Abstract
Although the Xenopus immunoglobulin heavy chain locus is structurally and functionally similar to mammalian IgH loci, Xenopus antibodies are limited in heterogeneity, and they mature only slightly in affinity during immune responses. During the antibody response of isogenic frogs to DNP-KLH, mu and upsilon cDNA sequences using elements of the VH1 family were cloned, sequenced and compared with germline counterparts. There were zero to four mutations per sequence, mostly single base substitutions, in the framework and CDRs 1 and 2 of VH. No mutations were found in JH. Since the point mutation rate was only 4- to 7-fold lower than that calculated for mice, affinity maturation does not seem to be limited by mutant availability. Because of a relatively low ratio of replacement to silent mutations in the CDRs and a very high ratio of GC to AT base pairs altered by mutation, it is suggested that the problem results from the absence of an effective mechanism for selecting mutants, which in turn might be related to the absence of germinal centers in Xenopus.
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- Arkoosh M. R., Kaattari S. L. Development of immunological memory in rainbow trout (Oncorhynchus mykiss). I. An immunochemical and cellular analysis of the B cell response. Dev Comp Immunol. 1991 Fall;15(4):279–293. doi: 10.1016/0145-305x(91)90021-p. [DOI] [PubMed] [Google Scholar]
- Auffray C., Rougeon F. Purification of mouse immunoglobulin heavy-chain messenger RNAs from total myeloma tumor RNA. Eur J Biochem. 1980 Jun;107(2):303–314. doi: 10.1111/j.1432-1033.1980.tb06030.x. [DOI] [PubMed] [Google Scholar]
- Berek C., Griffiths G. M., Milstein C. Molecular events during maturation of the immune response to oxazolone. Nature. 1985 Aug 1;316(6027):412–418. doi: 10.1038/316412a0. [DOI] [PubMed] [Google Scholar]
- Berek C., Milstein C. Mutation drift and repertoire shift in the maturation of the immune response. Immunol Rev. 1987 Apr;96:23–41. doi: 10.1111/j.1600-065x.1987.tb00507.x. [DOI] [PubMed] [Google Scholar]
- Berek C., Milstein C. The dynamic nature of the antibody repertoire. Immunol Rev. 1988 Oct;105:5–26. doi: 10.1111/j.1600-065x.1988.tb00763.x. [DOI] [PubMed] [Google Scholar]
- Blomberg B., Bernard C. C., Du Pasquier L. In vitro evidence for T-B lymphocyte collaboration in the clawed toad, Xenopus. Eur J Immunol. 1980 Nov;10(11):869–876. doi: 10.1002/eji.1830101112. [DOI] [PubMed] [Google Scholar]
- Brandt D. C., Griessen M., Du Pasquier L., Jaton J. C. Antibody diversity in amphibians: evidence for the inheritance of idiotypic specificities in isogenic Xenopus. Eur J Immunol. 1980 Oct;10(10):731–736. doi: 10.1002/eji.1830101002. [DOI] [PubMed] [Google Scholar]
- Brenner S., Milstein C. Origin of antibody variation. Nature. 1966 Jul 16;211(5046):242–243. doi: 10.1038/211242a0. [DOI] [PubMed] [Google Scholar]
- Du Pasquier L. Antibody diversity in lower vertebrates--why is it so restricted? Nature. 1982 Mar 25;296(5855):311–313. doi: 10.1038/296311a0. [DOI] [PubMed] [Google Scholar]
- Du Pasquier L., Blomberg B., Bernard C. C. Ontogeny of immunity in amphibians: changes in antibody repertoires and appearance of adult major histocompatibility antigens in Xenopus. Eur J Immunol. 1979 Nov;9(11):900–906. doi: 10.1002/eji.1830091112. [DOI] [PubMed] [Google Scholar]
- Du Pasquier L., Schwager J., Flajnik M. F. The immune system of Xenopus. Annu Rev Immunol. 1989;7:251–275. doi: 10.1146/annurev.iy.07.040189.001343. [DOI] [PubMed] [Google Scholar]
