The new chromone–thiazole hybrid presented here is a candidate as a selective ligand for adenosine receptors. Its structure shows packing polymorphism: the two polymorphs (one with space group P21/n and one with P21/c) show slightly different conformations and the major change induced by crystallization regards the intramolecular contacts defining the supramolecular structure.
Keywords: crystal structure, drug design, chromones, conformation, supramolecular structure
Abstract
Chromone derivatives have been extensively studied recently because of to their promising biological activities. The new title chromone–thiazole hybrid presented here, C14H10N2O3S, is a candidate as a selective ligand for adenosine receptors. The compound has been synthesized and characterized by the usual spectroscopic means (NMR and EM/IE) and its structure elucidated by X-ray crystallography, which revealed the presence of packing polymorphism. The two polymorphs (one with space group P21/n and one with P21/c) show slightly different conformations and the major change induced by crystallization regards the intramolecular contacts defining the supramolecular structure. Those differences been highlighted by Hirshfeld surface analysis mapped over d norm and ESP.
Chemical context
Chromones are 4H-benzopyran-4-one heterocycles and they have been studied thoroughly because of their interesting biological activities (Gaspar et al., 2012a
▸,b
▸; 2014 ▸) Thiazole-based compounds have been used in therapeutics as antimicrobial, antiviral and antifungal agents for a long time (Souza, 2005 ▸; Siddiqui et al., 2009 ▸
) but, in the past decades, they have been identified as potent and selective ligands for the adenosine receptor (Sharma et al. 2009 ▸; Jung et al., 2004 ▸
). In a continuation of our project related to the synthesis of pharmacologically useful heterocycles, the title compound has been designed as a potential ligand for human adenosine receptors.
This work reports the synthesis and structural characterization of this chromone–thiazole hybrid, N-(5-methylthiazol-2-yl)-4-oxo-4H-chromene-3-carboxamide, 1, that was synthesized following a method previously described by Cagide et al. (2015 ▸). The chromone ring (A) is connected to the thiazole ring (C) though a carboxamide spacer (B). The compound crystallizes with two different morphologies and the structural analysis revealed the presence of packing polymorphism. Since this compound will be assayed in tests to evaluate its biological activity, the establishment of the polymorphic structures is of the utmost importance.
Structural commentary
The molecular structures of the polymorphs are shown in Fig. 1 ▸. This compound presents packing polymorphism and crystallizes in monoclinic space groups P21/n and P21/c, the latter with two molecules in the asymmetric unit (identified as mol#1 and mol#2). In 1_ P 21/ c, mol#1 fits into mol#2 with values of quaternion fit weighted of 0.093 Å (unit-weight r.m.s. fit of 0.086 Å for 20 atoms).
Figure 1.
A view of the asymmetric unit of 1_ P 21/ n with the atom-numbering scheme (top). A view of the asymmetric unit of 1_ P 21/ c with mol#1 (left) and mol#2 (right) with the atom-numbering scheme (bottom). Displacement ellipsoids are drawn at the 70% probability level.
The conformation around the amide rotamer for chromone carboxamides can be either -anti or -syn. The former appears to be more probable since it lowers the steric hindrance between the two aromatic rings as compared to the -syn rotamer. Structural characterizations made previously in other 4H-chromene-3-carboxamides (Gomes et al., 2015a ▸,b ▸) show that, when the amide oxygen atom (O3/O13/O23) is trans-related to the pyran oxygen atom of the chromone (O1/O11/O21) the -anti conformation predominates since it permits the establishment of a short intramolecular N—H⋯O(carbonyl) hydrogen bond (geometric parameters for the intramolecular H bond are given in Tables 1 ▸ and 2 ▸), which generates an S(6) ring.
Table 1. Hydrogen-bond geometry (Å, °) for P21/n .
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
N3—H3⋯O4 | 0.88 | 1.96 | 2.687 (5) | 139 |
C2—H2⋯O4i | 0.95 | 2.38 | 3.030 (5) | 126 |
C8—H8⋯N33i | 0.95 | 2.56 | 3.455 (6) | 157 |
Symmetry code: (i) .
Table 2. Hydrogen-bond geometry (Å, °) for 1_P2~1~_c .
