ctenidium of T. squamosa would be light‐dependent.

Materials and Methods

Experimental animals

Adult specimens of T. squamosa (521 ± 184 g; N = 30) were obtained from Xanh Tuoi Tropical Fish., Ltd (Vietnam), and kept in an indoor aquarium. They were maintained in 350 L of recirculating seawater in a glass tank (L90 cm x W62 cm x H60 cm) under a 12 h light:12 h dark regime, with water conditions and light intensity as described previously (Ip et al. 2015), and acclimatized to laboratory conditions for at least 1 month before experiments. All applicable international, national, and/or institutional (National University of Singapore) guidelines for the care and use of animals were followed.

Experimental conditions

A batch of T. squamosa (N = 5; control) was sampled at the end of the 12 h dark period of the 12 h light:12 h dark regime. Three batches of T. squamosa (N = 5 each) were sampled 3, 6, or 12 h after exposure to light. For tissue sampling, giant clams were forced open, and the abductor muscles were cut. The entire right and left ctenidium were dissected out, blotted dry and immediately freeze‐clamped with liquid‐nitrogen‐precooled aluminum tongs. All samples were stored at −80°C until analyzed. Tissues for immunofluorescence microscopy were sampled from T. squamosa which had been exposed to darkness (control) or light for 12 h (N = 5 each) followed with anesthetization in 0.2% phenoxyethanol.

mRNA extraction and cDNA synthesis

The total RNA was extracted from the ctenidium sample using TRI Reagent® (Sigma‐Aldrich Co., St. Louis, MO), and the extracted total RNA was further purified using the RNeasy Plus Mini Kit (Qiagen GmbH, Hilden, Germany). The purified total RNA was quantified using a Shimadzu BioSpec‐nano spectrophotometer (Shimadzu Corporation, Tokyo, Japan) and checked electrophoretically to verify the RNA integrity. The purified total RNA (4 μg) was reverse transcribed into cDNA using a RevertAid™ first‐strand cDNA synthesis kit (Thermo Fisher Scientific Inc., Waltham, MA).

PCR, RACE PCR, and sequencing

The partial TSNHE3 sequence was obtained using primers (Forward: 5′‐GCVAAATAGGYTTYCATC‐3′ and Reverse: 5′‐CTGYACAAAGACWGTGAAG‐3′) designed according to the conserved regions of Aplysia californica NHE 3‐like (XM_005100984.2), Lingula anatina NHE3‐like (XM_013560580.1) and Patiria pectinifera NHE3 (EF514911.1). PCR was carried out in a 9902 Veriti 96‐well thermal cycler (Applied Biosystems, Carlsbad, CA) using DreamTaq™ polymerase (Thermo Fisher Scientific Inc.). The cycling conditions were 94°C (3 min), followed by 35 cycles of 94°C (30 sec), 50°C (30 sec), 72°C (2 min) and 1 cycle of final extension at 72°C (10 min). PCR products were separated by electrophoresis in 1% agarose gel. Bands of the estimated size were extracted from the gels using FavorPrep Gel Purification Mini Kit (Favorgen Biotech Corp., Ping‐Tung, Taiwan) according to manufacturer's protocol. PCR products were cloned into pGEM®‐T Easy vector (Promega Corporation). The ligated vector was transformed into JM109 competent cells and plated onto Luria‐Bertani (LB) agar with ampicillin, X‐gal and IPTG. Selected white colonies were grown overnight in LB with ampicillin. The plasmids were extracted using the resin‐based plasmid miniprep kit (Axygen Biosciences, Union city, CA). Multiple clones of each fragment were sequenced bidirectionally. The fragments were verified to be NHE3‐like transporter from Genbank database. Analysis of multiple clones of TSNHE3 fragment did not reveal the presence of subisoforms. Specific primers (Forward: 5′‐CAGTTTATCATGGCGTTCGGTGGACTTC‐3′ and Reverse: 5′‐CTCTGAAGTGGTTGCGACATGCGTG‐3′) were designed to obtain the complete cDNA sequence using 5′ and 3′ RACE (SMARTer™ RACE cDNA amplification kit: Clontech Laboratories, Mountain View, CA). Multiple sequencing was performed in both directions using BigDye® Terminator v3.1 Cycle Sequencing Kit (Thermo Fisher Scientific Inc.) and subsequently purified by ethanol/sodium acetate precipitation. Purified products were automatically sequenced using the 3130XL Genetic Analyzer (Thermo Fisher Scientific Inc.) to obtain the full‐length cDNA. Sequence assembly and analysis were performed using BioEdit version 7.2.5. The cDNA sequence of TSNHE3 was deposited into GenBank with the accession number KX685672.

