Overexpression of long noncoding RNA PEG10 promotes proliferation, invasion and metastasis of hypopharyngeal squamous cell carcinoma

Abstract

The present study aimed to investigate the impact of overexpression of long noncoding RNA PEG10 (lncRNA PEG10) on the proliferation, invasion and metastasis of hypopharyngeal squamous cell carcinoma (HSCC). Quantitative reverse transcription polymerase chain reaction was used to quantify lncRNA PEG10 expression levels in HSCC tumor tissues samples, para-carcinoma tissue samples and the HSCC FaDu cell line. Cell proliferation assays, Transwell invasion assays and wound healing assays were used to evaluate the effects of lncRNA PEG10 on FaDu cells in vitro. In 56 eligible patients, lncRNA PEG10 was expressed at higher levels in HSCC tumor tissues compared with para-carcinoma tissues, and significant associations were observed between increased tumor expression of lncRNA PEG10 and primary tumor size, lymph node status and tumor node metastasis stage. In the in vitro experimental studies, enhanced expression of lncRNA PEG10 was significantly associated with increased proliferation, invasion and metastasis of FaDu cells. lncRNA PEG10 was upregulated in HSCC, and its overexpression in HSCC cells promoted an increase in the tumorigenic activities of proliferation, invasion and migration. The potential underlying mechanisms require investigation in future studies.

Introduction

Hypopharyngeal squamous cell carcinoma (HSCC) is one of the most common types of aggressive head and neck malignancy, with an incidence of ~10 cases/million people annually (1). A total of >75% of patients with HSCC have an advanced stage of the disease at the time of diagnosis (2), and the prognosis of these patients is poor with a 5-year overall survival rate of 30–35% (3–5). The poor prognosis and frequently advanced stage at diagnosis are typically attributed to the local aggressiveness of the tumor, which exhibits a propensity for submucosal spread, invasion into adjacent structure and metastasis due to abundant lymphatic drainage (6,7). These events are regulated by numerous key molecular oncogenic pathways. Therefore, understanding these pathways in HSCC may assist in understanding the biological characteristics of the tumor, and lead to novel insights to the search for improved disease therapy and preventative strategies.

Long noncoding RNAs (lncRNAs) are a novel class of RNA molecules defined as transcripts of >200 nucleotides (nt) that lack protein coding potential. They are typically transcribed by RNA polymerase II, but possess no open reading frame and map to intronic and intergenic regions. Additionally, lncRNAs demonstrate epigenetic characteristics that are similar to protein-coding genes (8). It has been estimated that ~15,000 lncRNAs are present in the human genome (9). Previous studies have demonstrated that lncRNAs may function as oncogenes or tumor suppressors in the cancer initiatome (10), serve important roles in carcinogenesis and cancer proliferation, invasion and metastasis, and correlate with cancer prognosis (11,12). Therefore, lncRNAs are a potential novel class of cancer biomarkers (13).

The present study focuses on lncRNA paternally expressed 10 (PEG10; NONCODE Gene ID NONHSAG048235), which is located on human chromosome 7 between the 94285681 and 94298949 base sites and is 763 bp in length (14). It was demonstrated that aberrant expression of PEG10 is associated with a number of malignancies, including hepatocellular carcinoma (15), B-cell lymphocytic leukemia (16), lymphoma (17) and esophageal cancer (18). With respect to esophageal cancer, it was identified that PEG10 regulates proliferation and invasion of esophageal cancer cells (18). In addition, studies have revealed that PEG10 is highly conserved across mammalian species, and serves an important role in cell proliferation, differentiation and metastasis (10,19). However, the potential role of PEG10 in human hypopharyngeal carcinoma remains to be elucidated. Therefore, the aim of the present study was to investigate the role of PEG10 in HSCC.