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
N13—H13⋯O14 | 0.80 (4) | 1.99 (4) | 2.671 (3) | 143 (4) |
C12—H12⋯O24i | 0.95 | 2.27 | 2.963 (4) | 129 |
C15—H15⋯O23ii | 0.95 | 2.43 | 3.353 (4) | 164 |
C136—H13C⋯O13iii | 0.98 | 2.51 | 3.449 (4) | 162 |
N23—H23⋯O24 | 0.82 (4) | 2.05 (3) | 2.697 (3) | 136 (3) |
C22—H22⋯O14ii | 0.95 | 2.19 | 2.999 (4) | 142 |
C25—H25⋯O13iv | 0.95 | 2.48 | 3.352 (4) | 153 |
Symmetry codes: (i) ; (ii)
; (iii)
; (iv)
.
The S atom of the thiazole ring is in a -cis position with respect to the carbonyl O3/O23/O13 atom of the amide in both polymorphs. This feature has also been observed for similar compounds (Cagide et al., 2015 ▸). Gas-phase ab initio geometry optimization and natural atomic charges obtained by population analysis [using natural bond orbital (NBO) analysis] revealed that negative charges are located at the two nitrogen atoms and at the three oxygen atoms, while the positive charges reside at the amide carbon atom as well as at the sulfur atom of the thiazole ring, suggesting that a further stabilization may arise when the S atom is pointing to the carboxyl oxygen atom of the amide. This was also confirmed here by similar calculations: the results obtained for atomic charges by NBO analysis, performed after single-point energy calculation, are in Fig. 2 ▸. In addition, the calculation of energies and charges of several conformers, obtained by rotation of the thiazole ring (C) around the amide spacer (B) were made, showing that the lowest energy is obtained when the sulfur atom is around 0°. Details are provided in the Supporting information.
Figure 2.
Natural atomic charges from population analysis (NBO), at the B3LYP/6–311+G(d) level of theory for the 1_ P 21/ n at crystal geometric conformation. The charge distributions are presented within a relative charge range of −1.000 (green) to +1.000 (light red).
Relevant data for the discussion of molecular geometry and conformation of the polymorphs is presented in Table 3 ▸; θA–C refers to the dihedral angle between the mean planes of the chromone and thiazole rings, θA–B to the dihedral angle between the best plane of the chromone and the plane defined by atoms OCN of the amide moiety, whereas θB–C refers to the dihedral angle between this plane and the best plane of the thiazole ring. Since the heteroaromatic rings are practically planar, the dihedral angle θA–C quantifies the degree of bend and/or twist between them and can be used for evaluation of the distortion of the molecule from planarity when one of the dihedrals, θA–B or θB–C, is relatively small. As seen, 1_ P 21/ n and 1_ P 21/ c_mol#2 are practically planar while 1_P21/c_mol#1 presents a slightly higher θA–C angle due to the rotation of the chromone ring with respect to the amide plane.
Table 3. Dihedral angles (°).
θA–C is the dihedral angle between the mean planes of the chromene and phenyl ring and the thiazole ring. θA–B is the dihedral angles between the mean planes of the chromone ring and the plane defined by the O2/C21/N2 atoms. θB–C is the dihedral angle between the mean planes of the thiazole ring and the plane defined by the O3/C41/N3 atoms.
Compound | θA–C° | θA–B° | θB–C° |
---|---|---|---|
1_P21/n | 3.1 (2) | 1.6 (8) | 4.5 (8) |
1_P21/c(mol#1) | 6.38 (9) | 5.12 (19) | 1.76 (12) |
1_P21/c(mol#2) | 3.42 (10) | 1.43 (10) | 2.01 (14) |
Supramolecular features
Molecular structure and conformation
In 1_
P
21/
n the molecules are linked by the C2—H2⋯O4i and C8—H8⋯N33i weak hydrogen bonds, Table 1 ▸, which form a chain of (13) rings runing parallel to the b-axis direction generated by the twofold screw axis at x =
and y =
, as depicted in Fig. 3 ▸.
Figure 3.
The chain of (13) rings running parallel to the b axis generated by the twofold screw axis at x = 1/4 and y = 1/4 as depicted for 1_
P
21/
n. H atoms not participating in hydrogen bonding have been omitted for the sake of clarity.