- Du Pasquier L., Schwager J. Immunoglobulin genes and B cell development in amphibians. Adv Exp Med Biol. 1991;292:1–9. doi: 10.1007/978-1-4684-5943-2_1. [DOI] [PubMed] [Google Scholar]
- Du Pasquier L., Wabl M. R. Antibody diversity in amphibians: inheritance of isoelectric focusing antibody patterns in isogenic frogs. Eur J Immunol. 1978 Jun;8(6):428–433. doi: 10.1002/eji.1830080611. [DOI] [PubMed] [Google Scholar]
- Feinberg A. P., Vogelstein B. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity. Anal Biochem. 1983 Jul 1;132(1):6–13. doi: 10.1016/0003-2697(83)90418-9. [DOI] [PubMed] [Google Scholar]
- French D. L., Laskov R., Scharff M. D. The role of somatic hypermutation in the generation of antibody diversity. Science. 1989 Jun 9;244(4909):1152–1157. doi: 10.1126/science.2658060. [DOI] [PubMed] [Google Scholar]
- Griffiths G. M., Berek C., Kaartinen M., Milstein C. Somatic mutation and the maturation of immune response to 2-phenyl oxazolone. Nature. 1984 Nov 15;312(5991):271–275. doi: 10.1038/312271a0. [DOI] [PubMed] [Google Scholar]
- Haire R. N., Amemiya C. T., Suzuki D., Litman G. W. Eleven distinct VH gene families and additional patterns of sequence variation suggest a high degree of immunoglobulin gene complexity in a lower vertebrate, Xenopus laevis. J Exp Med. 1990 May 1;171(5):1721–1737. doi: 10.1084/jem.171.5.1721. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Haire R. N., Ohta Y., Litman R. T., Amemiya C. T., Litman G. W. The genomic organization of immunoglobulin VH genes in Xenopus laevis shows evidence for interspersion of families. Nucleic Acids Res. 1991 Jun 11;19(11):3061–3066. doi: 10.1093/nar/19.11.3061. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hsu E., Du Pasquier L. Studies on Xenopus immunoglobulins using monoclonal antibodies. Mol Immunol. 1984 Apr;21(4):257–270. doi: 10.1016/0161-5890(84)90096-8. [DOI] [PubMed] [Google Scholar]
- Hsu E., Julius M. H., Du Pasquier L. Effector and regulator functions of splenic and thymic lymphocytes in the clawed toad Xenopus. Ann Immunol (Paris) 1983 Nov-Dec;134D(3):277–292. doi: 10.1016/s0769-2625(83)80022-1. [DOI] [PubMed] [Google Scholar]
- Hsu E., Lefkovits I., Flajnik M., Du Pasquier L. Light chain heterogeneity in the amphibian Xenopus. Mol Immunol. 1991 Sep;28(9):985–994. doi: 10.1016/0161-5890(91)90184-l. [DOI] [PubMed] [Google Scholar]
- Hsu E., Schwager J., Alt F. W. Evolution of immunoglobulin genes: VH families in the amphibian Xenopus. Proc Natl Acad Sci U S A. 1989 Oct;86(20):8010–8014. doi: 10.1073/pnas.86.20.8010. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jacob J., Kelsoe G., Rajewsky K., Weiss U. Intraclonal generation of antibody mutants in germinal centres. Nature. 1991 Dec 5;354(6352):389–392. doi: 10.1038/354389a0. [DOI] [PubMed] [Google Scholar]
- Jäck H. M., Wabl M. High rates of deletions in the constant region segment of the immunoglobulin mu gene. Proc Natl Acad Sci U S A. 1987 Jul;84(14):4934–4938. doi: 10.1073/pnas.84.14.4934. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kim S., Davis M., Sinn E., Patten P., Hood L. Antibody diversity: somatic hypermutation of rearranged VH genes. Cell. 1981 Dec;27(3 Pt 2):573–581. doi: 10.1016/0092-8674(81)90399-8. [DOI] [PubMed] [Google Scholar]
- Kocks C., Rajewsky K. Stable expression and somatic hypermutation of antibody V regions in B-cell developmental pathways. Annu Rev Immunol. 1989;7:537–559. doi: 10.1146/annurev.iy.07.040189.002541. [DOI] [PubMed] [Google Scholar]
