Table 3.
Sequences with SNPs and corresponding accession numbers.
| Isolate code | Gene | Genotype | Accession number (new sequence) | Compared accession number |
|---|---|---|---|---|
| CD23 | bg | Assemblage D | KY942091 | KX164009 |
| YA16 | bg | Assemblage D | KY942092 | KX164008 |
| CD02/17/21 | bg | Assemblage C | KY979496 | JF422720 |
| CD18/27 | bg | Assemblage D | KY979497 | JX867770 |
| CD25/28/36/40 | bg | Assemblage C | KY979498 | JF422719 |
| CD31 | bg | Assemblage C | KY979499 | KU156667 |
| CD23/35 | bg | Assemblage D | KY979500 | KX164009 |
| CD33/YA60 | bg | Assemblage D | KY979501 | HQ538709 |
| YA49/ | bg | Assemblage C | KY979502 | AY545646 |
| LS19 | bg | Assemblage D | KY979503 | JN416559 |
| YA16 | gdh | Assemblage C | KY942086 | EF507635 |
| CD17/Y49 | gdh | Assemblage C | KY979488 | EF507623 |
| CD18/21/25/28/31/32/40/YA60 | gdh | Assemblage C | KY979489 | EF507635 |
| CD27/33 | gdh | Assemblage D | KY979490 | EF507627 |
| CD35 | gdh | Assemblage D | KY979491 | EF507639 |
| LA19 | gdh | Assemblage D | KY979492 | EF507638 |
| CD18 | tpi | Assemblage C | KY942087 | KX014801 |
| CD21/YA49 | tpi | Assemblage C | KY942088 | KX014804 |
| CD28 | tpi | Assemblage C | KY942089 | KF993723 |
| CD40 | tpi | Assemblage C | KY942090 | KP866790 |
| CD17 | tpi | Assemblage C | KY979493 | HG970114 |
| CD25 | tpi | Assemblage C | KY979494 | KX014796 |
| YA60 | tpi | Assemblage C | KY979495 | JN587492 |