The molecules in 1_
P
21/
c are linked by alternating weakly hydrogen-bonded (10) rings formed by the hydrogen bonds C12—H12⋯O24ii and C25—H25⋯O13iv in one case and C22—H22⋯O14ii and C15—H15⋯O23ii in the other, Table 2 ▸. These link the molecules to form a chain of rings running parallel to [101], Fig. 4 ▸. Details of the π–π stacking are given in Table 4 ▸. In 1_
P
21/
n the molecules form a π–π stack that extends along the a axis. In 1_
P
21/
c, the two molecules in the asymmetric unit form a π–π stacked dimer (which guided the choice of asymmetric unit). In both compounds, any possible C—H⋯π contacts involve methyl hydrogen atoms with H⋯π distances in excess of 2.8 Å.
Figure 4.
The molecules in 1_
P
21/
c linked by alternating weakly hydrogen-bonded (10) rings that lead the molecules to form a chain of rings running parallel to [101]. H atoms not participating in hydrogen bonding have been omitted for the sake of clarity.
Table 4. Selected π–π contacts (Å).
CgI(J) = Plane number I(J), CgI_Perp = perpendicular distance of Cg(I) on ring J, CgJ_Perp = perpendicular distance of Cg(J) on ring I, slippage = distance between Cg(I) and perpendicular projection of Cg(J) on Ring I.
Compound | CgI | CgJ(aru) | Cg⋯Cg | CgI_Perp | CgJ_Perp | Slippage |
---|---|---|---|---|---|---|
1_P21/n | Cg1 | Cg2(x + 1, y, z) | 3.547 (3) | 3.3358 (18) | 3.3299 (19) | 1.222 |
1_P21/c | Cg3 | Cg4(x, y, z) | 3.6726 (17) | 3.2645 (13) | 3.3012 (12) | 1.609 |
Cg1 and Cg2 are the centroids of rings O1/C2–C4/C4A/C8A and C4A/C5–C8/C8A, respectively. Cg3 and Cg4 are the centroids of rings C14A/C15–C18/C18A and O21/C22–C24/C24A/C28A, respectively.
Hirshfeld surfaces
The Hirshfeld surfaces and two-dimensional fingerprint (FP) plots (Rohl et al., 2008 ▸ ) provide complementary information concerning the intermolecular interactions discussed above. They were generated using Crystal Explorer 3.1 (Wolff et al., 2012 ▸). The Hirshfeld surfaces, mapped over d norm (all scaled between −0.250 to 1.200) and the respective FP plots are depicted in Figs. 5 ▸ and 6 ▸ for 1_ P 21/ n and in Figs. 7 ▸ and 8 ▸ for 1_ P 21/ c; mol_#1 and mol_#2. Also in Figs. 5 ▸ and 9 ▸, the Hirshfeld surfaces mapped over the electrostatic potential (ESP) are depicted for both polymorphs. The contributions from various contacts, listed in Table 5 ▸, were selected by the partial analysis of those FP plots. Taking out the H⋯H contacts on the surface that are inherent to organic molecules, the most significant contacts can be divided in three groups: (i) the H⋯O/N contacts that correspond to some relevant C—H⋯O, C—H⋯N intermolecular interactions; (ii) the H⋯C/C⋯H contacts and (iii) C⋯C contacts that are related to π–π stacking. The structure has two carboxyl groups and a nitrogen atom of the thiazole that can act as acceptors for hydrogen bonding and a N—H (amide) that can act as donor. In spite of that, the N—H amide does not have a relevant role in the definition of the supramolecular structure but it is compromised in the intermolecular hydrogen bond.
Figure 5.
Views of the Hirshfeld surface mapped over d norm (left) and mapped over the electrostatic potential (right) for 1_ P 21/ n. The highlighted red spots on the top face of the surfaces indicate contact points with the atoms participating in the C—H⋯O/N intermolecular interactions whereas those on the middle of the surface corresponds to C⋯C contacts as a consequence of the π–π stacking. The electrostatic potential surface (ranging from −0.077 to 0.066) shows the complementary electronegative (red) and electropositive areas (blue) with molecules of the first shell. They depict the importance of the H2 and H8 atoms of the chromone ring that are located in the most electropositive area and their connection to O4 and N33. The methyl group presents also an electropositive region that complements with the thiozole environment near the sulfur atom.
Figure 6.
