Proteomics of acute heart failure in a rat post-myocardial infarction model

Abstract

The aim of the present study was to identify the mechanisms underlying the development of post-myocardial infarction (post-MI) heart failure. The left anterior descending coronary artery of rats was occluded to mimic human ischemic heart disease. Linear Trap Quadropole OrbiTrap mass spectrometry was used to profile the expressions of energy metabolism-associated and calcium-binding proteins in the post-MI and control groups. Using the online Protein Analysis Through Evolutionary Relationships classification system, 78 differentially expressed proteins were identified, including 50 downregulated proteins and 28 upregulated proteins in post-MI group when compared with the control group. The differentially expressed proteins were closely associated with energy metabolism, contractile function, calcium handling, pathological hypertrophy and cardiac remodeling. These results were further validated using western blotting. At different postoperative time points (1st and 14th day following surgery) during the progression of advanced heart failure post-MI, dynamic alterations in differential protein expression were identified. The expression of the vitamin D protein was significantly upregulated on the 1st day post-MI however, was then downregulated with progression of the disease on the 14th day post-MI. These results identified various target proteins associated with the disease, which may be used as diagnostic markers.

Introduction

Heart failure is a progressive and complex clinical syndrome that leads to impaired functional cardiac ability. It is defined as a symptom resulting in ventricular dysfunction (1) and is characterized by high morbidity and mortality. Contractile dysfunction is often linked to chronic energy deficiency and ventricular remodeling. It has previously been reported that ~50–60% of patients with heart failure have an enlarged left ventricle (LV) chamber and reduced ejection fraction (2,3). The majority of patients with heart failure have a history of hypertension and LV hypertrophy (4). A pronounced decrease in free fatty acid (FFA) β-oxidation in dilated cardiomyopathy has been identified in patients with Class II and III heart failure according to the New York Heart Association classifications when compared with age-matched healthy individuals (5,6). The same study additionally reported that during the progression of congestive heart failure, the increased ventricular remodeling elevated local oxygen consumption, and worsened the induced energy deficiency and ejection function. As a result, the heart enters a cycle of impaired cardiac functioning. However, the understanding of differential protein expression in post-myocardial infarction (post-MI) heart failure remains relatively limited.

Linear Trap Quadropole (LTQ) OrbiTrap mass spectrometry is a protein quantification strategy that provides relative and absolute measurements of proteins in complex mixtures (7). The present study was undertaken to investigate the differential protein expressions that are associated with advanced heart failure irrespective of treatment. LTQ OrbiTrap mass spectrometry was used to analyze the expression profiles of energy metabolism-associated, calcium-binding and cytoskeletal proteins in post-MI heart failure and control groups. The aim of the present study was to identify the target proteins that are associated with the disease in order to provide novel diagnostic markers and alternative therapies to reconstitute the energetic state and disrupt the damaging cycle of the failing heart.

Materials and methods

Acute heart failure model

All animal procedures and experiments were performed in accordance with the Guide for the Care and Use of Laboratory Animals published by the US National Institutes of Health [NIH publication 85(23), revised in 1996] (8). A total of 18 male Wistar rats (age, 12–14 weeks; weight, 250–300 g) were provided by the experimental animal center of Shandong University (Shandong, China). The rats were housed in a climate-controlled environment at a constant temperature of 22°C, relative humidity 50% and a 12-h dark/light cycle. Rats were fed standard laboratory chow, and allowed access to food and water ad libitum. The present study was conducted with approval from the Ethics Committee of Shandong University (Shandong, China).

The left anterior descending coronary artery of 12 rats was occluded as described previously (9). Rats were anaesthetized on postoperative days 1 and 14 with an intraperitoneal injection of 40 mg/100 g chloral hydrate and the hearts were exposed. The left anterior descending coronary artery was ligated at ~2–3 mm below the left auricle. The heart was repositioned in the chest and the chest was closed with a purse string suture. The animals were randomly divided into the following 3 groups (6 rats/group): Control group (untreated rats), the 1st day group (rats were euthanized on the 1st postoperative day) and the 14th day group (rats were euthanized on the 14th postoperative day). The left ventricles were obtained immediately following animal sacrifice and cut into two sections. The hearts were removed rapidly, the left and right atrium and right ventricle were removed and the left ventricle was divided into two parts along the long axis. One section was immersed in 4% paraformaldehyde at room temperature overnight, and the other section was immediately snap-frozen and stored in liquid nitrogen for further analysis.

On the 14th postoperative day (prior to euthanasia), acquired echocardiography was used to measure the left ventricular end-diastolic diameter (LVEDD), left ventricular end-systolic diameter (LVESD), left ventricular posterior wall end diastole and end systole (LVPWs and LVPWd, respectively), left ventricular ejection fraction (LVEF) and fractional shortening (FS).

Protein extraction

A 50 mg sample was taken from the LV of each rat following animal sacrifice, which was immediately snap-frozen and stored in liquid nitrogen. The samples were placed in liquid nitrogen and ground into a fine powder, homogenized in a lysate buffer (8 mol/l urea, 1 mol/l DTT, cocktail of protease inhibitors, 1 mg/ml leupeptin, 1 mg/ml aprotinin, 1 mg/ml pepstatin, radioimmunoprecipitation buffer and 0.1% PSMF) as previously described (10) and then incubated on ice for 30 min. The samples were further lysed by ultrasound for 3 cycles of 10 sec. The whole lysate was centrifuged for 15 min at 4°C and 14,000 × g, and the supernatant was collected.

