Abstract
The IL-2/IL-2R pathway is implicated in type 1 diabetes (T1D). While its role in regulatory T cell (Treg) biology is well characterized, mechanisms that influence IL-2 responses in effector T cells (Teff) are less well understood. We compared IL-2 responses in 95 healthy control and 98 T1D subjects. In T1D, low IL-2 responsiveness was most pronounced in memory Teff. Unlike Treg, CD25 expression did not influence the Teff responses. Reduced IL-2 responses in memory Teff were not rescued by resting, remained lower after activation and proliferation, and were absent in type 2 diabetes. Comparing basal IL-2 responses in resting versus activated cells, memory Teff displayed lower, but more sustained, responses to IL-2 overtime. These results suggest that T1D–associated defects in the Teff compartment are due to intrinsic factors related to activation. Evaluation of both Teff and Treg IL-2R signaling defects in T1D subjects may inform selection of therapies.
Keywords: IL-2, type 1 diabetes, CD4 T cell, signaling, activation
1. Introduction
Type 1 diabetes (T1D) is a complex autoimmune disease caused by the selective destruction of insulin producing beta cells in the pancreatic islet. This immune-mediated destruction of beta cells ultimately leads to a life-long dependence on exogenous insulin treatment. While the etiology of T1D is unknown, it is clear that both genetic and environmental factors contribute to disease susceptibility and progression. Beta-cell specific T cells are known to play a key role in T1D, yet there is also strong evidence that systemic immunological defects impact T1D pathogenesis. Gaining a better understanding of the character of the global immune response may lead to discovery of new areas for disease prevention and intervention.
Low dose IL-2 therapy augments the frequency of regulatory CD4 T cells (Treg), an IL-2 dependent cell-type that constitutively expresses high levels of CD25. There is great interest in using low dose IL-2 therapy to boost Tregs in T1D given that genetic variants in the IL-2/IL-2R Pathway are associated with T1D, and defects in both IL-2R signaling and Treg stability have been observed in T1D in humans and mouse models [1–5]. Beneficial clinical responses have been observed in low dose IL-2 trials in graft versus host disease, vasculitis, lupus and alopecia patients [6]. In these clinical settings, IL-2 therapy clearly augments Treg, but may also impact other cell types [2]. In a recent dose-escalation Phase I adaptive trial in T1D, a range of IL-2 doses that increase Treg frequency in peripheral blood was identified [7]. However, in the same trial, other cell types also responded to IL-2 including Teff at all doses tested and there was significant heterogeneity across subjects. This finding confirms initial trials with IL-2 therapy in T1D that suggest there is a narrow dosing window that varies across subjects to achieve Treg- specifc tolerogenic effects [8, 9]. To this point, it is imperative to better understand patient heterogeneity and underlying mechanisms of disease by clearly defining the degree, cell source, and cause of variability in IL-2/IL-2R signaling.
It remains to be determined to what degree IL-2/IL-2R signaling variability is due to differences in the intrinsic or extrinsic regulation of this pathway. Intrinsically in humans, genome wide association studies have identified multiple T1D–associated single nucleotide polymorphisms (SNPs) that are located in genes (IL-2, IL2RA, and PTPN2) that encode proteins in the IL-2/IL-2R signaling pathway [3,4]. Yet, this does not explain low IL-2 response in all subjects. IL-2R signaling is tuned at multiple levels with expression level of CD25 being key. Other intrinsic factors including signaling molecules and miRNA have been shown to control signaling in model systems [10, 11]. Extrinsically, metabolic factors and secreted receptors [12–14] regulate IL-2R signaling in other disease settings. In this study, we examine IL-2 responsiveness in 98 T1D subjects and 95 healthy controls and explore underlying mechanisms in Teff Our results demonstrate that disease impacts IL-2/IL-2R signaling most prominently in the CD4 Teff compartment. Furthermore, these effects are most likely acquired and intrinsic given that they are present in memory (but not naive) cells, are not present in type 2 diabetic (T2D) subjects, persist following activation and proliferation, and are altered by activation state.