- Kocks C., Rajewsky K. Stepwise intraclonal maturation of antibody affinity through somatic hypermutation. Proc Natl Acad Sci U S A. 1988 Nov;85(21):8206–8210. doi: 10.1073/pnas.85.21.8206. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kokubu F., Litman R., Shamblott M. J., Hinds K., Litman G. W. Diverse organization of immunoglobulin VH gene loci in a primitive vertebrate. EMBO J. 1988 Nov;7(11):3413–3422. doi: 10.1002/j.1460-2075.1988.tb03215.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kroese F. G., Leceta J., Döpp E. A., Herraez M. P., Nieuwenhuis P., Zapata A. Dendritic immune complex trapping cells in the spleen of the snake, Python reticulatus. Dev Comp Immunol. 1985 Fall;9(4):641–652. doi: 10.1016/0145-305x(85)90029-1. [DOI] [PubMed] [Google Scholar]
- Kuchino Y., Mori F., Kasai H., Inoue H., Iwai S., Miura K., Ohtsuka E., Nishimura S. Misreading of DNA templates containing 8-hydroxydeoxyguanosine at the modified base and at adjacent residues. Nature. 1987 May 7;327(6117):77–79. doi: 10.1038/327077a0. [DOI] [PubMed] [Google Scholar]
- Lafaille J. J., DeCloux A., Bonneville M., Takagaki Y., Tonegawa S. Junctional sequences of T cell receptor gamma delta genes: implications for gamma delta T cell lineages and for a novel intermediate of V-(D)-J joining. Cell. 1989 Dec 1;59(5):859–870. doi: 10.1016/0092-8674(89)90609-0. [DOI] [PubMed] [Google Scholar]
- Lebecque S. G., Gearhart P. J. Boundaries of somatic mutation in rearranged immunoglobulin genes: 5' boundary is near the promoter, and 3' boundary is approximately 1 kb from V(D)J gene. J Exp Med. 1990 Dec 1;172(6):1717–1727. doi: 10.1084/jem.172.6.1717. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Liu Y. J., Johnson G. D., Gordon J., MacLennan I. C. Germinal centres in T-cell-dependent antibody responses. Immunol Today. 1992 Jan;13(1):17–21. doi: 10.1016/0167-5699(92)90199-H. [DOI] [PubMed] [Google Scholar]
- Meyer J., Jäck H. M., Ellis N., Wabl M. High rate of somatic point mutation in vitro in and near the variable-region segment of an immunoglobulin heavy chain gene. Proc Natl Acad Sci U S A. 1986 Sep;83(18):6950–6953. doi: 10.1073/pnas.83.18.6950. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Needleman S. B., Wunsch C. D. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J Mol Biol. 1970 Mar;48(3):443–453. doi: 10.1016/0022-2836(70)90057-4. [DOI] [PubMed] [Google Scholar]
- Raaphorst F. M., Timmers E., Kenter M. J., Van Tol M. J., Vossen J. M., Schuurman R. K. Restricted utilization of germ-line VH3 genes and short diverse third complementarity-determining regions (CDR3) in human fetal B lymphocyte immunoglobulin heavy chain rearrangements. Eur J Immunol. 1992 Jan;22(1):247–251. doi: 10.1002/eji.1830220136. [DOI] [PubMed] [Google Scholar]
- Rajewsky K., Förster I., Cumano A. Evolutionary and somatic selection of the antibody repertoire in the mouse. Science. 1987 Nov 20;238(4830):1088–1094. doi: 10.1126/science.3317826. [DOI] [PubMed] [Google Scholar]
- Reynaud C. A., Anquez V., Weill J. C. The chicken D locus and its contribution to the immunoglobulin heavy chain repertoire. Eur J Immunol. 1991 Nov;21(11):2661–2670. doi: 10.1002/eji.1830211104. [DOI] [PubMed] [Google Scholar]
- Richter C., Park J. W., Ames B. N. Normal oxidative damage to mitochondrial and nuclear DNA is extensive. Proc Natl Acad Sci U S A. 1988 Sep;85(17):6465–6467. doi: 10.1073/pnas.85.17.6465. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schwager J., Bürckert N., Courtet M., Du Pasquier L. Genetic basis of the antibody repertoire in Xenopus: analysis of the Vh diversity. EMBO J. 1989 Oct;8(10):2989–3001. doi: 10.1002/j.1460-2075.1989.tb08449.