The FP plot for 1_ P 21/ n; the light-blue area in the middle of the FP plot is due to C⋯C contacts (7.1% of the area). The FP plot shows three sets of spikes pointing to southwest due to weak C⋯H contacts: the outer sharper ones are due to the H.·N contacts that involves the N(thiazole)⋯H8—C8(chromone) interaction followed by the spikes corresponding to O⋯H contacts that englobe the O4⋯H2_C2 contacts and the inner one is due to close S⋯H contacts
Figure 7.
Views of the Hirshfeld surface mapped over d norm for 1_ P 21/ c. The highlighted red spots on the top face of the surfaces indicate contact points with the atoms participating in the C—H⋯O/N intermolecular interactions. The red spot identified as a C12—H12⋯O24 contact in mol#1 is located on the hidden face of the surface.
Figure 8.
The FP plot for 1_ P 21/ c, mol#1 on left and mol#2 on right; The light-blue area in the middle of the FP plot at d e/d i ∼1.8 Å shows a higher frequency of the pixels that are due to C⋯C contacts (5.2% of the area for each molecule). The spikes pointing to southwest are due to weak O⋯H contacts. The asymmetric tails that both present are corresponding to N⋯H contacts in mol#1. Their asymmetry is due to the fact that they connect two molecules that are not related by crystallographic symmetry.
Figure 9.
The electrostatic potential surfaces for 1_ P 21/ c, mol#1 and mol#2. The surfaces show the complementary electronegative (red) and electropositive areas (blue) with molecules of the first shell (ranging from −0.077 to 0.066). The ESP is electronegative in the vicinity of oxo oxygen atoms and of the nitrogen atom of the thiazole ring while it is electropositive in the areas that surrounds the H2, H5 and H8 hydrogen atoms of the chromone ring.
Table 5. Percentages for the most relevant atom–atom contacts for the studied compounds.
Compound | H⋯H | H⋯O/O⋯H | H⋯N/N⋯H | H⋯S/S⋯H | H⋯C/C⋯H | C⋯C |
---|---|---|---|---|---|---|
1_P21/n | 31.8 | 19.0 | 8.7 | 6.3 | 15.2 | 7.1 |
1_P21/c | 29.6 | 19.1 | 8.6 | 7.7 | 17.6 | 5.2 |
1_P21/c | 34.6 | 13.2 | 6.6 | 7.1 | 18.4 | 5.2 |
P 21/ n polymorph
As seen in Fig. 3 ▸, in 1_ P 21/ n the oxygen atom O4 acts as acceptor for the hydrogen atom H2 of the chromone and the nitrogen atom N33 of the thiazole ring acts as acceptor for the H8 hydrogen atom of the chromone ring. Thus, the Hirshfeld surface of 1_ P 21/ n (mapped with d norm) shows two sets of complementary red spots in the lateral faces of the surface as highlighted in Fig. 5 ▸, left. The small red-spot areas facing the chromone plane are due to C⋯C contacts (that assume 7.1% of the contact area) and they correspond to the light-blue area in the middle of the FP plot, Fig. 6 ▸. The geometric parameters for these contacts are listed in Tables 3 ▸ and 5 ▸. The weak C⋯H contacts correspond to 15.2% of the surface area. The FP plot shows three sets of spikes pointing to southwest: the outer ones are due to the H⋯N contacts that involves the N(thiazole)⋯H8—C8(chromone) followed by the spikes corresponding to O⋯H contacts that englobes the O4⋯H2—C2 contacts and the inner one is due to close S⋯H contacts where the closest one is with the H atoms of the methyl group. A small red spot pointing to this group appears in the Hirshfeld surface, Fig. 5 ▸, left.
In Fig. 5 ▸ right, the mapping of the molecular electrostatic potential (ESP) in the context of crystal packing is shown. As the Hirshfeld surface partitions of the crystal space give non-overlapping volumes associated with each molecule these surfaces give a kind of ‘electrostatic complementarity’. The molecular ESP for P 21/ n reveals red regions of strongly negative electrostatic potential surrounding the two carbonyl regions and the azo region of the thiazole fragment. The blue region is electropositive and it is predominantly located in the chromone area near the H2 and H8 hydrogen atoms as well as in the methyl group of the thiazole. The remainder of the Hirshfeld surface is close to neutrality as seen by the grey regions. It is interesting to note that the mapped areas with electronegative potential corresponding to the areas covered by the atoms exhibiting negative natural atomic charges as computed by NBO (as seen in Fig. 2 ▸) with exception for the thiazole sulfur atom, which assumes a positive value by adiabatic gas-phase calculations, but gives a slightly negative electrostatic potential area at the Hirsfeld surface. The calculated partial charges show how the molecule would interact with an approaching proton and the molecular electrostatic potential is the potential energy that a proton would acquire at the surface, that is depending on the distance to the core nucleus of the molecule, suggesting that, in the crystal the sulfur surroundings experiences a deeper change in the eletrostatic potential gradient than that occurring in the remaining molecule, as compared with that of the adiabatic conditions.