2. Materials and Methods
2.1 Human subjects and sample handling
Peripheral blood mononuclear cells (PBMC) were collected from subjects enrolled in the Benaroya Research Institute (BRI) Immune Mediated Disease Registry and Repository. Written informed consent was obtained from all subjects according to IRB approved protocols at BRI, Seattle Washington, USA. Age and gender matched healthy controls were selected for each experiment based on lack of personal or family history of autoimmunity or asthma. Control and disease subjects were included in daily experiments to avoid batch effects.
2.2 Flow cytometric analysis
Thawed PBMC were rested for 1 hour at 37°C in serum free X-vivo media prior to stimulation with 25 IU/mL IL-2 for 10 minutes, consistent with a dose previously used to show differences in both Treg and Teff between control and T1D subjects [15, 16]. Stains and analyses were performed as described previously [15, 16]. Phosphorylated Signal of transducer and activator transcription 5 (pSTAT5) protein was detected in cell types identified with monoclonal antibodies (Table S1). To accurately measure IL-2 responses in CD25hi Treg, cells, an independent stain of CD25, FOXP3 and CD127 was used to determine percentage of CD25hi cells composed of >95% FOXP3 and CD127lo. This percentage of CD25hi was then applied to Treg analysis of pSTAT5 on a per subject basis as shown in Fig S1. For selected experiments, cells were stained for CD71 and HLA-DR concurrent with the IL-2 stimulation. To permit direct comparisons between samples acquired across days, instrument standardization was performed using 8 peak rainbow calibration beads (Spherotech, Lake Forest, IL) adjusting PMT voltages so that 7th peak mean fluorescent intensities for each parameter were consistent. Data were acquired using an LSR-Fortessa (BD Biosciences) with FACS Diva software and analyzed with FlowJo software version 9.5 (Tree Star, Ashland, OR). Samples were eliminated from analysis if viability upon thaw was <70%. Populations with less than 500 events were eliminated from analysis.
2.3 Genotyping
IL2RArs12722495, IL2RArs2104286, IL2RArs11594656, PTPN2rs478582 and PTPN2rs1893217 were genotyped as described previously [16].
2.4 In vitro activation cultures
Memory CD4 T cells were selected using no-touch Miltenyi memory CD4 T cell selection kits (mean purity of 97%; range 92–100). Memory CD4 T cells were then depleted of CD25hi cells prior to activation using positive CD25 Miltenyi MACS selection as performed previously [17, 18]. Cells were activated half maximally with plate-bound anti-CD3 (1 µg/mL, clone UCHT1) and soluble anti-CD28 (0.5 µg/mL clone CD28.2). Subjects were excluded if <10% of cells were activated by day 3 (1 control, 2 T1D). For some experiments, cells were labelled with CFSE prior to culture as per manufacturer’s instructions (Invitrogen).
2.5 Statistics
A two-tailed t-test or Mann Whitney test was used to compare two groups depending on distribution of the data. For comparisons of multiple groups, Kruskal-Wallis test was performed. All statistical calculations were performed using GraphPad Prism v6.05. Comparisons with p <0.05 were considered significantly different.
3. Results and Discussion
3.1 Attenuated IL-2 responses in T1D are prominent in memory CD4 Teff
Heterogeneity of subjects and cell types can confound some immunological findings in smaller studies. To better understand this heterogeneity, we compared IL-2 responses in T cell subsets in a large number (98 T1D and 95 healthy control) of subjects matched for age, gender and ethnicity (Table 1). We chose a dose of IL-2 known to elicit differences in all T cell subsets, and that is not driven exclusively by IL-2 availability and CD25 expression level. Importantly, this enabled measurement of IL-2 responsiveness in CD25hi Treg and CD25lo Teff, both of which are activated even with low doses of IL-2 in vivo [7]. This IL-2 response assay was highly reproducible (Fig. 1A, Fig. S1). We were able to perform post-hoc disease and selected genetic analysis due to substantial variation in subject characteristics including age of diagnosis, disease duration, and distribution of selected SNPs in the IL-2/IL-2R pathway.
Table 1.