Sample processing

Protein concentrations of the lysates were determined using a Bicinchoninic Acid Protein Assay kit (Beyotime Institute of Biotechnology, Haimen, China). Protein extract (30 µl) was mixed with 200 µl urea-acetate (UA) buffer (8 M urea in 0.1 mol/l Tris/HCl; pH 8.5) in a filter unit, centrifuged at 14,000 × g at 4°C for 15 min and then washed three times with 100 µl UA buffer. The flow-through was discarded from the collection tube. The concentrate was mixed with 100 µl indole acetic acid buffer (0.05 mol/l iodoacetamide in UA) and incubated in the dark at room temperature for 20 min, which was followed by centrifugation for 10 min at 14,000 × g. The concentrate was then washed twice with 100 µl UA buffer followed by two washes with 100 µl ammonium bicarbonate (ABC) buffer (0.05 M NH₄HCO₃ in water). A total of 40 µl ABC buffer with trypsin (1:100) was added to the filter and incubated overnight at 37°C to achieve complete digestion. A further 40 µl ABC buffer was added and centrifuged at 14,000 × g for 10 min. The final solution was dried under a vacuum and stored in a freezer at −80°C.

Sample purification with C18 Ziptip column

Samples were diluted in 40 µl 0.1% trifluoroacetic acid (TFA). A total of 200 µl 100% acetonitrile was added to a Ziptip (Merck KGaA, Darmstadt, Germany) and centrifuged at 800 × g for 2 min; this step was repeated twice. The concentrate was mixed with 200 µl 0.1% TFA and centrifuged at 800 × g for 2 min. TFA was added and centrifugation was performed eight times. The Ziptip was washed twice with 0.1% TFA and centrifuged at 800 × g for 2 min. The peptides were eluted with 40 µl formic acid, dried under a vacuum and stored in a freezer at −80°C.

LTQ OrbiTrap mass spectrometry

A total of four injections were made into a Nano LC 1000 (Proxeon; Thermo Fisher Scientific, Inc.) interface of the LTQ OrbiTrap elite mass spectrometer (Thermo Fisher Scientific, Inc.) via a nano source. Samples of 2 µg were diluted in Solvent A (99.9% water/0.1% formic acid) and loaded onto a 150 µm × 2 cm peptrap 300 Å C18 pre-column. A total of 2 µg peptide was eluted into a 75 µm × 25 cm 100 Å C18 analytical column (self-packed) and separated with a linear gradient of 5–30% Solvent B (99.9% acetonitrile/0.1% formic acid) for 5 min and then 69% Solvent B for 115 min. The flow rate was 250 nl/min. The survey scans were acquired in the OrbiTrap analyzer with 60,000 resolution at 400 m/z and 275°C. The automated gain control target was set at the level of 1×106. The 25 most intense ions were fragmented using collisionally induced dissociation in the linear ion trap. The precursor ions were fragmented with helium gas for 30 msec with a normalized collision energy of 35. The dynamic exclusion parameters were set to exclude ions previously selected for fragmentation for 1 min. All data were acquired in the reduced profile mode to accommodate further downstream processing.

Protein identification and quantification

Protein identification was accomplished using Proteome Discoverer v1.4 (Thermo Fisher Scientific, Inc.) and Mascot Server v2.4 software (www.matrixscience.com/server.html). The Mascot search engine was used to identify consolidated data in the Uniprot rat protein database (www.uniprot.org), with carbamidomethylation + 57,005 selected as the fixed modification and oxidation of methionine + 15,995 set as the variable modification. The mass tolerance was set at 10 ppm and the MS/MS tolerance was set at 0.8 Da (10). The trypsin enzymolysis maximum leakage cut-off value was set at 2, and the important threshold value was set at 0.01 to ensure a false discovery rate of <1%. Protein quantification was obtained via unique peptides. P<0.05 was considered significant for protein quantification. To designate significant alterations in protein expression, fold changes <2.0 were set as the cut-offs. This analysis was performed twice.

Bioinformatic analyses

Analyses of protein (and their genes) classification were performed with tools available on the Protein Analysis Through Evolutionary Relationships online classification system (PANTHER; pantherdb.org).

Hematoxylin and eosin (H&E) staining

The myocardial tissue was embedded in conventional paraffin and sectioned into 5-µm-thick slides. Sections were dewaxed in xylene at room temperature and rehydrated in graded ethanol (dehydrated ethanol for 5 min, dehydrated ethanol for 5 min, 90% ethanol for 5 min, 90% ethanol for 5 min, 75% ethanol for 5 min and 75% ethanol for 5 min). Following the standard process of H&E staining (10% hematoxylin for 3–5 min and 0.5% eosin for 1 min at room temperature) (11), the specimens were observed under a light microscope (Leica DM4000B; Leica Microsystems GmbH, Wetzlar, Germany; magnification, ×400) and the ratio of myocardial cells to capillaries, the diameter of cardiomyocytes, cell density, capillary density, intracellular substance and intercellular space were examined in 5 randomly selected fields in order to evaluate the extent of myocardial hypertrophy.