Materials and methods

Patient selection and tissue sample collection

Patients who underwent curable surgery for hypopharyngeal carcinoma between January 2010 and October 2014 were screened, and cases, in accordance with the following criteria, were selected for the study: i) Diagnosis of HSCC was confirmed by postoperative pathological results; ii) patient did not receive chemotherapy or radiotherapy prior to surgery; iii) patient presented with local disease without any distant metastases at the time of diagnosis, and the tumor was resectable; iv) complete tumor resection was described in the surgical record with expected disease-free survival of ≥3 months; v) patient received standard surgery for hypopharyngeal carcinoma, namely, primary tumor resection with lymph node dissection, and surgical margins were microscopically negative with no residual tumor; and vi) clinicopathological information (sex, age, tumor location, lymph node metastasis, differentiation and classification) was available.

For every eligible patient, primary tumor tissue and para-carcinoma tissue samples were immediately collected and frozen in liquid nitrogen following resection and stored at −80°C until RNA extraction. Para-carcinoma tissue was defined as normal tissue adjacent to the primary tumor without any microscopic invasion.

All patients were from the Second Hospital of Shandong University and the Provincial Hospital Affiliated to Shandong University (Jinan, China). Written informed consent was obtained from all patients prior to participation in the study. The medical ethics committee of the Second Hospital of Shandong University and the Shandong Provincial Hospital approved the present study.

RNA extraction and reverse transcription quantitative polymerase chain reaction (RT-qPCR) assay

For all eligible patients, total RNA was extracted from frozen primary tumor and para-carcinoma tissue samples. Total RNA was extracted and purified with the RecoverAll™ Total Nucleic Acid Isolation kit (Thermo Fisher Scientific, Inc., Waltham, MA, USA). To ensure that total RNA fulfilled the requirements for the qPCR, the purity and quantity of RNA for each sample were analyzed (a minimum A260/A280 ratio of >1.8 was applied for all samples) and RNA integrity was assessed by formaldehyde-modified gel electrophoresis. Reverse transcription reactions were performed using 2 µg total RNA, lncRNA PEG10 reverse transcription primer (Invitrogen; Thermo Fisher Scientific, Inc.), 5X first-strand buffer (Thermo Fisher Scientific, Inc.), 0.1 M DTT (Thermo Fisher Scientific, Inc.), a dNTP mixture (Takara, Bio, Inc., Otsu, Japan), Moloney Murine Leukemia Virus reverse transcriptase (Thermo Fisher Scientific, Inc.) and recombinant RNasin® RNase inhibitor (Promega Corporation, Madison, WI, USA). Following reverse transcription, qPCR reactions were performed using a 7900 HT Fast RealTime PCR system (Applied Biosystems; Thermo Fisher Scientific, Inc.) according to the manufacturer's protocol. Dissociation curve analysis was performed to assess the specificity of the amplified product. GAPDH was used as an internal control by comparing its expression levels in each of the specimens. Finally, 1.5% non-denaturing agarose gel electrophoresis using 4 µl qPCR products was used to evaluate their quantity and specificity.

The thermocycler conditions for the RT-qPCR were as follows: 10 min denaturation at 95°C, followed by 40 cycles of 95°C for 15 sec, and 60°C for 1 min. SYBR-Green was used as the fluorophore. The method of quantification used for the qPCR was 2^−ΔΔCq method (20) and the results were replicated three times.

The following primer sequences were used: lncRNA PEG10 primer sequence: Forward, 5′-CATCCTTCCTGTCTTCGC-3′; reverse, 5′-CCCTCTTCCACTCCTTCTTT-3′; probe, 5′-Fam-CCGCTTATTTCACGCGAGGA-Tamra-3′; GAPDH primer sequence: Forward, 5′-TGGTATCGTGGAAGGACTCA-3′; reverse, 5′-CCAGTAGAGGCAGGGATGAT-3′; Probe, 5′-Fam-CGCCACAGTTTCCCGGAGG-Tamra-3′. All primers were synthesized by Invitrogen (Thermo Fisher Scientific, Inc.).

Cell culture and transfection

The HSCC FaDu cell line was obtained from Shanghai Institutes for Biological Science (Shanghai, China). FaDu cells were cultured in RPMI-1640 medium (Nanjing KeyGen Biotech Co., Ltd., Nanjing, China) supplemented with 10% fetal bovine serum (FBS; Invitrogen; Thermo Fisher Scientific, Inc.) All cells were cultured at 37°C in a humidified atmosphere containing 5% CO₂.