Cohort | Controls | T1D | T-mid1 | T-lo1 |
---|---|---|---|---|
n | 95 | 98 | 6 | 6 |
|
||||
Age (yrs.); mean ± SD (range) | 32.8 ± 7.5 (18–49) | 32.6 ± 7.6 (18–48) | 29.5 ± 8.0 (18–38) | 28.6 ± 3.5 (24–33) |
|
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Gender (% male) | 48% | 46% | 66% | 66% |
|
||||
Caucasian/white (%) | 100 | 100 | 100 | 100 |
|
||||
Disease Duration (yrs.); mean ± SD (range) | NA | 13.6 ± 10.9 | 8.6 ± 5.3 | 7.0 ± 2.0 |
(0.1–39) | (1.4–16.2) | (0.3–19.4) | ||
|
||||
Age of diagnosis (yrs.); mean ± SD (range) | NA | 19.3 ± 10.1 | 19.6 ± 4.8 | 22.2 ± 6.3 |
(0.9–46) | (11–27) | (13–31) | ||
|
||||
IL-2 associated Genetics2 | ||||
|
||||
IL2RArs2104286 (A, risk) | 0.764 | 0.799 | 1.00 | 1.00 |
|
||||
IL2RArs11594656 (T, risk) | 0.723 | 0.758 | 0.833 | 0.666 |
|
||||
PTPN2rs1893217 (C, risk) | 0.163 | 0.180 | 0.00 | 0.00 |
|
||||
PTPN2rs478582 (T, risk) | 0.544 | 0.611 | 0.500 | 0.500 |
|
T-mid and T-lo cohorts were pre-selected as T1D subjects with IL-2 responses comparable to controls (T-mid) and <2 SD of controls (T-lo). To eliminate the impact of alleles known to alter IL-2R signaling, IL2RArs12722495, IL2RArs2104286, and PTPN2rs1893217 were held constant.
Allele frequencies for each risk allele are shown. IL2RArs12722495 was also typed. However, the risk allele was only detected at an allele frequency of 0.082 in controls and 0.061 in T1D, limiting accurate analysis.
In our large experimental cohorts, we found reduced IL-2R signaling in memory, but not naïve, Treg of T1D subjects as compared to controls (Fig. 1B). Decreased memory Treg response is consistent with our previous findings using smaller cohorts [15, 16], and in the study by Yang et al. using a lower in vitro IL-2 dose with extended kinetics [19]. Another study with a smaller cohort did not find such differences [20], and a study in autoantibody positive pre-T1D only found differences linked to CD25 genotype, but not disease [21]. While in previous work we functionally linked reduced IL-2 responses in T1D to reduced FOXP3 persistence and induction [15], Marwaha linked IL-17 production in memory FOXP3+ cells with a CD25 risk allele [21], and Yang et al. found differences in the proportion of Treg subsets when focusing on IL-2hi and lo outliers [19]. Collectively, studies to date demonstrate that subtle reductions in IL-2R signaling in naïve Treg of selected subjects and memory Treg of T1D subjects overall leadto reduced Treg stability and function. This is also consistent with subtle changes in steady-state signaling that result in functional consequences in potentially pathogenic T cells through altered balances in transcription factors and epigenetic status of STAT5-dependent genes [22–24].
Using the same subjects and assay, we next asked whether reduced IL-2 responses applied across cell types. Analyzing response to IL-2 in the memory CD4 Teff compartment, we conclusively found that in T1D IL-2 signaling was significantly reduced as compared to controls (Fig. 1C). Decreased memory Teff IL-2 responses are consistent with our previous findings using smaller cohorts [15, 16]. Other studies either did not compare Treg and Teff responses in the same subjects [21, 25], or used assays optimized for detecting IL-2 response in Treg driven by limiting amounts of IL-2 [19], or smaller cohorts size [20].
