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Proceedings of the National Academy of Sciences of the United States of America logoLink to Proceedings of the National Academy of Sciences of the United States of America
. 1990 Sep;87(18):7005–7009. doi: 10.1073/pnas.87.18.7005

Somatic cell hybrid and long-range physical mapping of 11p13 microdissected genomic clones.

L M Davis 1, G Senger 1, H J Lüdecke 1, U Claussen 1, B Horsthemke 1, S S Zhang 1, B Metzroth 1, K Hohenfellner 1, B Zabel 1, T B Shows 1
PMCID: PMC54671  PMID: 2169618

Abstract

Microdissection and microcloning of banded human metaphase chromosomes have been used to construct a genomic library of 20,000 clones that is highly enriched for chromosome 11p13 DNA sequences. Clones from this library have been mapped on a panel of human-rodent somatic cell hybrids that divides the region from distal p12 to proximal p14 into seven physical intervals, A total of 1500 clones has been isolated, 250 clones have been characterized, and 58 clones have been mapped. Six of the clones were used to complete a long-range physical map of 7.5 megabases through the region. Two of the clones are localized to the Wilms tumor (WT) region, three are localized to the aniridia (AN2) region, and two are localized to the region between WT and AN2. The library represents DNA sequences spanning a distance of approximately 13 x 10(6) base pairs, with an average density of one clone per 37,000 base pairs.