In order to obtain high expression of lncRNA PEG10, FaDu cells were transfected with lncRNA PEG10. Small interfering RNA (siRNA) against lncRNA PEG10 were also designed and transfected to inhibit lncRNA PEG10 expression. Transfection was performed using Lipofectamine 2000® (Invitrogen; Thermo Fisher Scientific, Inc.) according to the manufacturer's protocol. The experimental groups included FaDu cells transfected with lncRNA PEG10 (PEG10+), cells transfected with silencer (si) lncRNA (si-lnc) and the negative control cells (NC) transfected with a nonsense siRNA control sequence. Transfection efficiency was measured in each experimental group 5 times using RT-qPCR analysis.

Cell proliferation assay

The Cell Counting kit-8 (CCK-8; Dojindo Molecular Technologies, Inc., Kumamoto, Japan) was used to evaluate the proliferative activity of FaDu cells according to the manufacturer's protocol. Following transfection, cells from each experimental group were seeded into 96-well plates at a density of 1×10⁴ cells/well, with 5 replicate wells/group. The absorbance value for each well was determined using CCK-8. The optical density (OD) value represented the proliferation of FaDu cells and was measured daily over 4 consecutive days at a wavelength of 450 nm (OD450) to estimate the number of viable cells.

Transwell invasion assay

Transwell invasion assays were used to evaluate invasive activity of FaDu cells and were performed using a 24-well chamber containing Matrigel (3.9 µg/µl, 60–80 µl)-coated membranes with a pore size of 8 µm (Costar; Corning Incorporated, Corning, NY, USA). Experimental group cells and the control cells were collected and resuspended in serum-free medium at a concentration of 2×10⁵ cells/ml. Cell suspensions (200 µl) were added to the upper chamber, the bottom chamber was filled with 500 µl of culture medium containing 10% FBS and cells were incubated for 48 h at 37°C with 5% CO₂. A total of 5 wells were used for each group. Following incubation, the medium and stationary cells on the upper membrane surface were removed with a cotton tip and the cells that had passed through the filter were fixed in methanol, stained with 0.1% crystal violet for 10 min, mounted and dried at 80°C for 30 min. The number of cells invading the Matrigel was counted in 3 randomly selected fields using an inverted microscope at magnification, ×200. The experiment was repeated 5 times.

Wound healing assay

Wound healing assays were performed to evaluate the migration activity of FaDu cells. Then, 5×10⁵ cells/ml cells from each experimental group were seeded on 6-well plates and cultured in RPMI-1640 medium supplemented with 10% FBS for 24 h to form a confluent monolayer cell. An artificial scratch wound on each confluent monolayer was created with a 10-µl pipette tip. Serum-free medium was added for an additional 24 h incubation, and images of the cells were captured at 4 different time points (0, 24, 36 and 48 h) using an inverted microscope at magnification, ×200. The distance between the borders of the wounded region lacking cells was measured, and the relative migration ratio was calculated at each time point with 5 replicates/group.

Statistical analysis

The expression level of lncRNA PEG10 in each experimental group was calculated as mean ± standard deviation. The differences between expression levels of lncRNA PEG10 were analyzed with paired sample t-tests, independent sample t-tests or one-way analysis of variance (ANOVA) with the Bonferroni test used as the post-hoc test. Statistical analyses were performed using the SPSS statistical software program (SPSS v17.0, SPSS Inc., Chicago, IL, USA). P<0.05 was considered to indicate a statistically significant difference.

Results

Eligible patient clinicopathological characteristics and association with the expression of lncRNA PEG10

Following the inclusion criteria, 56 patients were eligible for the present study. The eligible patients included 40 males and 16 females, with a median age of 59 years (range, 47–76). The post-operation stage was defined according to the 8th edition American Joint Committee on Cancer (AJCC) classification system (21). All patient characteristics are summarized in Table I.

Table I.

Association of lncRNA PEG10 expression with clinicopathological characteristics.