3.2 Low responses to IL-2 in memory Teff of T1D are independent of known T1D-associated genetic risk alleles
One cause of variability across cell types and subjects may be genetics. Thus, we analyzed the role of selected SNPs in the IL-2/IL-2R pathway previously associated with T1D and compared these to disease specific differences in IL-2 responsiveness. We detected association of PTPN2rs1893217 with reduced IL-2 response in memory Teff from control subjects, consistent with previous results [16, 19, 26] and association of PTPN2rs478582 with diminished IL-2 responsiveness only in naïve Treg from T1D subjects as observed by Yang et.al. [19] (data not shown). Neither of the PTPN2 SNPs completely explained the overall reduced IL-2R signaling observed in memory Treg and Teff of T1D. When restricting our analysis to individuals held constant for risk alleles at PTPN2 and IL2RA, we found reduced response to IL-2 in memory Teff of T1D compared with control subjects (Fig. 1D) suggesting that disease drives reduced IL- 2 responses in memory Teff of T1D through extrinsic factors, intrinsic factors and/or unknown genetics, or epigenetic changes.
3.3 CD25 expression level does not influence low response to IL-2 in memory CD4 Teff of T1D
Expression level of CD25 is known to be one of the key determinants of IL-2 response. We compared responses to IL-2 in different CD4 T cell populations of T1D to determine whether CD25 expression correlated with IL-2 responsesin Teff cells. As expected, naïve and memory Treg responses in the same T1D subjects were significantly correlated (Fig. 2A), with lower IL-2 responders in the naïve Treg subset associating with lower CD25 expression levels. These data support a strong role for CD25 expression level in each individual in determining Treg IL-2 responses in T1D, as shown by others [19, 27, 28] and in children with T1D [25]. By comparison, IL-2 responsiveness in memory Treg was not as well correlated with memory Teff within the same subject (Fig. 2B). We found no significant difference in CD25 expression between high and low IL-2 responders in the memory Teff compartment, and other studies have not found differences in expression of the low affinity IL-2 receptor (CD122) between controls and T1D [10, 15]. This suggests that different factors may influence IL-2 responses in Treg versus Teff, resulting in a more pronounced effect in Teff observed here.. Since less is known about reduced IL-2 responses in Teff, , and low IL-2 responses in Teff are associated with differential effector responses [23, 29], we subsequently focused on this population to understand underlying mechanisms of reduced IL-2 signaling in T1D.
3.4 Extrinsic factors in vivo do not attenuate IL-2 response in memory CD4 Teff of T1D
To determine whether extrinsic in vivo factors alter IL-2R signaling, we took three independent approaches. We first compared clinical metabolic measures of T1D subjects with IL-2 responses and found no correlations between IL-2 responses and glucose or hemoglobin A1c levels at time of draw (Fig. 3A, B). We also did not find a correlation with duration of disease or age at diagnosis (Fig. S2) in adult T1D subjects. Next, to test whether overt metabolic dysfunction alters IL-2 response, we assayed IL-2 responses in type 2 diabetic (T2D). Responses to IL-2 were not reduced in memory CD4 Teff or Treg of T2D subjects compared with control subjects (Fig. 3C). Lastly, we isolated fresh cells from PBMC and asked whether IL-2 signaling increased when Teff cells were removed from exposure to the in vivo microenvironment. Resting cells overnight in fresh media did not restore IL-2R signaling in T1D (Fig. 3D) even though extrinsically-driven lipid raft-associated defects in signaling of T cells from SLE subjects can be restored by incubation in fresh media [30],). Together, these data suggest that extrinsic factors in vivo do not play a dominant role in reducing IL-2R signaling in Teff from T1D. Instead, intrinsic factors are likely involved, consistent with our observation that IL-2 signaling is constant over-time in the same subject [15, 19]; this suggests a stable phenotype as opposed to transient alterations in signaling caused by in vivo oscillations in inflammatory or metabolic state.
3.5 In vitro activation through the T cell receptor enhances low IL-2 response
We next designed in vitro experiments to query possible intrinsic factors that may alter IL-2R signaling in T1D. We first compared IL-2 responses before and after in vitro activation comparing controls and T1D subjects held constant for variants in the IL-2R signaling pathway to eliminate known genetic influences. Memory CD4 Teff cells were activated with half- maximal TCR stimulation and response to IL-2 was measured when cells came back to rest at day 10 (Fig 4A). The frequency of activated memory CD4 Teff cells was similar between control and T1D at day 3 and day 10 as measured by CD25 expression (Fig. S3). Response to IL-2, as measured by pSTAT5, decreased with activation in both controls and T1D (Fig. 4A) suggesting that IL-2 responses are influenced by activation. Importantly, the difference between T1D and control T cells was evident both at the initiation of culture and after 10 days when cells returned to rest. Thus, half-maximal T cell receptor activation reduced IL-2 responses in all subjects, with a sub-group of T1D subjects having more profound loss of IL-2 responses both prior to and after activation.