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Selected References

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  1. Bickmore W., Christie S., van Heyningen V., Hastie N. D., Porteous D. J. Hitch-hiking from HRAS1 to the WAGR locus with CMGT markers. Nucleic Acids Res. 1988 Jan 11;16(1):51–60. doi: 10.1093/nar/16.1.51. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Call K. M., Glaser T., Ito C. Y., Buckler A. J., Pelletier J., Haber D. A., Rose E. A., Kral A., Yeger H., Lewis W. H. Isolation and characterization of a zinc finger polypeptide gene at the human chromosome 11 Wilms' tumor locus. Cell. 1990 Feb 9;60(3):509–520. doi: 10.1016/0092-8674(90)90601-a. [DOI] [PubMed] [Google Scholar]
  3. Church G. M., Gilbert W. Genomic sequencing. Proc Natl Acad Sci U S A. 1984 Apr;81(7):1991–1995. doi: 10.1073/pnas.81.7.1991. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Claussen U., Klein R., Schmidt M. A pipette method for rapid karyotyping in prenatal diagnosis. Prenat Diagn. 1986 Nov-Dec;6(6):401–408. doi: 10.1002/pd.1970060603. [DOI] [PubMed] [Google Scholar]
  5. Compton D. A., Weil M. M., Bonetta L., Huang A., Jones C., Yeger H., Williams B. R., Strong L. C., Saunders G. F. Definition of the limits of the Wilms tumor locus on human chromosome 11p13. Genomics. 1990 Feb;6(2):309–315. doi: 10.1016/0888-7543(90)90571-b. [DOI] [PubMed] [Google Scholar]
  6. Compton D. A., Weil M. M., Jones C., Riccardi V. M., Strong L. C., Saunders G. F. Long range physical map of the Wilms' tumor-aniridia region on human chromosome 11. Cell. 1988 Dec 2;55(5):827–836. doi: 10.1016/0092-8674(88)90138-9. [DOI] [PubMed] [Google Scholar]
  7. Davis L. M., Byers M. G., Fukushima Y., Qin S. Z., Nowak N. J., Scoggin C., Shows T. B. Four new DNA markers are assigned to the WAGR region of 11p13: isolation and regional assignment of 112 chromosome 11 anonymous DNA segments. Genomics. 1988 Oct;3(3):264–271. doi: 10.1016/0888-7543(88)90087-0. [DOI] [PubMed] [Google Scholar]
  8. Davis L. M., Everest A. M., Simola K. O., Shows T. B. Long-range restriction map around 11p13 aniridia locus. Somat Cell Mol Genet. 1989 Nov;15(6):605–615. doi: 10.1007/BF01534921. [DOI] [PubMed] [Google Scholar]
  9. Davis L. M., Stallard R., Thomas G. H., Couillin P., Junien C., Nowak N. J., Shows T. B. Two anonymous DNA segments distinguish the Wilms' tumor and aniridia loci. Science. 1988 Aug 12;241(4867):840–842. doi: 10.1126/science.2841760. [DOI] [PubMed] [Google Scholar]
  10. Feinberg A. P., Vogelstein B. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem. 1983 Jul 1;132(1):6–13. doi: 10.1016/0003-2697(83)90418-9. [DOI] [PubMed] [Google Scholar]
  11. Francke U., Holmes L. B., Atkins L., Riccardi V. M. Aniridia-Wilms' tumor association: evidence for specific deletion of 11p13. Cytogenet Cell Genet. 1979;24(3):185–192. doi: 10.1159/000131375. [DOI] [PubMed] [Google Scholar]
  12. Fraumeni J. F., Jr, Glass A. G. Wilms' tumor and congenital aniridia. JAMA. 1968 Oct 21;206(4):825–828. [PubMed] [Google Scholar]
  13. Fuscoe J. C., Clark L. M., Van Dilla M. A. Construction of fifteen human chromosome-specific DNA libraries from flow-purified chromosomes. Cytogenet Cell Genet. 1986;43(1-2):79–86. doi: 10.1159/000132301. [DOI] [PubMed] [Google Scholar]
  14. Gessler M., Bruns G. A. A physical map around the WAGR complex on the short arm of chromosome 11. Genomics. 1989 Jul;5(1):43–55. doi: 10.1016/0888-7543(89)90084-0. [DOI] [PubMed] [Google Scholar]
  15. Gessler M., Poustka A., Cavenee W., Neve R. L., Orkin S. H., Bruns G. A. Homozygous deletion in Wilms tumours of a zinc-finger gene identified by chromosome jumping. Nature. 1990 Feb 22;343(6260):774–778. doi: 10.1038/343774a0. [DOI] [PubMed] [Google Scholar]
  16. Gessler M., Simola K. O., Bruns G. A. Cloning of breakpoints of a chromosome translocation identifies the AN2 locus. Science. 1989 Jun 30;244(4912):1575–1578. doi: 10.1126/science.2544995. [DOI] [PubMed] [Google Scholar]
  17. Gessler M., Thomas G. H., Couillin P., Junien C., McGillivray B. C., Hayden M., Jaschek G., Bruns G. A. A deletion map of the WAGR region on chromosome 11. Am J Hum Genet. 1989 Apr;44(4):486–495. [PMC free article] [PubMed] [Google Scholar]
  18. Glaser T., Lewis W. H., Bruns G. A., Watkins P. C., Rogler C. E., Shows T. B., Powers V. E., Willard H. F., Goguen J. M., Simola K. O. The beta-subunit of follicle-stimulating hormone is deleted in patients with aniridia and Wilms' tumour, allowing a further definition of the WAGR locus. 1986 Jun 26-Jul 2Nature. 321(6073):882–887. doi: 10.1038/321882a0. [DOI] [PubMed] [Google Scholar]