Fig. 5 ▸ also highlights the electrostatic complementarity of the C—H⋯O/N contacts between the molecules. The electropositive (blue) patch above the chromone ring is in contact with the electronegative (red) regions around the carbonyl oxygen atom of the chromone O4 and the nitrogen atom of the thiazole ring N33 while the carbonyl oxygen atom of the amide O3 is pointing to the H5 hydrogen atom of the chromone ring. The electronegativity of this oxygen is lower than the electronegativity of the O4 of the chromone or the nitrogen atom of the thiazole N33. Thus the first shell molecular pairs are clearly associated with hydrogen bonds around the chromone ring periphery.
P 21/ c (mol#1 and #2) polymorph
The Hirshfeld surfaces printed over d norm for each molecule are shown in Fig. 7 ▸. Those surfaces show complementary red spots with each other; since mol#1 is linked to mol#2 and vice versa, they map pairs of dimers that connect the molecules in chains. Here, the hydrogen bonds that contribute to the linking of the mol#1 with mol#2 are the following: (i) the oxo oxygen atom of the chromone of mol#1 acts as acceptor for the H2 hydrogen atom of the chromone of mol#2 (O14⋯H22—C22) and vice versa (O24⋯H12—C12); (ii) the carboxyl oxygen atom of the amide in mol#1 links the hydrogen atom H5 of the chromone ring in mol#2 (O13⋯H25—C25) and vice versa (O23⋯H15—C15); (iii) the nitrogen atom of the thiazole in mol#1 acts as acceptor for H8 hydrogen atom of mol#2 (N133⋯H28—C28). The O13⋯H25—C25/ O23⋯H15—C15 bond pair was not present in 1_ P 21/ n polymorph while the remaining two were also observed. There is another pair of blue spots in the Hirshfeld surface of mol#1that are complementary in shape and they refer to the O13⋯H13C—C136 contact.
The FP plots for polymorph 1_ P 21/ c (mol#1 and #2) are shown in Fig. 8 ▸. The FP plots highlight the differences in distribution of close contacts between mol#1 and mol#2. The asymmetric tails that are both present correspond to N⋯H contacts in mol#1 and the sharp spikes are due to the O⋯H contacts. Their asymmetry is due to the fact that they connect two molecules that are not related by crystallographic symmetry. The sharper line in mol#1 FP that ends at about (1.2;0.9) corresponds to O⋯H contacts that mol#1 makes with mol#2. Those contacts relate to the ones given by the sharper line that ends at about (0.9; 1.2) in the FP of mol#2. It is noticeable the differences in sharpness of the O⋯H spikes presented in the FP plots 1_ P 21/ c when compared with the FP plot of the polymorph 1_ P 21/ n showing that in 1_ P 21/ c the O⋯H contacts are more directional and shorter. Those plots also reflect the differences regarding the close contacts between molecules: the light blue/green area in the middle of the FP plot in 1_ P 21/ n is less spread out and more intense that the area presented in the FP plot of 1_ P 21/ c suggesting that the C⋯C close contacts are more relevant in first polymorph.
Fig. 9 ▸ depicts the Hirshfeld surfaces mapped over the electrostatic potential and once again the complementary electrostatic nature of the contacts are clear from the figure. The ESP is electronegative in the vicinity of oxo oxygen atoms and of the nitrogen atom of the thiazole ring while it is electropositive in the areas that surrounds the H2, H5 and H8 hydrogen atoms of the chromone ring.