To determine whether low IL-2 signaling was due to differences in proliferation or outgrowth of non-responding cells, we CFSE labelled the memory CD4 Teff cells. The number of cell divisions by day 10 did not significantly differ between control and T1D subjects, nor did the frequency of undivided cells (data not shown). Following activation and proliferation, response to IL-2 was lower in Teff cells from T1D than controls in both the undivided and divided populations (Fig. 4B). Importantly, CD4 memory Teff did not lack the ability to respond to IL-2 since pSTAT5 of T1D subjects could be restored to comparable levels as controls when strong stimulation through the T-cell receptor or high doses of IL-2 were used (Fig. 4C). Rescue with high dose IL-2 is also consistent with the rescue of IL-2R signaling in vivo in recent onset T1D patients treated with rapamycin and IL-2 [24]. Thus, half-maximal activation through the TCR does not rescue IL-2 response in T1D, but instead, may augment it. This suggests that blunted IL-2 responsiveness may be an acquired, regulated phenotype consistent with diminished signaling in memory, but not naïve, T cells.
There exists, however, substantial heterogeneity in IL-2 responses across T1D subjects [19]. Thus, to more precisely test the hypothesis that reduced IL-2R signaling is intrinsic and acquired, we measured IL-2 response in memory CD4 T cells of subjects held constant for known risk alleles and defined by divergent IL-2 responses in prior assays: T-mid (T1D with pSTAT5 comparable to controls) and T-lo (T1D with pSTAT5 < 2 standard deviations below controls). Using this stratification, phenotypes were reproducible following isolation of memory Teff and measurement of IL-2 response on day 0 prior to culture (Fig. 4D). On day 10, the frequency and expression level of CD25 were similar (Fig S3), however responses to IL-2 remained markedly lower than controls only in T-lo subjects, but not T-mid subjects. Importantly, this was not due to overt metabolic differences since T cells from T2D subjects responded similarly to controls by day 10 of in vitro cultures (Fig. 4E). Together, these data suggest intrinsic factors related to activation likely influence basal IL-2 response, and the effect is more pronounced in T-lo subjects, but not T-mid consistent with heterogeneity of many T1D phenotypes [19, 31, 32].
3.6 Attenuation of IL-2 response is most profound in quiescent, not activated, memory CD4 Teff of T1D
To further explore the role of activation on basal IL-2 responses in memory CD4 Teff cells, we compared basal IL-2 responses in cells defined by the presence or absence of known activation markers. Recently in vivo activated memory CD4 T cells expressing HLA-DR or CD71 composed less than a quarter of all memory CD4 T cells and we did not find a significant difference in the frequency of expression of activation markers between cohorts (Fig. 5A). Thus, the majority of memory CD4 Teff cells display a resting basal phenotype. Consistent with previous data, responses to IL-2 were lower in the T-lo cohort as compared to controls in the resting cells (Fig. 5B). This resulted in a greater difference between responses to IL-2 in activated versus resting T cells in the T-lo cohort (Fig. 5C). To rule out the possibility that this was due to variation in CD25 expression, we co-stained cells with CD25 and found that the level of CD25 expression on resting memory CD4 T cells did not differ (Fig. S4).