Western blot analysis

The LTQ OrbiTrap protein expression results were validated via western blot analysis. Total protein extracts used for the western blot analysis were obtained using the aforementioned procedure. The samples containing 100 µg of total proteins were separated using 6% SDS-PAGE and transferred onto polyvinylidene fluoride membranes (Merck KGaA) via electro-blotting. The membranes were incubated in TBST containing 5% non-fat dried milk for 1 h at 25°C. The membranes were probed overnight at 4°C with rabbit anti-myosin 7 polyclonal antibody (cat. no. 22280-1-AP; ProteinTech Group, Inc., Chicago, IL, USA), rabbit anti-Vitamin D binding protein (VDBP) polyclonal antibody (cat. no. 16922-1-AP; ProteinTech), rabbit anti-gelsolin polyclonal antibody (cat. no. PB0198; Wuhan Boster Biological Technology, Ltd., Wuhan, China) and rabbit anti-Voltage-dependent L-type calcium channel subunit α1D polyclonal antibody (cat. no. PB0286; Wuhan Boster Biological Technology, Ltd.). GAPDH (cat. no. 10494-1-AP; ProteinTech) was used as an internal control. All primary antibodies were used at a 1:1,000 dilution. Horseradish peroxidase goat anti-rabbit IgG antibodies (cat. no. SA00001-2; ProteinTech) were used as the secondary antibodies at a dilution of 1:2,000. The membranes were developed with enhanced chemiluminescence plus reagent (Beyotime Institute of Biotechnology) and bands were quantified by densitometry using ImageJ2x software (version 2.14.7; National Institutes of Health, Bethesda, MD, USA). Experiments were repeated independently 3 times.

Immunohistochemistry

The myocardial tissue was fixed in 4% paraformaldehyde at room temperature overnight, embedded in conventional paraffin and sectioned using an SP-9001 IHC staining kit (ZSGD-BIO, Beijing, China) into 5-µm thickness in accordance with the manufacturer's protocol. Sections were dewaxed in xylene at room temperature, rehydrated in graded ethanol (dehydrated ethanol for 5 min, dehydrated ethanol for 5 min, 90% ethanol for 5 min, 90% ethanol for 5 min, 75% ethanol for 5 min and 75% ethanol for 5 min) and incubated with 0.3% hydrogen peroxide to inactivate endogenous peroxidase activity. Antigen retrieval was achieved by incubating the slides at high pressure for 2 min (~120°C) with sodium citrate (pH 6.0). Following blocking with goat serum (ZSGD-BIO) at 37°C for 30 min, the sections were incubated with rabbit anti-myosin 7 polyclonal antibody (1:200; cat. no. 22280-1-AP; ProteinTech), rabbit anti-VDBP polyclonal antibody (1:100; cat. no. 16922-1-AP; ProteinTech), rabbit anti-gelsolin polyclonal antibody (1:50; cat. no. PB0198; Wuhan Boster Biological Technology, Ltd.) or rabbit anti-Voltage-dependent L-type calcium channel subunit α1D (Cav 1.3) polyclonal antibody (1:50; cat. no. PB0286; Wuhan Boster Biological Technology, Ltd.) overnight at 4°C and subsequently incubated with biotinylated secondary antibody working fluid at 37°C for 30 min (cat. no. SP 9001; IHC staining kit; ZSGB-BIO, Beijing, China). The specimens were stained with 0.05% 3,3′-diaminobenzidine for 1 min and re-dyed with 10% hematoxylin for 3-5 min at room temperature. The specimens were observed under a light microscope (Leica DM4000B; Leica Microsystems GmbH; magnification, ×400) and photographed. Brown reaction granules observed in the cells indicated a positive result.

Statistical analysis

Data was analyzed using SPSS software (version 18.0; SPSS, Inc., Chicago, IL, USA). One-way analysis of variance followed by Tukey's multiple comparison test was used to determine the statistical differences among the post-MI and control groups. Data are presented as the mean ± standard deviation. P<0.05 was considered to indicate a statistically significant difference.

Results

Morphological alterations post-MI

To verify the establishment of the myocardial infarction model in rats, H&E staining of the cardiomyocytes was performed. In the control group specimens, a neat arrangement and clearly visible stripes were observed in cardiomyocytes. Conversely, the cardiomyocytes from the 1st and 14th day groups exhibited varying sizes and uneven staining. In addition, an increase in cell diameter and intercellular space, and an irregular arrangement of cardiac muscle fibers was observed following MI (Fig. 1). This suggests that the arrangement of cardiomyocytes in post-MI groups is irregular when compared with the control group.

Figure 1.

Morphological alterations in rat myocardial tissues visualized by H&E staining. The left anterior descending coronary artery in rats was occluded, then on the 1st or 14th day following the operation, myocardial tissues were embedded in conventional paraffin, sectioned and stained with H&E. Magnification, ×400. H&E, hematoxylin and eosin. Control group, operation with no occlusion (untreated); 1st day group, tissues were taken from rats 1 day following surgical procedures; 14th day group, tissues were taken from rats 14 days following surgical procedures.