Synthesis and crystallization
Chromone-3-carboxylic acid, phosphorus(V) oxychloride, dimethylformamide (DMF) and 5-methylthiazol-2-amine were purchased from Sigma–Aldrich Química S·A. (Sintra, Portugal). All other reagents and solvents were pro analysis grade and used without additional purification. Thin-layer chromatography (TLC) was carried out on precoated silica gel 60 F254 (Merck) with layer thickness of 0.2 mm and ethyl acetate/petroleum ether as the mobile phase. The spots were visualized under UV detection (254 and 366 nm) and iodine vapour. Flash chromatography was performed using silica gel 60 0.2–0.5 or 0.040–0.063 mm (Carlo Erba Reagents).
Synthesis of N-(5-methylthiazol-2-yl)-4-oxo-4H-chromene-3-carboxamide
To a solution of chromone-3-carboxylic acid (500 mg, 2.6 mmol) in DMF (4 ml) POCl3 (241 ml, 2.6 mmol) was added. The mixture was stirred at room temperature for 30 min, with the formation in situ of the corresponding acyl chloride. Then, the 5-methylthiazol-2-amine was added. After 12 h, the mixture was diluted with dichloromethane (20 ml), washed with H2O (2 × 10 ml) and with saturated NaHCO3 solution (2 × 10 ml). The organic phase was dried with Na2SO4, filtered and concentrated under reduced pressure. The residue was purified by flash chromatography (20% ethyl acetate/petroleum ether) and N-(5-methylthiazol-2-yl)-4-oxo-4H-chromene-3-carboxamide was obtained as a solid (153 mg, 20%). 1H NMR (400 MHz, CDCl3) δ 12.43 (NH, s, 1H), 9.05 (H3,s, 1H), 8.35 (H5, dd, J = 8.0, 1.5 Hz, 1H), 7.80 (H7, ddd, J = 8.7, 7.2, 1.5 Hz, 1H), 7.59 (H8, dd, J = 8.7, 1.6 Hz, 1H), 7.54 (H6, ddd, J = 8.0, 7.2, 1.0 Hz, 1H), 7.17 (H34, q, J = 1.2 Hz, 1H), 2.43 (CH3, d, J = 1.2 Hz, 3H). 13C NMR (101 MHz, CDCl3) δ 176.7 C4), 163.0 (C2), 160.3 (C31), 156.2 (C32), 155.5 (C8a), 135.4 (C7), 135.2 (C34), 128.4 (C35), 126.9 (C5), 126.7 (C6), 124.1 (C4a, C), 118.6 (C8), 114.6 (C3), 11.7 (CH3). EM/IE m/z: 287 (M++1, 30), 286.0 (M +, 91), 174 (30), 173 (100
Refinement
Crystal data, data collection and structure refinement details are summarized in Table 6 ▸. Crystals of the title compound with different morphologies were found in the crystallized sample. In each case several attempts were made at obtaining crystals which gave the best available data set for both types of morphology; 1_ P 21/ n: the crystals were long needles, which could not be cut, as they shattered. The needle used showed slight streaking on the images. The high angle data were very weak, with significant drop in intensity from the lower angle reflections. These facts probably explain the relatively high R-factor in the refinement of this compound. The following reflections were omitted from the refinement: 0 0 2 and 0 1 1 that were obstructed by beamstop and 0 10 1, 0 11 1, 0 12 1, 0 11 3 as recommend by the PLAT934_ALERT_3_B because (I obs - I calc)/Σ w > 1.
Table 6. Experimental details.