Clinicopathological characteristics	n	lncRNA PEG10 expression (2−ΔΔCq values)a	P-value
Patient number	56
Age, years			0.3580
≤60	32	3.2725±1.2293
>60	24	3.5850±1.2734
Sex			0.1219
Male	40	3.2430±1.2221
Female	16	3.8150±1.2514
Primary tumor site			0.9938
Pyriform sinuses	39	3.3967±1.3083
Posterior and lateral hypo-pharyngeal walls	13	3.4169±1.1604
Postcricoid area	4	3.4675±1.1915
Pathological differentiation			0.4564
Well-differentiated	12	3.0208±1.1527
Moderately differentiated	19	3.5931±1.1285
Poorly differentiated	25	3.4496±1.3761
Primary tumor size			0.0174
T1	13	2.8131±1.0142
T2	23	3.2330±1.1519
T3	20	3.9915±1.2943
Lymph node status			0.0002
N0	19	2.5774±0.9506
N+	37	3.8322±1.1720
Clinical staging (Tumor node metastasis)			<0.0000
I/II	13	2.2100±0.7106
III	15	3.2920±0.7290
IV	28	4.0232±1.2550

^aData are presented as the mean ± standard deviation.

The expression levels of lncRNA PEG10 in tumor tissues and para-carcinoma tissues, presented as 2^−ΔΔCq values, were 3.406±1.247 and 1.429±0.544, respectively (P<0.05; Fig. 1). The associations between the expression of lncRNA PEG10 in tumor tissues and clinicopathological characteristics of patients with HSCC were also analyzed. The results demonstrated that primary tumor size, lymph node status and Tumor node metastasis (TNM) stage were significantly associated with an increased expression of lncRNA PEG10 (P<0.05; Table I). By contrast, there were no significant associations observed between lncRNA PEG10 expression and age, sex, primary tumor site or pathological differentiation (Table I). Based on these results, additional experimental studies with lncRNA PEG10 were performed to determine its role in HSCC pathogenesis.

Figure 1.

lncRNA PEG10 expression levels in HSCC tumor tissues and para-carcinoma tissues were presented as 2^−ΔΔCt values. The expression level of lncRNA PEG10 was significantly upregulated in HSCC tumor tissues (P<0.05). lncRNA, long noncoding RNA; HSCC, hypopharyngeal squamous cell carcinoma; PEG10, paternally expressed 10.

Expression profile of lncRNA PEG10 in transfected FaDu cells

Expression levels of lncRNA PEG10 were examined using RT-qPCR in FaDu cells transfected with lncRNA PEG10 (PEG10+), negative control RNA (NC) or silencer lncRNA PEG10 (si-lnc). Expression levels quantified as 2^−ΔΔCq values were 2.448±0.440, 1.762±0.280 and 0.552±0.209 in PEG10+, NC and si-lnc groups, respectively (Fig. 2). Differences among groups were identified to be significantly different using one-way ANOVA analysis (P<0.05). Post-hoc testing demonstrated that lncRNA PEG10 expression was significantly reduced in cells transfected with silencer si-lnc RNA compared with PEG10+ and NC cells (P<0.05), while lncRNA PEG10 expression was enhanced in PEG10+ cells compared with NC cells (P<0.05).

Figure 2.

lncRNA PEG10 expression levels in the 3 experimental groups of FaDu cells were presented as 2^−ΔΔCt values. lncRNA PEG10 expression was significantly reduced in cells transfected with silencer si-lncRNA compared with PEG10+ and NC cells (P<0.05), while lncRNA PEG10 expression was enhanced in PEG10+ cells compared with NC cells (P<0.05). lncRNA, long noncoding RNA; PEG10, paternally expressed 10; si-lnc, silencer lncRNA; NC, negative control.