LTQ OrbiTrap analysis

The present study then identified the differentially expressed proteins in MI model rats. Data from the LTQ OrbiTrap experiments contained 1,709 unique proteins from the cardiac tissues of the 14th day group, which included well-known markers associated with the cytoskeleton, energy metabolism and actin. In addition, 1,722 unique proteins were identified in the cardiac tissues of the 1st day group, and 2,148 unique proteins were observed in the cardiac tissues of the control group (Table I). Furthermore, 1,080 and 437 proteins were differentially expressed in the cardiac tissues of the 14th day group when compared with the 1st day group and the control group, respectively. When compared with the control group, 1,574 proteins were differentially expressed in the cardiac tissues of the 1st day group.

Table I.

Proteins with statistically significant differential expression in cardiac tissues among the control, 1st and 14th day groups.

			Differentially expressed proteins
			Control vs. 1st day (fold >2)		Control vs. 14th day (fold >2)		1st day vs. 14th day (fold >2)
Group	Protein count	Peptide count	Upregulated	Downregulated	Upregulated	Downregulated	Upregulated	Downregulated
Control	2148	9243	45	55	50	28	48	51
1st day	1722	7473
14th day	1709	7541

Control group, operation with no occlusion (untreated); 1st day group, tissues were taken from rats 1 day following surgical procedures; 14th day group, tissues were taken from rats 14 days following surgical procedures.

To identify proteins involved in post-MI heart failure, <2.0-fold expression was used as the cut-off. The results revealed that 99 proteins that were differentially expressed in the 14th and 1st day groups may be associated with the progression of heart failure. A further 100 proteins were differentially expressed between the 1st day and control groups. Comparisons between the control and 14th day groups revealed 78 differentially expressed proteins, including 50 upregulated proteins and 28 downregulated proteins in the control group (Table I).

The differentially expressed proteins in the control and 14th day groups are closely associated with energy metabolism (including glycolysis, mitochondrial tricarboxylic acid cycle and fatty acid β-oxidation), contractile function [β-myosin heavy chain isoforms (myosin-7)], calcium handling (Gelsolin, Cav 1.3, Galectin-3 and VDBP), pathologic hypertrophy (Gelsolin and Myosin-7) and cardiac remodeling (Fibrinogen β chain; Table II). Furthermore, dynamic alterations in differential protein expression at different time points (the 1st and 14th postoperative days) post-MI were observed (Table III). For example, Myosin-7 expression was almost unaltered on the 1st day post-MI however, it was significantly upregulated on the 14th day post-MI with the progression of heart failure, which was in accordance with a previous study (12). In the acute phase of heart failure, namely in the 1st day post-MI group, expression of Gelsolin, Cav1.3 and VDBP increased significantly, with a fold increase of 3.92, 7.09 and 11.77, respectively, when compared with the control group.

Table II.

Proteins with statistically significant differential expression between the control and 14th day groups.