Deduced amino acid sequence and phylogenetic analysis

The TSNHE3 amino acid sequence was translated from the nucleotide sequence of TSNHE3 using ExPASy Proteomic server (http://web.expasy.org/translate/). The identity of the deduced amino acid sequence of TSNHE3 was checked by a Blast protein–protein tool (BlastP; http://www.ncbi.nlm.nih.gov/BLAST) with the nonredundant protein database at the National Center for Biotechnology Information (NCBI). The transmembrane domains were predicted using the TMpred program (http://www.ch.embnet.org/software/TMPRED_form.html).

Amino acid sequences of NHE or NHE‐like isoforms from other animals were obtained from Genbank or UniProtKB/TrEMBL (Supporting information Table S1). The sequences were aligned using ClustalX2 and phenogramic analysis was performed to confirm the identity of TSNHE3 using neighbor‐joining method and 100 bootstrap replicates with Phylip.

Antibodies

The anti‐TSNHE3 antibody was raised as a rabbit polyclonal antibody against residues 573‐586 (LIARSRSPRIDEDE) of TSNHE3 by a commercial firm (GenScript, Piscataway, NJ, USA). The anti‐α‐tubulin antibody (12G10) was obtained from the Developmental Studies Hybridoma Bank maintained by the University of Iowa, Department of Biological Sciences, Iowa City, IA 52242.

Immunofluorescence microscopy

Samples of the ctenidium were excised and immersion fixed overnight in 3% paraformaldehyde in seawater at 4°C. Samples were dehydrated in ethanol and cleared in Histoclear (Sigma‐Aldrich Co.) before embedding in paraffin. The paraffin‐embedded samples were sectioned (3 μm) and collected on slides. Antigen retrieval was performed by treating deparaffinized sections with 1% SDS for 10 min. Sections were blocked using Fast Blocker (Thermo Fisher Scientific Inc.) for 10 min, and subsequently labeled using the custom‐made anti‐TSNHE3 antibody (Genscript). The primary antibody was diluted 1:400 in blocking buffer and incubated at 37°C for 1 h. The secondary antibody incubation was performed at 37°C for 1 h using goat anti‐rabbit Alexa Fluor 488 (1:800 dilution; Life Technologies Corporation). The sections were then rinsed three times with TPBS (0.05% Tween 20 in Phosphate‐buffered saline: 10 mmol L−1 Na2HPO4, 1.8 mmol L−1 KH2PO4, 137 mmol L−1 NaCl, 2.7 mmol L−1 KCl, pH 7.4), counterstained with DAPI nuclear stain and mounted in ProLong Gold Antifade Mountant (Life Technologies Corporation). A peptide competition assay was performed to validate the specificity of the anti‐TSNHE3 antibody. The anti‐TSNHE3 antibody (25 μg) was incubated with the immunizing peptide (125 μg) provided by GenScript (Piscataway, NJ) in a total volume of 200 μL for 1 h at 25°C. The resulting medium containing the antibody was diluted in Pierce Fast Blocking Buffer and used for immuno‐staining.

An Olympus BX60 epifluorescence microscope (Olympus Corporation, Tokyo, Japan) was used for viewing the sections, and images were captured using the Olympus DP73 digital camera (Olympus Corporation). Optimal exposure settings were predetermined and all images captured under these settings. The corresponding differential interference contrast (DIC) image was also captured for tissue orientation.

Quantifications of total fluorescence intensities were performed on original images captured at 400 ×  magnification for both ctenidial filaments and tertiary water channels of giant clams kept in darkness (control) or exposed to light for 12 h, using Image J version 1.50i software with an Olympus Viewer Plugin (http://rsbweb.nih.gov.libproxy1.nus.edu.sg/ij/). Images were converted to grayscale. A total of five ctenidial filaments and five tertiary water channels were randomly chosen from each image for measurement. For each filament or water channel, six different regions (the summation of which represented at least 50% of the total area) were randomly chosen for measurement. Regions of similar areas adjacent to the apical membrane with little fluorescence were selected for background subtraction. The area, integrated density and mean grey value were used to calculate the total fluorescent intensities in both dark and light samples based on the method of Potapova et al. (2011). Results represent the total fluorescence of five ctenidial filaments or water channels for each individual image. A total of 10 individual images were quantified (N = 5 for control kept in darkness, N = 5 for clams exposed to 12 h of light).

