Erratum to: OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations

Erratum

After publication of the original article [1] the authors found the following errors had occurred:

1. Saccaromyces should be spelt Saccharomyces in Table 1. (Table 1)

2. Kluveromyces should be spelt Kluyveromyces in Table 1. (Table 1)

3. Table 4, columns 3, 5, 7 and 9: All values within these columns should be placed in brackets to indicate the standard deviation. (Table 4)

4. The legend for Table 4 should read: ‘Numbers shown are rounded mean values from 5 disjoint removed subsets of genes, with standard deviations bracketed and not ‘10 removed subsets’ as per the original article. (Table 4)

Table 1.

Species Set A, fungal species used for algorithm validation

Species Name	Source	Strain	Taxonomy ID	References
Eremothecium gossypii	JGIa	ATCC10895	284,811	[12]
Debaromyces hansenii	JGI	CBS767	284,592	[13] [14]
Kluyveromyces lactis	JGI	CLIB210	284,590	[13]
Saccharomyces cerevisiae	SGDb	S288C	559,292	[24]
Yarrowia lipolytica	JGI	CLIB122	284,591	[13]

^aJoint Genome Institute; ^bSaccharomyces Genome Database

Table 4.

Recovery of removed genes in A. thaliana, averaged over five runs

	10% annotations removed				90% annotations removed
	OrthoFiller		de novo		OrthoFiller		de novo
No. genes removed	2410		2410		21,683		21,683
Total genes founda	1233	(37.5)	13,184	(426.7)	11,480	(96.2)	42,504	(223.5)
Found genes which overlap removed genesa	1106	(37.5)	4918	(130.4)	11,343	(89.0)	35,609	(149.5)
Total recovered genesa	1035	(31.72)	2268	(16.4)	10,380	(59.7)	20,430	(33.0)
Number of split genesa	67	(5.4)	1213	(23.6)	944	(34.4)	7451	(37.7)
Mean pF-score of found genesa	0.75	(0.01)	0.45	(<0.01)	0.70	(<0.01)	0.55	(<0.01)
Mean oF-score of found genesa	0.94	(<0.01)	0.51	(<0.01)	0.89	(<0.01)	0.64	(<0.01)
High-quality found genes (pF-score ≥ 0.95)a	432.0	(29.3)	640.8	(27.4)	3419.8	(21.3)	9079.6	(99.5)
Lower-quality found genes (pF-score < 0.95)a	674.6	(32.1)	4277.2	(147.8)	7923.8	(99.5)	26,529.8	(201.3)
Mean pF-score of lower-quality genesa	0.61	(0.02)	0.31	(<0.01)	0.57	(<0.01)	0.33	(<0.01)
% of lower-quality genes with oF-score < 0.95a	34.6	(1.9)	81.1	(0.9)	43.4	(0.6)	73.9	(0.1)

^aNumbers shown are rounded mean values from 5 disjoint removed subsets of genes, with standard deviations bracketed

The original article has been corrected.

Corrected versions of all figures and tables are included in this Erratum:

Corrected Table 1

Corrected Table 4