Table 3:

Shotgun metagenomic read alignment statistics

		Read alignment
Sample	Total reads	ratea (%)
Control mix 1 replicate A	18 816 478	97.05
Control mix 1 replicate C	17 883 449	97.11
Control mix 2 replicate A	20 343 317	97.18
Control mix 1 replicate C	18 138 322	97.91
T1 D1 replicate A	20 027 063	88.15
T1 D1 replicate B	21 175 617	90.22
T2 D1 replicate A	18 173 778	90.12
T2 D1 replicate B	21 705 055	91.02
T2 D3 replicate A	21 282 134	97.12
T2 D3 replicate B	21 112 818	96.84
Y1 D1 replicate A	20 196 267	96.04
Y1 D1 replicate B	20 404 693	96.39
Y2 D1 replicate A	18 384 104	93.13
Y2 D1 replicate B	18 960 301	92.61
Y2 D3 replicate A	20 731 661	96.66
Y2 D3 replicate B	19 327 663	96.75
Y3 D1 replicate A	19 843 426	94.48
Y3 D1 replicate B	21 559 192	94.29
Y3 D3 replicate A	19 533 468	96.69
Y3 D3 replicate B	19 258 370	95.77

^aSequencing reads from each sample (pre-filtered to remove grapevine matches) were aligned against the wine reference consortium (Table S3).