lncRNA PEG10 promotes cell proliferation

The alterations in lncRNA PEG10 expression in transfected FaDu cells were associated with alterations in proliferative capacity. Mean OD₄₅₀ values from replicate cell proliferation assays of PEG10+, NC and si-lnc cells, respectively, were as follows: 24 h: 0.496±0.075, 0.384±0.035 and 0.260±0.052; 48 h: 0.892±0.033, 0.672±0.046 and 0.428±0.080; 72 h: 1.124±0.101, 0.900±0.073 and 0.560±0.037; 96 h: 1.308±0.101, 1.054±0.102 and 0.752±0.056. The cell growth curves are demonstrated in Fig. 3. Proliferation values for the PEG10+ group were significantly increased compared with those of the NC group at all time points (P<0.05), while values for the si-lnc group were significantly decreased at the identical time points compared with the PEG10+ and NC groups (P<0.05). These results indicate that overexpression of lncRNA PEG10 promoted in vitro proliferation of FaDu cells.

Figure 3.

Mean OD₄₅₀ values from replicate cell proliferation assays of PEG10+, NC and si-lncRNA cells. Proliferation values for the PEG10+ group were significantly higher compared with those of the NC group at all time points (P<0.05), while values for the si-lnc group were significantly decreased at the same time points compared with the PEG10+ and NC groups (P<0.05). OD, optical density; lnc, long noncoding; PEG10, paternally expressed 10; si-lnc, silencer lncRNA; NC, negative control.

lncRNA PEG10 promotes cell invasion

In Transwell assays, the means of cell numbers penetrating the membranes in the PEG10+, NC and si-lnc groups were 1.408±0.099×10⁵, 0.988±0.092×10⁵ and 0.672±0.081×10⁵, respectively. The number of invading cells was significantly higher in the PEG10+ group compared with the NC group (P<0.05; Fig. 4). By contrast, the number of invading cells in the si-lnc group was significantly lower compared with the that in the PEG10+ and NC groups (P<0.05; Fig. 4). These results indicate that the overexpression of lncRNA PEG10 increased the invasive capacity of FaDu cells in vitro.

Figure 4.

Means of cell numbers penetrating the Transwell membranes in the 3 experimental groups in FaDu cells. The number of invading cells was significantly increased in the PEG10+ group compared with the NC group (P<0.05). By contrast, the number of invading cells in the si-lnc group was significantly reduced compared with the corresponding numbers in the PEG10+ and NC groups (P<0.05). lnc, long noncoding; PEG10, paternally expressed 10; si-lnc, silencer lncRNA; NC, negative control.

lncRNA PEG10 promotes cell migration

Finally, cell migration in transfected FaDu cells was examined using wound healing assays. The mean relative migration ratios for cells in the PEG10+, NC and si-lnc groups, respectively, were as follows: 24 h: 0.514±0.045, 0.356±0.036 and 0.320±0.047; 36 h: 0.808±0.041, 0.652±0.051 and 0.552±0.054; 48 h: 0.952±0.031, 0.830±0.036 and 0.698±0.038. The relative migration ratio of FaDu cells in the PEG10+ group was significantly increased compared with the ratios in the NC and si-lnc groups at each time point (P<0.05; Fig. 5). Similarly, the relative migration ratio of FaDu cells in the NC group was significantly increased compared with the ratio in the si-lnc group at 36 and 48 h (P<0.05; Fig. 5), but the difference was not significant at 24 h. These results suggest that downregulation of lncRNA PEG10 dramatically decreased the migration ability of FaDu cells.

Figure 5.

Mean relative migration ratios for the 3 experimental groups of FaDu cells. The relative migration ratio of FaDu cells in the PEG10+ group was significantly increased compared with the ratios in the NC and si-lnc groups at each time point (P<0.05). Similarly, the relative migration ratio of FaDu cells in the NC group was significantly increased compared with the ratio in the si-lnc group at 36 and 48 h (P<0.05), but the difference was not significant at 24 h. lnc, long noncoding; PEG10, paternally expressed 10; si-lnc, silencer lncRNA; NC, negative control.

