Table 2.

Most highly radiation‐induced genes in Deinococcus deserti

IRvsNIa	IRvs42IRb	Genec	Product	RDRMd
>10	>10	Deide_01090	DinB family protein
		Deide_01160	DNA damage response protein DdrD	+
		Deide_02990	DNA damage response protein DdrB	+
		Deide_04721	Conserved protein	+
		Deide_09148	Putative protein	(+)
		Deide_09150	DNA damage response protein DdrA	+
		Deide_18350	Holliday junction DNA helicase RuvB
		Deide_18730	SWIM zinc finger domain protein	+
		Deide_20570	XRE family transcriptional regulator DdrOC	+
		Deide_20580	Conserved protein	+
		Deide_23280	DNA damage response protein DdrC	+
		Deide_2p01380	DNA repair protein PprA	+
		Deide_3p00210	RecAP3	+
		Deide_3p02170	XRE family transcriptional regulator DdrOP3	+
	>5	Deide_01100	DinB family protein
		Deide_19440	2′‐5′ RNA ligase (LigT)	(+)
		Deide_19450	RecAC	(+)
		Deide_1p01260	RecAP1	+
	>2.5	Deide_15490	DNA gyrase, subunit B (GyrB)	+
	not >2.5	Deide_00110	30S ribosomal protein S18 (RpsR)	(+)
>5	>5	Deide_02842	Type II restriction enzyme	+
		Deide_09130	Trans‐aconitate 2‐methyltransferase
		Deide_11320	DNA helicase RecQ	+
		Deide_18690	VWA domain‐containing CoxE‐like protein	(+)
		Deide_18710	Conserved protein	(+)
		Deide_18720	Conserved protein	(+)
		Deide_19430	CinA‐like protein	+
	>2.5	Deide_00120	Single‐stranded DNA‐binding protein (SSB)	+
		Deide_03120	Excinuclease ABC subunit B (UvrB)	+
		Deide_11446	Putative protein
		Deide_21600	RtcB family protein
	not >2.5	Deide_00100	50S ribosomal protein L9 (RplI)	(+)
		Deide_08010	ABC transporter permease
		Deide_20140	Putative N‐acetyltransferase
		Deide_1p01870	Repressor LexAP1

^aFold change in irradiated wild‐type and ΔddrO _C versus non‐irradiated wild‐type and ΔirrE.

^bFold change in irradiated wild‐type and ΔddrO _C versus irradiated ΔirrE (RD42).

^cBold face indicates a fold change of at least 2.5 in non‐irradiated ΔddrO _C versus non‐irradiated wild‐type and ΔirrE.

^dRDRM identified in previous studies. +, upstream of the indicated gene; (+), upstream of the operon containing the indicated gene.