Quantitative real‐time PCR

RNA (4 μg) from the ctenidia of T. squamosa were extracted as mentioned above and reverse‐transcribed using random hexamer primers with RevertAidTM first strand cDNA synthesis kit. qPCR was performed in triplicates using a StepOnePlusTM Real‐Time PCR System (Applied Biosystems). The mRNA expression level of TSNHE3 was determined using specific forward (5′‐CATAGAGCACAACCTGTCCA ‐3′) and reverse (5′‐ATGTTCCAATCCAGAGTGTCC‐3′) qPCR primers. The qPCR reactions contained 5 μL of 2× Fast SYBR® Green Master Mix (Applied Biosystems), 0.3 μmol L−1 of forward and reverse primers each and various quantities of standard (to construct the standard curve) or 1 ng of sample cDNA in a total volume of 10 μL. The cycling conditions, melt curve analysis and construction of a standard curve were performed according to the method of Hiong et al. (2017). The amplification efficiency for TSNHE3 was 96.3%. The quantity of TSNHE3 transcripts in a sample was determined from the linear regression line derived from the standard curve and expressed as copy number per ng of total RNA.

SDS‐PAGE electrophoresis and Western blotting

The tissue samples were homogenized two times in five volumes (w/v) of ice cold buffer containing 50 mmol L−1 Tris HCl, (pH 7.4), 1 mmol L−1 EDTA, 150 mmol L−1 NaCl, 1 mmol L−1 NaF, 1 mmol L−1 Na3VO4, 1% NP‐40, 1% sodium deoxycholate, 1 mmol L−1 PMSF, and 1× HALT™ protease inhibitor cocktail (Thermo Fisher Scientific Inc.) at 50 Hz for 3 min each with 10 sec intervals using the TissueLyser LT (Qiagen GmbH). The homogenate was centrifuged at 10,000g for 20 min at 4°C. The protein concentration in the supernatant obtained was determined according to the method of Bradford (1976) and adjusted to 2.5 μg μL−1 with Laemmli buffer (Laemmli 1970). Samples were heated at 70°C for 15 min, and then kept at −80°C until analysis.

Fifty micrograms of protein were separated by SDS‐PAGE (8% acrylamide for resolving gel, 4% acrylamide for stacking gel) under conditions as described by Laemmli (1970) using a vertical mini‐slab apparatus (Bio‐Rad Laboratories, Hercules, CA). Proteins were then electrophoretically transferred onto PVDF membranes using a transfer apparatus (Bio‐Rad Laboratories). After transfer, Western blotting was performed using the Pierce Fast Western Blot kit, SuperSignal® West Pico Substrate (Thermo Fisher Scientific Inc.) according to the manufacturer's instructions with slight modifications. Briefly, membranes were incubated with anti‐TSNHE3 antibody (1.25 μg mL−1) or anti‐α‐tubulin antibody (0.05 μg mL−1) for 1 h at 25°C and then incubated in optimized concentrations of anti‐rabbit or anti‐mouse horseradish peroxidase‐conjugated secondary antibodies for 10 min at 25°C. The membranes were washed six times with the Fast Western Wash Buffer provided in the kit in order to have a clear background. Immunoreactive band of TSNHE3 was visualized at the molecular mass of ~80 kDa. Bands were visualized by chemiluminescence provided in the Fast Western Blot kit (Thermo Fisher Scientific Inc.) using X‐ray films (CL‐XPosureTM film, Thermo Fisher Scientific Inc.) which were processed by a Kodak X‐Omat 3000 RA processor (Kodak, Rochester, NY). The developed films were scanned using a CanonScan 9000F Mark II flatbed scanner in TIFF format at 300 dpi resolution. Densitometric quantification of band intensities were performed using ImageJ (version 1.50i, NIH), calibrated with a 37‐step reflection scanner scale (1″ × 8″; Stouffer #R3705‐1C). Results were presented as relative protein abundance of TSNHE3 normalized with α‐tubulin.

Statistical analysis

Results are presented as means ± standard errors of means (SEM.). Statistical analyses were performed using SPSS version 21 (IBM Corporation, Armonk, NY). Homogeneity of variance was checked using Levene's Test. Differences between means were evaluated by one‐way analysis of variance (ANOVA) followed by multiple comparisons of means by Dunnett's T3 (for unequal variance) or by Tukey's test (for equal variance). Differences were regarded as statistically significant at P < 0.05.

Results

Nucleotide sequences, translated amino acid sequences and phylogenetic analysis

The complete coding sequence of TSNHE3 from the ctenidium of T. squamosa comprised 2886 bp, encoding 961 amino acids with an estimated molecular mass of 105.7 kDa. The top ten results of BlastP using the deduced TSNHE3 of T. squamosa as the query revealed that it was similar to the NHE3‐like isoforms of A. californica and L. anatina (Table 1). The deduced TSNHE3 sequence had 12 predicted transmembrane regions (TM1‐TM12; Fig. 2). Indeed, a phenogramic analysis confirmed that TSNHE3 of T. squamosa was closely related to NHE3 or NHE3‐like transporter of other mollusks and nematodes, distinct from other NHE or NHE‐like isoforms (Fig. 3).