Discussion

In humans, ~70% of the genome is transcribed to generate a range of noncoding RNAs (22). Based on transcript size, noncoding RNAs are classified into small noncoding RNAs (<200 nt) and lncRNAs (>200 nt). Small noncoding RNAs, particularly miRNAs, are well characterized as post-transcriptional regulators of mRNAs and have established roles in cancer (23,24). lncRNAs remain poorly characterized, but evidence for their importance and functionality has increased in previous years. Due to their numerous structural and biochemical characteristics, lncRNAs are implicated in a diverse range of functions, including nuclear architecture, immune surveillance, imprinting, epigenetic regulation, cellular trafficking, splicing and pluripotency of embryonic stem cells. lncRNAs may regulate gene expression at a number of levels, including chromatin modification, transcription, splicing, translation, post-transcriptional regulation, processing of small RNAS and other important functions (25,26). They may affect and regulate the cell cycle, proliferation, differentiation and apoptosis. Previous studies provide evidence that lncRNAs are also involved in cancer development and the maintenance of tumorigenesis (25), and serve important roles in modulating the proliferation, invasion and metastasis of tumors (27). Previously, dysregulation of lncRNAs has been detected in numerous types of cancer, including breast cancer, hepatocellular carcinoma, melanoma, bladder and prostate cancer (12). Furthermore, the role of certain lncRNAs in cancer, including HOX transcript antisense RNA, metastasis associated lung adenocarcinoma transcript 1 and taurine up-regulated 1 (28–30), has been previously elucidated.

HSCC is one of the most prevalent types of aggressive head and neck malignancy. The most important clinical characteristic of this cancer is its tendency to invade adjacent structures and lymph node metastasis (31). However, despite previous investigation, the underlying mechanisms controlling invasion and metastasis of HSCC remain to be elucidated. The modulatory functions of lncRNAs in HSCC remain to be fully understood. Therefore, the present study investigated the effect of lncRNA PEG10 on proliferation, invasion and metastasis in HSCC.

In a previous esophageal cancer study (18), PEG10 was indicated to regulate proliferation, invasion and metastasis of esophageal cancer cells. In the present study, the expression levels of PEG10 in tumor tissues and normal para-carcinoma tissues in HSCC were measured and demonstrated that there were increased levels in the cancerous tissue. This indicates that PEG10 is associated with HSCC and may possibly participate in the development and carcinogenesis of HSCC. In the present study, the association between PEG10 expression and clinicopathological characteristics in 56 eligible patients exhibited a marked association between PEG10 expression in HSCC tumor tissues and primary tumor size, local lymph node status and TNM stage. These results suggest that overexpression of lncRNA PEG10 in tumor tissues promotes the proliferation, invasion and local lymph node metastasis of HSCC, supporting the hypothesis of the present study regarding the role of PEG10 in cancer, and providing a basis for further in vitro experimental studies using the HSCC FaDu cell line.

In a series of in vitro experiments, PEG10 levels were manipulated in transfected FaDu cells and it was identified that increased expression of PEG10 enhanced the proliferation, invasion and migration of FaDu cells. These results suggest that an overexpression of lncRNA PEG10 may promote proliferation, invasion and metastasis of HSCC cells, in accordance with the association between PEG10 expression and clinicopathological characteristics. Therefore, results from clinical and in vitro approaches support the conclusion that lncRNA PEG10 is involved in HSCC.

There have been a small number of studies regarding the potential mechanisms underlying the ability of PEG10 to promote proliferation, invasion and metastasis of HSCC cells. Zang et al (18) suggested that lncRNA PEG10 may modulate these functions by controlling cell cycle distribution. As for other lncRNAs, certain studies have indicated that lncRNAs may regulate cell proliferation, invasion and metastasis by modulating downstream protein expression, cell cycle arrest and apoptosis (18,32). As lncRNAs may regulate gene expression at transcriptional and post-transcriptional levels (12,24,25), it has been difficult to demonstrate the exact underlying mechanism by which PEG10 promotes proliferation, invasion and metastasis of HSCC cells without systematic studies.

In conclusion, the present study demonstrated that lncRNA PEG10 was upregulated in HSCC and that an overexpression of lncRNA PEG10 promoted proliferation, invasion and migration of the FaDu HSCC cell line. These data suggest that lncRNA PEG10 may be a effective therapeutic target in hypopharyngeal carcinoma therapy and that mechanisms underlying its effect should be further investigated.