Accession	Peptides	P-valuea	Fold changesa	Description	Function
RS7_RAT	1	7.86×10−3	757.53	40S ribosomal protein S7
SUCA_RAT	3 (2)	3.10×10−5	64.97	Succinyl-CoA ligase [ADP/GDP-forming] subunit α	Oxidoreductase
STIM1_RAT	6 (1)	8.62×10−6	7.94	Stromal interaction molecule 1
PER1_RAT	6 (1)	3.17×10−3	7.51	Period circadian protein homolog 1	Transcription cofactor
ERAP1_RAT	6 (1)	1.25×10−3	6.7	Endoplasmic reticulum aminopeptidase 1	Metalloprotease
P97573	9 (3)	0.01	6.47	Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1	Phosphatase
PALM_RAT	4 (1)	0.03	5.93	Paralemmin-1
MDHM_RAT	7 (2)	0.03	5.43	Malate dehydrogenase	Dehydrogenase
ES1_RAT	3 (2)	4.24×10−3	3.71	ES1 protein homolog
ACON_RAT	8 (3)	2.04×10−3	3.48	Aconitate hydratase	Dehydrogenase
ODPA_RAT	5 (3)	9.40×10−4	3.02	Pyruvate dehydrogenase E1 component subunit α, somatic form	Dehydrogenase
3HIDH_RAT	3 (2)	0.05	2.91	3-hydroxyisobutyrate dehydrogenase	Dehydrogenase
H31_RAT	5 (2)	1.29×10−3	2.85	Histone H3.1
DESM_RAT	7 (3)	0.01	2.83	Desmin	Structural protein
KCRS_RAT	9 (3)	5.03×10−4	2.81	Creatine kinase S-type	Amino acid kinase
DHSD_RAT	1	1.09×10−3	2.74	Succinate dehydrogenase [ubiquinone] cytochrome b small subunit
FUMH_RAT	11 (4)	0.01	2.71	Fumarate hydratase	Lyase
CH60_RAT	3 (1)	0.01	2.64	60 kDa heat shock protein	Chaperonin
ITB1_RAT	7 (4)	0.01	2.52	Integrin β-1
SMC3_RAT	25 (4)	2.99×10−4	2.43	Structural maintenance of chromosomes protein 3
THIOM_RAT	2 (1)	0.04	2.4	Thioredoxin
ATPO_RAT	9 (5)	3.86×10−3	2.39	ATP synthase subunit Ol	ATP synthase
GRP75_RAT	16 (3)	0.03	2.34	Stress-70 protein
ACADL_RAT	8 (4)	7.38×10−3	2.3	Long-chain specific acyl-CoA dehydrogenase	Transferase
ALDH2_RAT	7 (3)	0.03	2.28	Aldehyde dehydrogenase
ATP5E_RAT	2 (1)	5.64×10−3	2.19	ATP synthase subunit epsilon	ATP synthase
ATPB_RAT	4 (3)	7.99×10−4	2.14	ATP synthase subunit β	ATP synthase
ECHM_RAT	4 (1)	2.97×10−3	2.1	Enoyl-CoA hydratase	Acetyltransferase
MAVS_RAT	2	0.03	2.02	Mitochondrial antiviral-signaling protein
ANXA6_RAT	10 (7)	1.92×10−5	−2.07	Annexin A6
SPA3N_RAT	2 (1)	0.02	−2.08	Serine protease inhibitor A3N	Serine protease inhibitor
PSB1_RAT	3 (2)	1.83×10−3	−2.1	Proteasome subunit β type-1	Protease
PGK1_RAT	9 (3)	2.47×10−4	−2.16	Phosphoglycerate kinase 1	Carbohydrate kinase
RL26_RAT	4 (1)	9.18×10−4	−2.24	60S ribosomal protein L26	Ribosomal protein
CDK7_RAT	5 (2)	0.01	−2.25	Cyclin-dependent kinase 7 (Fragment)	Non-receptor serine/threonine protein kinase
FINC_RAT	9 (6)	3.50×10−3	−2.28	Fibronectin	Signaling molecule
CHD8_RAT	8 (2)	1.55×10−3	−2.31	Chromodomain-helicase-DNA-binding protein 8	DNA helicase
CDS2_RAT	1	0.03	−2.46	Phosphatidate cytidylyltransferase 2	Nucleotidyltransferase
MYH7_RAT	101 (17)	9.06×10−6	−2.48	Myosin-7	G-protein modulator
APOH_RAT	1	1.44×10−3	−2.53	β-2-glycoprotein 1	Apolipoprotein
IGG2B_RAT	2	6.88×10−3	−2.56	Ig γ-2B chain C region
PABP1_RAT	7 (1)	9.54×10−5	−2.77	Polyadenylate-binding protein 1	Transcription factor
SELS_RAT	3 (1)	5.32×10−3	−2.78	Selenoprotein S
KACA_RAT	1	3.62×10−5	−2.87	Ig κ chain C region, A allele
PPIB_RAT	3 (1)	0.02	−2.88	Peptidyl-prolyl cis-trans isomerase B	Isomerase
P06399	36 (10)	3.00×10−6	−2.88	Fibrinogen α chain
HSDL2_RAT	6 (1)	7.17×10−3	−2.9	Hydroxysteroid dehydrogenase-like protein 2	Dehydrogenase
DJC14_RAT	5 (2)	5.49×10−4	−2.98	Dnaj homolog	Chaperone
C4BPA_RAT	6 (3)	8.39×10−3	−3.02	C4b-binding protein α chain	Apolipoprotein
EXOC8_RAT	6 (1)	2.70×10−3	−3.09	Exocyst complex component 8
GDIB_RAT	3 (1)	1.76×10−4	−3.12	Rab GDP dissociation inhibitor β	Acyltransferase
NDUA9_RAT	3 (2)	6.17×10−4	−3.2	NADH dehydrogenase [ubiquinone] 1 α subcomplex subunit 9	Dehydrogenase
MVP_RAT	4 (2)	1.37×10−3	−3.26	Major vault protein	Ribonucleoprotein
S10A3_RAT	1	1.41×10−3	−3.28	Protein S100-A3	Calmodulin
HBB2_RAT	5 (1)	7.25×10−3	−3.58	Hemoglobin subunit β-2
FIBB_RAT	10 (6)	1.68×10−4	−3.75	Fibrinogen β chain	Signaling molecule
CEP41_RAT	4 (1)	4.12×10−4	−3.9	Centrosomal protein of 41 kDa
AT5F1_RAT	3 (1)	0.01	−3.93	ATP synthase subunit b, mitochondrial
GRM4_RAT	5 (2)	6.43×10−5	−4.01	Metabotropic glutamate receptor 4	G-protein coupled receptor
PRELP_RAT	4 (1)	1.31×10−3	−4.03	Prolargin	Extracellular matrix protein
FIBG_RAT	8 (4)	8.81×10−5	−4.18	Fibrinogen γ chain OS	Signaling molecule
IGG2A_RAT	4 (1)	2.06×10−3	−4.76	Ig γ-2A chain C region
HEMO_RAT	6 (2)	1.10×10−3	−4.84	Hemopexin	Transfer/carrier protein
LSG1_RAT	4 (1)	5.76×10−6	−4.84	Large subunit GTPase 1 homolog	Signaling molecule
ZBT38_RAT	11 (2)	1.86×10−3	−5.56	Zinc finger and BTB domain-containing protein 38	KRAB box transcription factor
RL10A_RAT	5 (1)	3.82×10−4	−5.64	60S ribosomal protein L10a	Ribosomal protein
PGS2_RAT	4 (1)	6.25×10−6	−5.7	Decorin	Extracellular matrix protein
KNT1_RAT	3 (1)	1.71×10−3	−5.96	T-kininogen 1
IGHG1_RAT	3 (1)	5.69×10−5	−6.37	Ig γ-1 chain C region
PTGIS_RAT	9 (3)	2.05×10−5	−6.76	Prostacyclin synthase	Oxidoreductase
CAC1D_RAT	7 (1)	3.56×10−3	−7.46	Voltage-dependent L-type calcium channel subunit α-1D	Voltage-gated calcium channel
ECI1_RAT	4 (1)	0.04	9.73	Enoyl-CoA ∆ isomerase 1	Acetyltransferase
KNT2_RAT	3 (1)	1.41×10−4	−16.47	T-kininogen 2
RS13_RAT	2 (1)	1.04×10−3	−23.58	40S ribosomal protein S13	Ribosomal protein
SPRY4_RAT	3 (1)	0.04	−28.28	Sprydomain-containing protein 4
LEG3_RAT	2 (1)	6.19×10−6	−36.14	Galectin-3	Signaling molecule
PRP19_RAT	3 (1)	0.02	−68.84	Pre-mRNA-processing factor 19	mRNA splicing factor
HD_RAT	17 (1)	5.69×10−3	−366.94	Huntingtin, subfamily C member 14