Table 1.

The top 10 results from a protein BLAST (BlastP program, version 2.6.0) of the deduced amino acid sequence of Na+/H+ exchanger 3‐like transporter from the ctenidia of Tridacna squamosa using default settings

No Description Accession number E‐value Max score (bits) Total Score Query cover (%) Identity (%)
1 PREDICTED: probable Na(+)/H(+) antiporter nhx‐9 [Crassostrea gigas] XP_011424858.1 0 866 866 96 49
2 PREDICTED: sodium/hydrogen exchanger 3‐like isoform X1 [Aplysia californica] XP_005101041.1 0 688 790 89 52
3 PREDICTED: sodium/hydrogen exchanger 3‐like isoform X2 [Aplysia californica] XP_005101042.1 0 649 751 83 53
4 PREDICTED: sodium/hydrogen exchanger 3‐like isoform X3 [Aplysia californica] XP_005101043.1 0 647 749 84 52
5 PREDICTED: sodium/hydrogen exchanger 3‐like isoform X3 [Lingula anatina] XP_013416034.1 0 608 608 74 41
6 PREDICTED: sodium/hydrogen exchanger 3‐like isoform X2 [Lingula anatina] XP_013416033.1 0 607 651 65 54
7 PREDICTED: sodium/hydrogen exchanger 3‐like isoform X1 [Lingula anatina] XP_013416032.1 0 607 650 62 54
8 Sodium/hydrogen exchanger NHE1 [Helix aspersa] AAT35815.1 0 602 723 74 60
9 Na+/H+ exchanger [Portunus trituberculatus] ANV19765.1 0 599 599 53 54
10 PREDICTED: uncharacterized protein LOC106615301 isoform X7 [Bactrocera oleae] XP_014086946.1 0 597 599 53 54
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Figure 2.

Figure 2

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A molecular characterization of Na+/H+ exchanger 3‐like transporter from the ctenidium of Tridacna squamosa (TSNHE3). A multiple amino acid alignment of TSNHE3 from the ctenidium of T. squamosa, with four other known NHE or NHE3‐like transporter from Aplysia californica (XP_005101041.1), Trichinella spiralis (KRY29938.1), Homo sapiens NHE1 (NP_003038.2) and H. sapiens NHE3 (NP_004165.2). Identical or strongly similar amino acids are indicated by shaded residues. Vertical boxes and asterisks represent important amino acid residues that are involved in Na+ and H+ binding, respectively. The arrows denote the highly conserved amino acid residues that are important for intracellular pH sensing. The hash marks represent the amino acid residues that are important in determining sensitivity or resistance to amiloride in NHE. The 12 predicted transmembrane regions (TM1‐TM12) and calcineurin homologous protein (CHP) binding domain are underlined and double underlined, respectively. The transmembrane domains of TSNHE3 were predicted using the TMpred program (http://www.ch.embnet.org/software/TMPRED_form.html).

Figure 3.

Figure 3

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Phenogramic analysis of the Na+/H+ exchanger 3‐like transporter from the ctenidium of Tridacna squamosa (TSNHE3). Numbers presented at each branch point represent bootstrap values from 100 replicates. NHE1 from Clonorchis sinensis is used as the outgroup for the phenogramic analysis.

Immunofluorescence microscopy

There are two nonpigmented ctenidia in T. squamosa, one on each side of the digestive and reproductive mass. Each ctenidium consists of one dorsal (or lateral) and one ventral (or medial) demibranches (Norton and Jones 1992). TSNHE3‐immunostaining was detected at the apical membrane of epithelial cells along the ctenidial branchial filaments of both dorsal and ventral demibranches and around the tertiary water channels of T. squamosa (Fig. 4A, C). The validity of TSNHE3‐immunolabeling was verified through a blocking peptide competition test (Fig. 4B, D). Twelve hours of illumination apparently led to an increase in the immunofluorescent TSNHE3‐staining along the apical membrane of the filamentous epithelial cells (Fig. 5B, D) as compared to the control kept in darkness for 12 h (Fig. 5F, H). Indeed, a quantification (integrated density) of immunofluorescence of the apical lining of the filamentous epithelial cells using ImageJ confirmed that the TSNHE3‐immunostaining of the former (2762 ± 185; N = 5) was significantly greater (P < 0.05; ~2‐fold) than that of the latter (1342 ± 448; N = 5). In contrast, the TSNHE3‐immunostaining of the apical membranes of the epithelial cells surrounding the tertiary water channels in the dorsal and ventral demibranches of clams exposed to light (Fig. 6B, D) or kept in darkness (Fig. 6F, H) were comparable. Some nuclei in the dorsal and ventral demibranches of T. squamosa were immunoreactive to the custom‐made anti‐TSNHE3 antibody (Fig. 5, 6).