3.7 Weaker, but more sustained activation is evident in memory CD4 Teff of T1D
We measured activation and IL-2 response kinetics overtime to better understand how activation in T-lo subjects may influence IL-2 response. The level of CD25 expression upon activation directly correlated with the level of pSTAT5 at day 3, and T-lo displayed lower responses than T-mid and control subjects (Fig. 6A). Nevertheless, the frequency of CD25+ cells was similar across all groups at day 3 (Fig. 6B), as was also seen in Fig. 4. Interestingly, the frequency of CD25+ cells was maintained longer (through day 6) only in T-lo subjects. By day 10, the frequency and expression level of CD25 were similar across all groups, however responses to IL-2 remained markedly lower only in T-lo subjects (Fig. 6B). Taken together, activation in vitro reveals kinetic differences in responses to IL-2 in T-lo subjects that implicate a lower, but more sustained activation resulting in a lower response to IL-2 at rest (day 0 and 10).
These results suggest IL-2 responsiveness is modulated through a regulated process that involves intrinsic factors in memory CD4 Teff of some T1D subjects. The specificity of diminished response to IL-2 offers clues to the underlying mechanisms controlling this phenotype. Reduced IL-2 signaling is present in Teff of T1D, but not multiple sclerosis [16]. Deficiencies in IL-2 signaling have also been observed in naive T cells of systemic lupus erythematosus patients [33], but not memory cells [16],. Thus, reduced IL-2 signaling is observed in some, but not all, autoimmune subjects.
Reduced IL-2 responses are also observed in some advanced cancer settings and in subjects chronically infected with hepatitis C [34–36] suggesting that this phenotype in Teff may be linked to chronic activation or differentiation state. Molecularly, this may be caused by unknown genetics, epigenetics, differentiation, or divergence in signaling pathways as has been seen in other settings [34, 36–38]. T cell receptor activation is known to modulate cytokine signaling [39, 40]. Enhanced negative feedback has been observed in T cells of HIV subjects in the MAPK pathway [41, 42]. Phosphatases, SOCS proteins, PIM kinases and microRNAs are all examples of inhibitors that can negatively regulate cytokine responses and are activated upon T cell receptor engagement [1, 35, 43, 44]. In fact, in some T1D subjects, we found that high expression of the inhibitor PTPN2 reduces basal IL-2R signaling [15]. Further array-based and functional experiments are required to reveal inhibitory mechanisms that may vary by subject, but have a similar underlying cause and outcome.
4 Conclusion
This comprehensive study expands our understanding of underlying mechanisms of reduced IL-2R signaling in a cell-type specific manner, underscores the heterogeneity across subjects and cell types, and highlights the predominance of acquired, disease-associated IL-2R signaling defects in the Teff compartment in T1D that may be linked to chronic activation or differentiation state. Together, these Treg and Teff IL-2 signaling defects could inform selection of therapies for an individual. For example, the preponderance of reduced IL-2 signaling in Teff of T1D may favor Th17 and follicular helper cell differentiation [23, 29] or impact activation induced cell death, and therefore may be best therapeutically targeted through alternative pathways alone or in combination with IL-2 based therapies. By comparison, subjects with higher IL-2 response in Treg may respond to Treg-selective IL-2 therapy alone.
Supplementary Material
Highlights.
Low response to IL-2 is most prominent in memory CD4 Teff of T1D subjects
Multiple factors influence T1D–associated low IL-2 response in Teff
Low, but sustained TCR activation correlates with low basal IL-2R signaling
Activation enhances low IL-2 responsiveness suggesting a regulated response
Acknowledgments
We are very grateful to the investigators and staff of the BRI Diabetes Clinical Research Program for subject recruitment, as well as the BRI Translational Research Clinical Core for sample processing and handling. We thank all members of the Human Immunophenotyping Core who helped with standardization and acquisition of flow cytometry data in the large cohorts of controls and T1D subjects. We thank Anne Hocking for review of the article and assistance with submission.
Grant Support
This work was supported by a JDRF Career Development Award 3-2012-205 to SAL, and NIH grants AI101990, AI083455, and DK097672 to JHB.
Abbreviations
- T1D
type 1 diabetes
- T2D
type 2 diabetes
- CTL
control
- Treg
regulatory T cell
- Tefff
effector T cell
- SNP
single nucleotide polymorphism
- pSTAT5
phosphorylated Signal Transducer and Activator of Transcription
- PBMC
peripheral blood mononuclear cells
- FDR
false discovery rate
Footnotes
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