^aControl vs. 14th day group. Control group, operation with no occlusion (untreated); 14th day group, tissues were taken from rats 14 days following surgical procedures. The numbers in brackets represent the number of peptides involved in the quantitative analysis.

Table III.

Dynamic changes in differential protein expression in cardiac tissues among the control, 1st and 14th day groups.

Accession	Description	Fold changea	P-valuea	Fold changeb	P-valueb	Fold changec	P-valuec	Function
MYH7_RAT	Myosin-7	−1.01	2.15×10−5	−2.48	9.06×10−6	2.45	1.05×10−5	G-protein modulator
GELS_RAT	Gelsolin	−3.92	1.70×10−4	−1.81	1.50×10−5	−2.16	4.40×10−6	Non-motor actin binding protein, calcium-binding protein
CAC1D_RAT	Cav1.3	−7.09	3.94×10−3	−7.46	3.56×10−3	1.05	1.25×10−3	Voltage-gated calcium channel
VTDB_RAT	VDBP	−11.77	0.01	1.23	0.01	−13.65	8.10×10−4

^aControl vs. 1st day group

^bControl vs. 14th day group

^c14th day vs. 1st day. Cav1.3, voltage-dependent L-type calcium channel subunit α-1D; VDBP, vitamin D-binding protein; control group, operation with no occlusion (untreated); 1st day group, tissues were taken from rats 1 day following surgical procedures; 14th day group, tissues were taken from rats 14 days following surgical procedures.

Verification of protein expression by western blotting

The four dynamically altered proteins during the development of advanced heart failure were associated with a number of biological processes (Table III), thus their expression in myocardial tissues was verified by western blotting (Fig. 2). Consistent with the results of LTQ OrbiTrap, the expression of Myosin-7 was significantly upregulated on the 14th day post-MI with an unnoticeable alteration on the 1st day (Fig. 2A and B). The expression of VDBP was markedly upregulated on the 1st day post-MI (Fig. 2A and D) and the expression of Cav1.3 was significantly upregulated on the 14th day post-MI (Fig. 2A and E). The upregulation of Gelsolin on the 1st day post-MI was not observed by western blotting however, a marked upregulation was observed on the 14th day (Fig. 2A and C). These results suggest that the present proteomics results are relatively reliable.

Figure 2.

Western blot analysis to validate the alterations in the selected proteins identified by proteomic analysis. (A) Cell lysates were extracted from the left ventricle of untreated (control), 1st day post-MI and 14th day post-MI rats and analyzed by western blotting prior to quantification of (B) Myosin-7, (C) Gelsolin, (D) VDBP and (E) Cav1.3 protein expression. GAPDH was used to normalize expression levels. All experiments were performed at least twice. Data are presented as the mean ± the standard deviation. **P<0.01. VDBP, vitamin D binding protein; Cav1.3, voltage-dependent L-type calcium channel subunit α1D; MI, myocardial infarction; control group, operation with no occlusion (untreated); 1st day group, tissues were taken from rats 1 day following surgical procedures; 14th day group, tissues were taken from rats 14 days following surgical procedures.

Verification of protein expression by immunohistochemistry

The present study further verified the aforementioned results via immunohistochemistry in the myocardial tissue at different time points post-MI. As presented in Fig. 3, Gelsolin, Myosin-7 and Cav1.3 were observed in the cytoplasm and nucleus of myocardial cells, and VDBP was highly expressed in the cell membrane. A similar expression profile for the four proteins during the progression of advanced heart failure was additionally observed.

Figure 3.

Immunohistochemistry validations of the alterations in the selected proteins identified by proteomic analysis. Myocardial tissues from untreated (control), 1st day post-MI and 14th day post-MI rats were embedded in conventional paraffin and the expression of Myosin-7, VDBP, Gelsolin and Cav1.3 were detected by immunohistochemistry staining using the appropriate antibodies (magnification, ×400). VDBP, vitamin D binding protein; Cav1.3, voltage-dependent L-type calcium channel subunit α1D; MI, myocardial infarction; control group, operation with no occlusion (untreated); 1st day group, tissues were taken from rats 1 day following surgical procedures; 14th day group, tissues were taken from rats 14 days following surgical procedures.

