Table 2. The reads compared with the reference genome.
| Sample name | CM1 | CM2 | CM3 | -SeM1 | -SeM2 | -SeM3 |
|---|---|---|---|---|---|---|
| Total reads | 83010046.00 | 98403400.00 | 101371572.00 | 94536776.00 | 98587078.00 | 95121134.00 |
| Total mapped | 72626663 (87.49%) | 85813152 (87.21%) | 88743743 (87.54%) | 82600375 (87.37%) | 85140309 (86.36%) | 82062723 (86.27%) |
| Multiple mapped | 8606169 (10.37%) | 9493163 (9.65%) | 9772963 (9.64%) | 9902005 (10.47%) | 10650590 (10.8%) | 9827915 (10.33%) |
| Uniquely mapped | 64020494 (77.12%) | 76319989 (77.56%) | 78970780 (77.9%) | 72698370 (76.9%) | 74489719 (75.56%) | 72234808 (75.94%) |
| Non-splice reads | 41902024 (50.48%) | 50779499 (51.6%) | 51737671 (51.04%) | 46733889 (49.43%) | 49858071 (50.57%) | 45244393 (47.57%) |
| Splice reads | 22118470 (26.65%) | 25540490 (25.95%) | 27233109 (26.86%) | 25964481 (27.46%) | 24631648 (24.98%) | 26990415 (28.37%) |