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. 2017 Sep 8;5:e3799. doi: 10.7717/peerj.3799

Table 4. Reproducibility of the LAMP testing using clinical and cultured samples.

Samples Runa Time to amplify (min) Melt (°C) Time (Mean + SD) Melt (Mean + SD)
C. pecorumpositive samples
Koala rectal swab 1 20.15 83.44 20.53, 0.54 83.32, 0.16
2 20.30 83.37
3 21.15 83.14
Marsbar DNA 1 13.50 83.50 13.27, 0.20 83.55, 0.06
2 13.15 83.52
3 13.15 83.62
Koala A2 DNA 1 12.00 83.35 11.43, 0.51 83.41, 0.05
2 11.00 83.45
3 11.30 83.43
RI koala UGT swab 1 17.00 83.34 17.72, 0.62 83.21, 0.12
2 18.00 83.21
3 18.15 83.09
L14 DNA 1 13.15 83.53 13.15, 0 83.50, 0.02
2 13.15 83.50
3 13.15 83.48
HsLuRz DNA 1 13.45 83.49 13.63, 0.32 83.40, 0.08
2 13.45 83.36
3 14.00 83.34
K20 cloaca swab 1 22.00 82.83 22.2, 0.23 83.01, 0.19
2 22.15 83.00
3 22.45 83.20
C. psittacipositive samples
Cr009 DNA 1 6.45 84.30 6.40, 0.09 84.33, 0.03
2 6.45 84.36
3 6.30 84.34
HoRE DNA 1 5.00 84.46 5.10, 0.08 84.45, 0.14
2 5.15 84.58
3 5.15 84.30
B2 DNA 1 10.30 84.08 10.10, 0.17 84.17, 0.08
2 10.00 84.20
3 10.00 84.24
Horse placental swab 1 11.15 82.90 10.58, 0.49 83.19, 0.26
2 10.30 83.42
3 10.30 83.24
Horse_pl DNA 1 10.30 84.53 10.87, 0.98 84.41, 0.18
2 12.00 84.21
3 10.30 84.50

Notes.

a

The assay was performed in Genie III Real-time fluorometer, with the amplification times and annealing temperatures recorded at the end of each run. The samples were tested in three different runs by two different operators.