Figure 4.

Figure 4

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Validation of immunostaining of the Na+/H+ exchanger 3‐like transporter of Tridacna squamosa (TSNHE3) in the ctenidium using a custom‐made anti‐TSNHE3 antibody through a peptide competition assay (PCA). Immunofluorescent localization of TSNHE3 in the ctenidial filaments (CFs) and tertiary water channels (WCs) of a ctenidium of T. squamosa exposed to 12 h of light using an anti‐TSNHE3 antibody (A, C), or the same anti‐TSNHE3 antibody pre‐incubated with the immunizing peptide in PCA (B, D). The anti‐TSNHE3 immunofluorescence is shown in green, overlaid with differential interference contrast images. Arrowheads in (A) show TSNHE3‐immunostaining of the apical membrane (close arrowhead) of the epithelial cells in a CF as compared to the lack of TSNHE3 immunostaining with PCA in (B). Arrowheads in (C) show TSNHE3‐immunostaining of the apical membrane (close arrowhead) of the epithelial cells lining a WC as compared to the lack of TSNHE3 immunostaining with PCA in (D). HL, hemolymph. Magnification: 200 ×  for (A, B); 400 ×  for (C, D).

Figure 5.

Figure 5

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Immunofluorescent localization of the Na+/H+ exchanger 3‐like transporter of Tridacna squamosa (TSNHE3) in the ctenidial filaments (CFs) of the ctenidium. Immunofluorescent localization of TSNHE3 in the CFs of T. squamosa exposed to 12 h of light (A–D) or 12 h of darkness (control; E–H). Differential interference contrast images show the structure of CFs (A, E). Anti‐TSNHE3 immunofluorescence is shown in green (B, F) with nuclei counterstained with DAPI in blue (C, G). Green and blue channels are merged and overlaid with the respective differential interference contrast image (D, H). Arrowheads denote TSNHE3‐immunostaining of the apical membrane (close arrowhead) and nucleus (open arrowhead) of the epithelial cells of a CF. Magnification: 200 ×  for (A‐H) with insets of D and H at 400 × . Reproducible results were obtained from five individual clams for each experimental condition.

Figure 6.

Figure 6

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Immunofluorescence localization of the Na+/H+ exchanger 3‐like transporter of Tridacna squamosa (TSNHE3) in the tertiary water channels (WCs) of the ctenidium. Immunofluorescent localization of TSNHE3 in the WCs of the ctenidium of T. squamosa exposed to 12 h of light (A–D) or 12 h of darkness (E–H). Differential interference contrast images show the structure and organization of WCs (A, E). Anti‐TSNHE3 immunofluorescence is shown in green (B, F) with nuclei counterstained with DAPI in blue (C, G). Green and blue channels are merged and overlaid with the respective differential interference contrast image (D, H). Arrowheads denote TSNHE3‐immunostaining of the apical membrane (close arrowhead) and nucleus (open arrowhead) of the epithelial cells lining a WC. HL, hemolymph. Magnification: 400 ×  for (A–H) with insets of (D) and (H) at 600 × . Reproducible results were obtained from five individual clams for each experimental condition.

mRNA expression level and protein abundance

There was a significant increase (P < 0.05) in the mRNA expression level of TSNHE3 in the ctenidium of T. squamosa exposed to light for 3 or 6 h (Fig. 7). Western blotting revealed a band of ~80 kDa which was slightly lower than the deduced molecular mass of TSNHE3 (105.7 kDa). Exposure to light for 12 h resulted in a significant increase (P < 0.05) in the protein abundance of ctenidial TSNHE3 (Fig. 8).

Figure 7.

Figure 7

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Effects of light on the mRNA expression levels of the Na + /H + exchanger 3‐like transporter of Tridacna squamosa (TSNHE3) in the ctenidium. Absolute quantification (x 102 copies of transcripts per ng of total RNA) of TSNHE3 transcripts in the ctenidium of T. squamosa exposed to 12 h of darkness (control) or 3, 6 or 12 h of light. Results represent means ± SEM (N = 4). Means not sharing the same letter are significantly different (P < 0.05).

Figure 8.