Discussion

In the present study, quantitative proteomics based on LTQ OrbiTrap technology was used to evaluate differential protein expression during the development of heart failure post-MI in myocardial tissues. According to the PANTHER classification, a number of key enzymes in energy metabolism, including succinyl-CoA ligase (ADP/GDP-forming) subunit α, isocitrate dehydrogenase (nicotinamide adenine dinucleotide) subunit α, fumarate hydratase, aconitate hydratase, enoyl-CoA hydratase, enoyl-CoA ∆ isomerase 1, malate dehydrogenase, pyruvate dehydrogenase E1 component subunit α, long-chain specific acyl-CoA dehydrogenase, very long-chain specific acyl-CoA dehydrogenase, carnitine O-acetyltransferase, carnitine O-palmitoyl transferase 2, creatine kinase S-type and rhosphoglycerate kinase 1, were downregulated on the 1st and 14th day following MI when compared with the control group, which indicated that in the early and end stages of heart failure, the process of glycolysis and fatty acid β-oxidation are significantly decreased. Carnitine-palmitoyl transferase I (CPT1) is a rate-limiting enzyme mediating the mitochondrial uptake of fatty acid. It locates to the mitochondrial outer membrane to form fatty acylcarnitine, which catalyzes the conversion of long-chain acyl CoA to long-chain acylcarnitine. CPT2, located on the mitochondrial inner membrane, converts acylcarnitine back to long-chain acyl CoA, releasing carnitine (13). Enoyl-CoA hydratase and acyl CoA dehydrogenase catalyze the rate-limiting step in mitochondrial fatty acid β-oxidation (14).

The majority of the previous, relevant studies demonstrated a pronounced decrease in the protein levels of various FFA β-oxidation enzymes in heart failure models, including human dilated cardiomyopathy (6), canine tachycardia induced heart failure (15,16), rat aortic banding model (17) and rat chronic coronary ligation model (18). The decrease of FFA β-oxidation enzymes at the mRNA level was additionally reported in explanted hearts (19), dogs with end-stage tachycardia-induced heart failure (20) and dogs with microembolization-induced heart failure (21). In addition, mRNA of the key enzymes involved in fatty acid uptake and FFA β-oxidation were decreased to a greater extent compared with their proteins and enzymatic activities, in the end stages of heart failure (22). It has been reported that peroxisome proliferator-activated receptor γ coactivator-1α (23), estrogen-related receptor α (20), peroxisome proliferator-activated receptor-α (21,24) and retinoid X receptor α (25) may regulate the mRNA expression of genes involved in the mitochondrial fatty acid metabolism pathway in human, mouse, rat and dog heart failure models (20,23). Notably, in addition to carbohydrates and lipids, other metabolites, including certain amino acids and aldehydes, may influence energy status. Therefore, the defects in energy metabolism and decrease in cardiac muscle contractions are important factors in heart failure post-MI.

During systole, the opening of the L-type Ca²⁺ channel (LTCC) triggers sarcoplasmic reticulum (SR) Ca²⁺ release via the ryanodine-2 (RyR2) channels, and the SR Ca²⁺ reuptake is conducted by the SR Ca²⁺ ATPase (SERCA). Conversely, the sodium-calcium exchanger (NCX) extrudes Ca²⁺ from the cardiomyocyte to maintain a steady-state condition. The [Ca²⁺]i transient is conducted by sarcolemmal Ca²⁺ channels, which results in Ca²⁺ flux released from the SR via RyR2 channels. This Ca²⁺-induced Ca²⁺ release (CICR) is regulated by LTCC, which is localized to T-tubuli organization. The amplitude of the [Ca²⁺]i transient is dependent on the SR Ca²⁺ content. The diastolic Ca²⁺ concentration is regulated by the [Ca²⁺]i transient decline, which is primarily due to SR Ca²⁺ reuptake through SERCA and extrusion of Ca²⁺ via the NCX. Calcium ion transport is abnormal in heart failure due to the increased diastolic Ca²⁺ levels, reduced Ca²⁺ sensitivity of myofilaments and decreased Ca²⁺ reuptake, which results in a diastolic Ca²⁺ overload (26–28).

In the present study, two proteins involved in calcium ion transport, Gelsolin and Cav1.3, were upregulated in the rat model of heart failure. Gelsolin is a widely-distributed calcium-regulated actin-binding protein which mediates cell motility, ion channel regulation, signal transduction (29) and multiple cytoskeletal remodeling (30). In addition, gelsolin has anti-apoptotic and pro-apoptotic functions (29). A previous study demonstrated with a post-MI model, that it is highly expressed in animal and human hearts and that it is associated with the progression of heart failure following MI, suggesting that gelsolin may serve an important role in cardiac remodeling post-MI (30). Li et al (31) used gelsolin-null mice and wild-type littermates to clarify the role of gelsolin in heart failure and the mechanism for gelsolin-stimulated apoptosis. The group revealed that a deficiency in gelsolin protects the heart post-MI. This protection is due in part, to the absence of gelsolin-mediated apoptosis following MI. Gelsolin is cleaved by caspase-3 between residues Asp352 and Gly353, and the N-terminal gelsolin fragment may induce apoptosis. Therefore, gelsolin acts as actin in a Ca²⁺-independent manner and it may promote morphological alterations during apoptosis, indicating that gelsolin facilitates MI-induced cardiomyocyte apoptosis. The results of the present study are in agreement with the findings of Li et al (31) as the gelsolin protein was upregulated in the 1st and 14th day groups post-MI.

