Table 2.
Promoter prediction tool | Genes with ≥1 TSSpr | Total number of TSSpr | TP1 | FP | FN | Sn, % | P1,% | F1,% |
---|---|---|---|---|---|---|---|---|
bTTSSfinder | 197 | 355 | 143 | 212 | 57 | 71.5 | 40.3 | 51.5 |
BPROM | 200 | 569 | 130 | 439 | 70 | 65.0 | 22.9 | 33.8 |
NNPP2 | 175 | 460 | 109 | 351 | 91 | 54.5 | 23.7 | 33.0 |
PromPredict | 74 | 149 | 0 | 149 | 200 | 0.0 | 0.0 | 0.0 |
Prediction is true, if distance between annotated and predicted TSSs is 50 bp or less.TSSpr: predicted TSS.