Figure 8

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Effects of light on the protein abundances of the Na+/H+ exchanger 3‐like transporter of Tridacna squamosa (TSNHE3) in the ctenidium. Protein abundances of TSNHE3 in the ctenidium of T. squamosa exposed to 12 h of darkness (control) or 3, 6 or 12 h of light. (A) An example of immunoblot of TSNHE3 with tubulin as a reference protein. (B) The intensity of the TSNHE3 band for 50 μg protein was normalized with respect to that of tubulin. Results represent means ± SEM (N = 4). Means not sharing the same letter are significantly different (P < 0.05).

Discussion

NHE, acid‐base balance, and calcification in bivalves

NHEs are transporters found in virtually all animal species. Being expressed mainly in the plasma membrane, they function primarily to prevent intracellular acidification by catalyzing the electroneutral removal of one intracellular H+ in exchange for one extracellular Na+ (Orlowski et al. 1992). In particular, NHE3 is expressed in the kidney and gastrointestinal tract of mammals, where it mediates the transepithelial absorption of NaCl and/or NaHCO3 (Orlowski et al. 1992; Counillon and Pouyssegur 2000; Donowitz et al. 2013). In kidney, the regulation of NHE3 activity is essential to the maintenance of Na+ homeostasis, extracellular fluid volume, blood pressure and acid‐base balance.

Freshwater bivalves are hyperosmotic to the external medium. They have to actively absorb ions through epithelial transporters in order to maintain the high osmolality of the extracellular fluid. In freshwater bivalves, both Na+ and Cl− uptake occur through the ctenidium (Dietz and Findley 1980; Dietz and Hagar 1990). Transport kinetic studies involving specific inhibitors indicate the presence of NHE and Cl−/HCO3 − exchanger in ctenidia of freshwater bivalves (Dietz 1978; Dietz and Branton 1979). Intertidal bivalves frequently experience acidosis during air exposure at low tide (Booth et al. 1984; Lindinger et al. 1984), and they have the ability to extrude H+ in exchange for Na+ uptake through ctenidial NHE during acidosis (Byrne and Dietz 1997). In contrast, marine bivalves are osmoconformers, and there is no evidence of NHE being expressed in their ctenidia. Booth et al. (1984) reported that the marine bivalve, Mytilus edulis, had a limited ability to regulate blood pH, and concluded that it did not have to maintain the blood pH in a narrow range due to the lack of pH‐dependent respiratory pigments. However, as shell formation results in the release of H+, bivalves, including marine species, must have mechanisms to excrete the excess H+ produced during calcification in order to prevent acidosis (Wilbur 1983). Such mechanisms are especially important to giant clams which undergo light‐enhanced calcification leading to high rates of H+ production every day during insolation. Here, we report for the first time the expression of TSNHE3/TSNHE3 in the ctenidium of T. squamosa.

Molecular characterization of TSNHE3

Like other NHEs, NHE3 has a long C‐terminal cytoplasmic loop and a N‐terminal membrane domain. NHE3 has 11‐13 predicted transmembrane domains for the N‐terminal region (Orlowski et al. 1992; Zizak et al. 2000) and the TSNHE3 of T. squamosa has 12. An alignment of the TSNHE3 with NHE isoforms of other species revealed highly conserved residues such as Glu133, Phe167, Glu267, Asp272, and Glu406 (according to the alignment in Fig. 2). These amino acids coordinate the binding of Na+ for ion transport (Murtazina et al. 2001; Hisamitsu et al. 2007). The double glycine motif (Gly471/Gly472) in TM11 is important in coordinating the H+ binding site (Wakabayashi et al. 2003). Furthermore, Arg456, His539, and His559 are highly conserved and are responsible for intracellular pH sensing (Cha et al. 2003), and are therefore important for the exchanger's conformation changes and activation upon the detection of intracellular pH changes (Wakabayashi et al. 2003). Amiloride is an inhibitor of NHE (Benos 1982) and different NHE isoforms show varying affinity for this inhibitor with the following order of sensitivity: NHE1 ≥  NHE2 >  NHE5 >  NHE3 (Khadilkar et al. 2001). The Leu168 of human NHE1 (according to alignment in Fig. 2) was identified as an important residue involved in binding to amiloride. Mutagenesis of this residue to phenylalanine resulted in an increased resistance to amiloride similar to NHE3 (Slepkov et al. 2007). In TSNHE3, the leucine residue is replaced by an isoleucine and this may affect the binding affinity to amiloride. Other amino acid residues involved in binding to amiloride, including Glu361 and Gly367 (according to alignment in Fig. 2), are conserved in TSNHE3 (Khadilkar et al. 2001). The C‐terminal cytoplasmic domain of NHE3, which can bind to multiple proteins such as CHP, NHERF, CaM kinase II (CaM KII), ezrin, and phospholipase Cγ (Donowitz and Li 2007), is important for regulating the activity of the exchanger. Indeed, a CHP‐binding domain, which shares high similarity with other animal species, is present in TSNHE3. However, whether other proteins are involved in the regulation of TSNHE3 is unclear at present.

