TABLE 3 .

Virus sequences identified in pooled RNA-seq data from 179 patients positive for EBOV based on qRT-PCR and clinical diagnosis

Virus	Protein	% identity	Amino acid length	E value
EBOV	L protein	96.8	2,212	0.00E+0
GB-C	Polyprotein	99.1	328	1.50E−190
HHV-4	BALF2	100	100	1.9E−51
	LF2 protein	100	166	4.9E−91
	BALF5	98.8	172	4.4E−88
	BALF4	100	257	6.6E−142
	DNA polymerase catalytic subunit	99.2	131	2.3E−71
	BHRF1	100	121	7.4E-66
	BARF0	99.2	120	6.5E−62
	Early antigen D	100	118	2E−60
	gp110 precursor	100	95	1.3E−49
	A73 protein	100	94	6.1E−50
	LF1	98.9	92	1.1E−48
	Putative BHLF1 protein	98.7	75	4.8E−42
	BFRF1	100	71	4.1E−32
	BMRF2	100	68	7.6E−31
	dUTPase	98.5	68	3E−32
	BFRF2	100	67	4.2E−32
	LF3 protein	100	45	0.0000000000000002
	K15	100	37	0.00000000000056
HHV-5 (cytomegalovirus)	IRL4	100	107	3.1E−53
	IRL3	94.1	101	1.20E−46
	IRL7	100	82	1.60E−37
	RL5A	63.6	66	9.30E−15
	IRL5	55.1	69	3.50E−12
	UL109	68.1	47	2.10E−10
Hepatitis A virus	Polyprotein	100	91	5.5E−45
Hepatitis B virus	Polymerase	92.8	503	3.30E−278
Pepino mosaic virus	Replicase	99.4	163	4.60E−87
Sewage-associated gemycircularvirus-4	Replication-associated protein	100	105	3.60E−57
Rotavirus A	VP6	98.8	86	8.1E−41
	VP1	100	75	1.1E−33
	NSP3	169	251	1.5E−21
Papillomavirus	Minor structural protein- interacting protein	100	56	3.40E−24
	L2	97.2	72	1.50E−34
	Regulatory protein	98.5	67	5E−30
Torque Teno virus 20	Unnamed protein product	100	32	9.10E−9
Tobacco mosaic virus	Replicase	97.2	1,521	0.00E+0
	Capsid protein	100	102	7.2E−49
	126-kDa protein	99	314	2.30E−181
	Movement protein	97.4	268	8.60E−145