Cav1.3 (α1D) subunit (D-LTCC) is a component of LTCCs, which are vital for Ca²⁺ influx and are responsible for Ca²⁺ entry into cardiomyocytes during action potentials (32). Cav1.3 Ca²⁺ channels are highly expressed in cardiac pacemaking tissues [sinoatrial (SA) and atrioventricular nodes], and serve an important role in the spontaneous diastolic depolarization and pace making activities within SA node cells (33). Zhang et al (33) used a Cav1.3-null mutant mouse to illustrate that Cav1.3 Ca²⁺ channels were expressed in mouse atrial, however not ventricular tissues. The present study demonstrated that during the process of heart failure post-MI, the expression of Cav1.3 was upregulated in the left ventricular muscle. Therefore, it is possible that in the acute phase of heart failure, the β-adrenaline receptor is activated to trigger the opening of the LTCC and thus induces the influx of Ca²⁺, which in turn activates Ca²⁺ released from the SR.

Petrone et al (34) randomly selected 464 cases of heart failure and 464 controls to examine the expression of VDBP and revealed that there was no significant association between plasma levels of VDBP and risk of heart failure. In the present study, VDBP was significantly upregulated on the 1st day post-MI, then expression gradually declined with the progression of the disease. VDBP is an acute phase reactant (35) and its expression levels are upregulated in the acute phase of inflammation (36). VDBP expression may be increased by the pro-inflammatory cytokine interleukin-6 (37). In addition, this protein may associate with inflammatory cell surfaces (37). VDBP is a multifunctional transport protein for vitamin D metabolites (38), as vitamin D metabolism serves an important role in the maintenance of calcium homeostasis (39). VDBP binds to fatty acids and actin, preventing their polymerization, which may be detrimental in the circulatory system. VDBP may exert immune functions by inhibiting the production of 1,2,5(OH)₂D₃ in T-cells (40). It has been reported that ~85–90% of 2,5(OH)D₃ and 1,2,5(OH)₂D₃ in the circulation is bound to VDBP (41,42). Haddad et al (43) reported that serum VDBP does not decrease during vitamin D deficiency. Therefore, VDBP may protect against vitamin D deficiency, and it is fundamental for vitamin D dynamic homeostasis, as demonstrated in VDBP-null mice (39).

Vitamin D serves a major role in cardiac function by suppressing the parathyroid hormone, inhibiting renin, upregulating vascular endothelial growth factor and modulating calcium influx. Previous studies in animals (44,45) have revealed the association between vitamin D and the cardiovascular system. Rats with experimentally induced vitamin D deficiency have been observed to develop heart failure with hypertension and cardiomegaly (46). Pilz et al (47) demonstrated the association between vitamin D deficiency and left ventricular hypertrophy. The group identified a negative correlation between 25-hydroxy vitamin D levels and the impairment of left ventricular function in a cross-sectional study of patients with coronary angiography (47).

Myosin-7, also known as cardiac β-myosin heavy chain, is a myocardial growth fetal gene that is associated with ventricular systolic function and remodeling ventricular pathological hypertrophy (48). In ventricular pathological hypertrophy and heart failure, contractile proteins and sarcomeres increase via the activation of myocardial growth fetal genes, including Myosin-7 (49). Abraham et al (50) studied the genes associated with phenotypic modulation in idiopathic dilated cardiomyopathy, and observed an increase in the mRNA expression of Myosin-7. In other models of ventricular pathological hypertrophy and heart failure, a coordinated decrease in α-MyHC mRNA and increase in Myosin-7 mRNA were associated with a reduction in shortening velocity (12). In addition, Myosin-7 has a lower myofibrillar Ca²⁺-stimulated ATPase activity than the α-isoform, resulting in a reduction in shortening velocity and myocardial systolic function (12). Therefore, it has become apparent that intracellular Ca²⁺ homeostasis is vital for myocardial contractility (7,9,10), and the capacity of the cardiac muscle to produce contractile force is dependent upon myofibrillar Ca²⁺-stimulated ATPase activity (51). Therefore, the relative amount of α- and β-myosin heavy chain isoforms determines myosin ATPase activity (52). Machackova et al (53) investigated the association between the alterations in gene expression and the heart failure phenotype. It was demonstrated that the β-myosin heavy chain proportion increased from 6.3 to 77.7% of total myosin heavy chain, whereas the α-myosin heavy chain proportion decreased from 93.7 to 22.3% in post-MI heart failure.

In conclusion, the present proteomics study demonstrated that the profile of proteins associated with metabolic remodeling, calcium regulation and contractile function was altered in the presence of post-MI heart failure. At different time points (the 1st and 14th day post-MI), there are dynamic alterations in differential protein expression. Myosin-7, Gelsolin, VDBP and Cav1.3 were upregulated with the development of heart failure and, to the best of our knowledge, this is the first proteomic analysis of Myosin-7, Gelsolin, Cav1.3 and VDBP in a post-MI rat model using LTQ OrbiTrap. Therefore, these results may provide a comprehensive insight into the underlying mechanisms of the development of heart failure.