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schwager J., Bürckert N., Courtet M., Du Pasquier L. The ontogeny of diversification at the immunoglobulin heavy chain locus in Xenopus. EMBO J. 1991 Sep;10(9):2461–2470. doi: 10.1002/j.1460-2075.1991.tb07785.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schwager J., Bürckert N., Schwager M., Wilson M. Evolution of immunoglobulin light chain genes: analysis of Xenopus IgL isotypes and their contribution to antibody diversity. EMBO J. 1991 Mar;10(3):505–511. doi: 10.1002/j.1460-2075.1991.tb07976.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schwager J., Grossberger D., Du Pasquier L. Organization and rearrangement of immunoglobulin M genes in the amphibian Xenopus. EMBO J. 1988 Aug;7(8):2409–2415. doi: 10.1002/j.1460-2075.1988.tb03086.x. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Schwager J., Mikoryak C. A., Steiner L. A. Amino acid sequence of heavy chain from Xenopus laevis IgM deduced from cDNA sequence: implications for evolution of immunoglobulin domains. Proc Natl Acad Sci U S A. 1988 Apr;85(7):2245–2249. doi: 10.1073/pnas.85.7.2245. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Shlomchik M. J., Marshak-Rothstein A., Wolfowicz C. B., Rothstein T. L., Weigert M. G. The role of clonal selection and somatic mutation in autoimmunity. 1987 Aug 27-Sep 2Nature. 328(6133):805–811. doi: 10.1038/328805a0. [DOI] [PubMed] [Google Scholar]
- Tonegawa S. Somatic generation of antibody diversity. Nature. 1983 Apr 14;302(5909):575–581. doi: 10.1038/302575a0. [DOI] [PubMed] [Google Scholar]
- Wabl M. R., Du Pasquier L. Antibody patterns in genetically identical frogs. Nature. 1976 Dec 16;264(5587):642–644. doi: 10.1038/264642a0. [DOI] [PubMed] [Google Scholar]
- Wabl M., Burrows P. D., von Gabain A., Steinberg C. Hypermutation at the immunoglobulin heavy chain locus in a pre-B-cell line. Proc Natl Acad Sci U S A. 1985 Jan;82(2):479–482. doi: 10.1073/pnas.82.2.479. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wabl M., Jäck H. M., Meyer J., Beck-Engeser G., von Borstel R. C., Steinberg C. M. Measurements of mutation rates in B lymphocytes. Immunol Rev. 1987 Apr;96:91–107. doi: 10.1111/j.1600-065x.1987.tb00511.x. [DOI] [PubMed] [Google Scholar]
- Weiss U., Rajewsky K. The repertoire of somatic antibody mutants accumulating in the memory compartment after primary immunization is restricted through affinity maturation and mirrors that expressed in the secondary response. J Exp Med. 1990 Dec 1;172(6):1681–1689. doi: 10.1084/jem.172.6.1681. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wilson M. R., Middleton D., Alford C., Sullivan J. T., Litman G. W., Warr G. W. Putative immunoglobulin VH genes of the goldfish, Carassius auratus, detected by heterologous cross-hybridization with a murine VH probe. Vet Immunol Immunopathol. 1986 Jun;12(1-4):21–28. doi: 10.1016/0165-2427(86)90106-6. [DOI] [PubMed] [Google Scholar]
- Yamada M., Wasserman R., Reichard B. A., Shane S., Caton A. J., Rovera G. Preferential utilization of specific immunoglobulin heavy chain diversity and joining segments in adult human peripheral blood B lymphocytes. J Exp Med. 1991 Feb 1;173(2):395–407. doi: 10.1084/jem.173.2.395. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zezza D. J., Mikoryak C. A., Schwager J., Steiner L. A. Sequence of C region of L chains from Xenopus laevis Ig. J Immunol. 1991 Jun 1;146(11):4041–4047. [PubMed] [Google Scholar]
- Zhang L. H., Vrieling H., van Zeeland A. A., Jenssen D. Spectrum of spontaneously occurring mutations in the hprt gene of V79 Chinese hamster cells. J Mol Biol. 1992 Feb 5;223(3):627–635. doi: 10.1016/0022-2836(92)90979-t. [DOI] [PubMed] [Google Scholar]