Of note, the molecular mass of TSNHE3 estimated through Western blotting (Fig. 8; 80 kDa) was slightly smaller than the estimated molecular mass based on the deduced amino acid sequence. Nonetheless, this is not uncommon as similar observations have been reported for NHE3 from the kidneys of mouse and rabbit, as well as Nhe3 from the gills of an euryhaline teleost, Fundulus heteroclitus (Biemesderfer et al. 1993; Edwards et al. 2005; Li et al. 2013). This phenomenon is common among membrane proteins which display differential binding to SDS resulting in anomalous SDS‐PAGE migration (Rath et al. 2009). Thus, some membrane proteins may move faster in SDS‐PAGE and appear to have a smaller molecular mass than expected (Thornhill and Levinson 1987).

Subcellular localization of NHE3 in the ctenidia of T. squamosa

Immunofluorescence microscopy revealed that TSNHE3 was localized to the apical membrane of epithelial cells along the ctenidial filaments of T. squamosa. This is in agreement with the subcellular localization of NHE3 in other types of epithelium. NHE3 is found mainly in the brush border/apical membrane of duodenum, jejunum, ileum, proximal colon, gall bladder, proximal tubule, and thick ascending limb, as well as the proximal portion of the long descending thin limb of Henle (Zachos et al. 2005). In the intestine and proximal tubule, NHE3 operates at the apical membrane to facilitate the absorption of large amounts of Na+ through a high capacity and low efficiency process called neutral NaCl absorption (Brett et al. 2005). NHE3 is also expressed in the apical membrane of branchial epithelial cells in teleost fishes (Claiborne et al. 1999; Choe et al. 2002; Edwards et al. 2005). In gills of freshwater teleosts, the apical NHE3 may help to absorb Na+ from the external medium, while in gills of marine teleosts, the apical NHE3 may be involved in the excretion of H+ for acid‐base balance (Claiborne et al. 1999). Similarly, the apical TSNHE3 expressed in the filamentous epithelial cells of the ctenidium of T. squamosa may function to excrete H+ in exchange for Na+ for acid‐base regulation.

It has been established that certain channels (Bkaily 1994), Ca2+‐ATPase (Abernica et al. 2003), Na+/K+‐ATPase (Garner 2002), Na+/Ca2+ exchanger (Xie et al. 2002), and NHE (Bkaily et al. 2002) are expressed in the nuclear envelope membranes and nucleoplasm of several types of cells of different animal species. Specifically, NHE of the nuclear envelope membranes can be involved in the regulation of nucleoplasmic pH, and to operate in collaboration with the Na+/Ca2+ exchanger to facilitate the uptake of cytoplasmic Ca2+ by the nucleus (Bkaily et al. 2004). The regulation of peri‐nucleoplasmic and nucleoplasmic pH as well as Ca2+ and Na+ concentrations may play an important role in modulating nuclear activities such as gene expression, protein synthesis and trafficking of macromolecules through the nuclear pore complex (Bkaily et al. 2006). As some of the nuclei in the ctenidium are TSNHE3‐immunopositive, it is possible that TSNHE3 is involved in regulating nucleoplasmic pH in the ctenidial epithelial cells of T. squamosa. Light‐enhanced calcification must be supported by an increase in the uptake of Ca2+ from the environment. At present, the sites and mechanisms of increased Ca2+ uptake in giant clams is uncertain, but it is possible that increased Ca2+ uptake occurs through the ctenidium, and if that is the case, TSNHE3 could be involved in the direct and indirect maintenance of nucleoplasmic pH and Ca2+ concentration, respectively. Hence, efforts should be made in the future to examine the possible role of the ctenidium in increased Ca2+ uptake in T. squamosa exposed to light.