  19. Jones C., Kao F. T. Regional mapping of the gene for human lysosomal acid phosphatase (ACP2) using a hybrid clone panel containing segments of human chromosome 11. Hum Genet. 1978 Nov 24;45(1):1–10. doi: 10.1007/BF00277567. [DOI] [PubMed] [Google Scholar]
  20. Korneluk R. G., Quan F., Lewis W. H., Guise K. S., Willard H. F., Holmes M. T., Gravel R. A. Isolation of human fibroblast catalase cDNA clones. Sequence of clones derived from spliced and unspliced mRNA. J Biol Chem. 1984 Nov 25;259(22):13819–13823. [PubMed] [Google Scholar]
  21. Lüdecke H. J., Senger G., Claussen U., Horsthemke B. Cloning defined regions of the human genome by microdissection of banded chromosomes and enzymatic amplification. Nature. 1989 Mar 23;338(6213):348–350. doi: 10.1038/338348a0. [DOI] [PubMed] [Google Scholar]
  22. Lüdecke H. J., Senger G., Claussen U., Horsthemke B. Construction and characterization of band-specific DNA libraries. Hum Genet. 1990 May;84(6):512–516. doi: 10.1007/BF00210800. [DOI] [PubMed] [Google Scholar]
  23. MILLER R. W., FRAUMENI J. F., Jr, MANNING M. D. ASSOCIATION OF WILMS'S TUMOR WITH ANIRIDIA, HEMIHYPERTROPHY AND OTHER CONGENITAL MALFORMATIONS. N Engl J Med. 1964 Apr 30;270:922–927. doi: 10.1056/NEJM196404302701802. [DOI] [PubMed] [Google Scholar]
  24. Mierau G. W., Beckwith J. B., Weeks D. A. Ultrastructure and histogenesis of the renal tumors of childhood: an overview. Ultrastruct Pathol. 1987;11(2-3):313–333. doi: 10.3109/01913128709048329. [DOI] [PubMed] [Google Scholar]
  25. Moore J. W., Hyman S., Antonarakis S. E., Mules E. H., Thomas G. H. Familial isolated aniridia associated with a translocation involving chromosomes 11 and 22 [t(11;22)(p13;q12.2)]. Hum Genet. 1986 Apr;72(4):297–302. doi: 10.1007/BF00290952. [DOI] [PubMed] [Google Scholar]
  26. Olson M., Hood L., Cantor C., Botstein D. A common language for physical mapping of the human genome. Science. 1989 Sep 29;245(4925):1434–1435. doi: 10.1126/science.2781285. [DOI] [PubMed] [Google Scholar]
  27. Perlman J., Fuscoe J. C. Molecular characterization of the purity of seven human chromosome-specific DNA libraries. Cytogenet Cell Genet. 1986;43(1-2):87–96. doi: 10.1159/000132302. [DOI] [PubMed] [Google Scholar]
  28. Porteous D. J., Bickmore W., Christie S., Boyd P. A., Cranston G., Fletcher J. M., Gosden J. R., Rout D., Seawright A., Simola K. O. HRAS1-selected chromosome transfer generates markers that colocalize aniridia- and genitourinary dysplasia-associated translocation breakpoints and the Wilms tumor gene within band 11p13. Proc Natl Acad Sci U S A. 1987 Aug;84(15):5355–5359. doi: 10.1073/pnas.84.15.5355. [DOI] [PMC free article] [PubMed] [Google Scholar]
  29. Riccardi V. M., Sujansky E., Smith A. C., Francke U. Chromosomal imbalance in the Aniridia-Wilms' tumor association: 11p interstitial deletion. Pediatrics. 1978 Apr;61(4):604–610. [PubMed] [Google Scholar]
  30. Senger G., Lüdecke H. J., Horsthemke B., Claussen U. Microdissection of banded human chromosomes. Hum Genet. 1990 May;84(6):507–511. doi: 10.1007/BF00210799. [DOI] [PubMed] [Google Scholar]
  31. Shaw M. W., Falls H. F., Neel J. V. Congenital Aniridia. Am J Hum Genet. 1960 Dec;12(4 Pt 1):389–415. [PMC free article] [PubMed] [Google Scholar]
  32. Turleau C., de Grouchy J., Nihoul-Fékété C., Dufier J. L., Chavin-Colin F., Junien C. Del11p13/nephroblastoma without aniridia. Hum Genet. 1984;67(4):455–456. doi: 10.1007/BF00291410. [DOI] [PubMed] [Google Scholar]
  33. Watkins P. C., Eddy R., Beck A. K., Vellucci V., Leverone B., Tanzi R. E., Gusella J. F., Shows T. B. DNA sequence and regional assignment of the human follicle-stimulating hormone beta-subunit gene to the short arm of human chromosome 11. DNA. 1987 Jun;6(3):205–212. doi: 10.1089/dna.1987.6.205. [DOI] [PubMed] [Google Scholar]
  34. Young J. L., Jr, Miller R. W. Incidence of malignant tumors in U. S. children. J Pediatr. 1975 Feb;86(2):254–258. doi: 10.1016/s0022-3476(75)80484-7. [DOI] [PubMed] [Google Scholar]
  35. van Heyningen V., Boyd P. A., Seawright A., Fletcher J. M., Fantes J. A., Buckton K. E., Spowart G., Porteous D. J., Hill R. E., Newton M. S. Molecular analysis of chromosome 11 deletions in aniridia-Wilms tumor syndrome. Proc Natl Acad Sci U S A. 1985 Dec;82(24):8592–8596. doi: 10.1073/pnas.82.24.8592. [DOI] [PMC free article] [PubMed] [Google Scholar]

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