Light‐dependent expression of TSNHE3/TSNHE3 in the ctenidia of T. squamosa

The ctenidium is nonpigmented and contains much lower quantities of symbiotic zooxanthellae as compared with the extensible outer mantle (Ip et al. 2015). A pair of ctenidia is positioned inside the mantle cavity shielded from direct illumination. In general, light‐specific sensors contain pigments that can be oxidized by light, and animal tissues without pigments are usually not light‐responsive. However, our results reveal that the mRNA expression level and protein abundance of TSNHE3/TSNHE3 in the ctenidia of T. squamosa are light‐dependent, which suggest for the first time that TSNHE3 may play an indirect but important role in light‐enhanced calcification. Light exposure might lead to upregulation of the transcription and translation of TSNHE3/TSNHE3. Alternatively, there could be a downregulation in the degradation or turnover of TSNHE3/TSNHE3 in response to light. It is possible that light is detected directly by the host clam through its siphonal eyes (Wilkens 1986), which transmit neural signals to the ctenidia. Alternatively, the symbiotic zooxanthellae residing in the extensible outer mantle or the ctenidia may act as “light‐sensing” elements and produce some signaling molecules for the clam host as proposed previously (Ip et al. 2015). These signaling molecules, after being released to the extracellular fluid of the clam host, may activate the transcription and translation of TSNHE3/TSNHE3 in the epithelial cells of the ctenidia. Hence, it would be essential to examine the light‐sensing role of zooxanthellae in their symbiotic relationship with the host clam in the future.

The increase in expression of TSNHE3/TSNHE3 in the ctenidium can be interpreted as an important light‐dependent response to increase H+ excretion, which denotes an important relationship between ctenidial TSNHE3 and light‐enhanced calcification in T. squamosa. As calcification leads to the production of one mole of H+ for every mole of CaCO3 generated in the extrapallial fluid, the adjacent shell‐facing epithelium of the inner mantle must rapidly remove the excess H+ during light‐enhanced calcification. Excess H+ has to be transported across the shell‐facing epithelium of the inner mantle to the hemolymph in order to avoid intracellularly acidification in these epithelial cells. Our results suggest that the excess H+ transported to the hemolymph can be shuttled to and excreted through the ctenidia to achieve whole‐body acid‐base balance. More importantly, they indicate that light‐enhanced calcification in giant clams involves a collaboration between the inner mantle and the ctenidia, which, despite being physically separated, are connected through the hemolymph.

Perspectives and significance

Several hypotheses have been proposed to explain light‐enhanced calcification in hard corals (Tambutté et al. 2011), and it is assumed that they can also be applied to light‐enhanced calcification in giant clams. For hard corals (Miller and Yellowlees 1989), zooxanthellae are found intracellularly inside symbiosomes in host cells which are adjacent to the coelenteron and close to the calcification site. Hence, Goreau (1959) proposed that H+ released during calcification in hard corals could react with HCO3 − to form CO2, and photosynthesis in the symbiotic zooxanthellae could drain CO2 from the calcification site and thus favor CaCO3 precipitation. In contrast, giant clams harbor extracellular zooxanthellae mainly in the extensible outer mantle which is far away from the site of calcification. If the excess H+ produced during light‐enhanced calcification was to react with HCO3 − in the extrapallial fluid to produce CO2, it would reduce the concentration of HCO3 − therein and lower the solubility product of [Ca2+] and [HCO3 −], which would reduce the rate of CaCO3 precipitation. Moreover, even if occurred, the CO2 produced in the extrapallial fluid would not be readily available to the majority of zooxanthellae residing remotely in the extensible outer mantle. Rather, when taken together with information in the literature, our results indicate that the H+ produced in the extrapallial fluid of T. squamosa during light‐enhanced calcification can be transported into the inner mantle tentatively through an unknown NH4 + transporter (Ip et al. 2006, 2015) or plasma membrane Ca2+‐ATPase (Sano et al. 2012), and the H+ is then shuttled through the hemolymph to the ctenidia where it is excreted by the apical TSNHE3 in exchange for Na+. Compared with corals, giant clams have more complex organs/tissues with a considerable degree of division of labor between them. Hence, it is not unexpected that light‐enhanced calcification in T. squamosa requires the cooperation between the inner mantle and the ctenidia. More importantly, our results demonstrate that light can affect the expression of a host's transport mechanism engaging indirectly in the calcification process in an organ remote from the calcification site, providing new insights into the mechanisms of light‐enhanced calcification in giant clams.

Conflict of Interest

No conflicts of interest, financial or otherwise, are declared by the authors.

Data Accessibility

Acknowledgements

Y. K. Ip thanks Peter K. L. Ng for soliciting funding for and useful discussion on this study.

Hiong K. C., Cao‐Pham A. H., Choo C. Y. L., Boo M. V., Wong W. P., Chew S. F., Ip Y. K.. Light‐dependent expression of a Na+/H+ exchanger 3‐like transporter in the ctenidium of the giant clam, Tridacna squamosa, can be related to increased H+ excretion during light‐enhanced calcification. Physiol Rep, 5 (8), 2017, e13209, doi: 10.14814/phy2.13209

Funding Information

This study was supported by the Singapore Millennium Foundation through grant R‐347‐000‐212‐592 to Y. K. Ip.

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