P21/n | P21/c | |
---|---|---|
Crystal data | ||
Chemical formula | C14H10N2O3S | C14H10N2O3S |
M r | 286.30 | 286.30 |
Crystal system, space group | Monoclinic, P21/n | Monoclinic, P21/c |
Temperature (K) | 100 | 100 |
a, b, c (Å) | 4.8722 (4), 12.0436 (10), 21.9803 (16) | 7.4646 (5), 30.626 (2), 11.0869 (8) |
β (°) | 96.353 (8) | 93.232 (2) |
V (Å3) | 1281.86 (18) | 2530.6 (3) |
Z | 4 | 8 |
Radiation type | Mo Kα | Mo Kα |
μ (mm−1) | 0.26 | 0.26 |
Crystal size (mm) | 0.28 × 0.03 × 0.02 | 0.06 × 0.06 × 0.01 |
Data collection | ||
Diffractometer | Rigaku Saturn724+ | Rigaku Saturn724+ |
Absorption correction | Multi-scan (CrystalClear-SM Expert; Rigaku, 2012 ▸) | Multi-scan (CrystalClear-SM Expert; Rigaku, 2012 ▸) |
T min, T max | 0.814, 1.000 | 0.538, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13600, 2944, 1980 | 15726, 5716, 3733 |
R int | 0.084 | 0.090 |
(sin θ/λ)max (Å−1) | 0.651 | 0.650 |
Refinement | ||
R[F 2 > 2σ(F 2)], wR(F 2), S | 0.097, 0.223, 1.13 | 0.060, 0.153, 1.08 |
No. of reflections | 2944 | 5716 |
No. of parameters | 182 | 371 |
H-atom treatment | H-atom parameters constrained | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 1.15, −0.37 | 0.46, −0.37 |
1_
P
21/
c: the crystals were prismatic in habit. The following reflections were omitted from the refinement: 0 1 1 obstructed by beamstop, 1 8,
0 6 as recommend by the PLAT934_ALERT_3_B because (I
obs - I
calc)/Σ w > 10.
The hydrogen atoms attached to the carboxamide N atom in 1_ P 21/ n were treated as riding atoms with N—H = 0.88 Å and U iso(H) = 1.2U eq(N) while those in 1_ P 21/ c were refined. All other H atoms were treated as riding atoms with C—H(aromatic) = 0.95 Å C—H(methyl) = 0.98 Å with U iso(H) = 1.5U eq(C). The positions of the amino and methyl hydrogen-atom positions were checked on a final difference map.
Supplementary Material
Crystal structure: contains datablock(s) 1_P2~1~_n, 1_P2~1~_c, global. DOI: 10.1107/S2056989017009902/hb7689sup1.cif
Structure factors: contains datablock(s) 1_P2~1~_n. DOI: 10.1107/S2056989017009902/hb76891_P21_nsup2.hkl
Structure factors: contains datablock(s) 1_P2~1~_c. DOI: 10.1107/S2056989017009902/hb76891_P21_csup3.hkl
Gaseous phase quantum chemical calculations. DOI: 10.1107/S2056989017009902/hb7689sup4.pdf
Additional supporting information: crystallographic information; 3D view; checkCIF report
Acknowledgments
The authors thank the National Crystallographic Service, University of Southampton for the data collection and for their help and advice (Coles & Gale, 2012 ▸).
supplementary crystallographic information
N-(5-Methylthiazol-2-yl)-4-oxo-4H-chromene-3-carboxamide (1_P2~1~_n) . Crystal data
C14H10N2O3S | F(000) = 592 |
Mr = 286.30 | Dx = 1.484 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
a = 4.8722 (4) Å | Cell parameters from 3369 reflections |
b = 12.0436 (10) Å | θ = 2.5–27.5° |
c = 21.9803 (16) Å | µ = 0.26 mm−1 |
β = 96.353 (8)° | T = 100 K |
V = 1281.86 (18) Å3 | Needle, yellow |
Z = 4 | 0.28 × 0.03 × 0.02 mm |
N-(5-Methylthiazol-2-yl)-4-oxo-4H-chromene-3-carboxamide (1_P2~1~_n) . Data collection
Rigaku Saturn724+ diffractometer | 2944 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 1980 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.084 |
profile data from ω–scans | θmax = 27.5°, θmin = 2.5° |
Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2012) | h = −6→6 |
Tmin = 0.814, Tmax = 1.000 | k = −15→15 |
13600 measured reflections | l = −28→28 |
N-(5-Methylthiazol-2-yl)-4-oxo-4H-chromene-3-carboxamide (1_P2~1~_n) . Refinement
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.097 | H-atom parameters constrained |
wR(F2) = 0.223 | w = 1/[σ2(Fo2) + (0.0714P)2 + 3.9146P] where P = (Fo2 + 2Fc2)/3 |
S = 1.13 | (Δ/σ)max = 0.001 |
2944 reflections | Δρmax = 1.15 e Å−3 |
182 parameters | Δρmin = −0.37 e Å−3 |
N-(5-Methylthiazol-2-yl)-4-oxo-4H-chromene-3-carboxamide (1_P2~1~_n) . Special details
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
N-(5-Methylthiazol-2-yl)-4-oxo-4H-chromene-3-carboxamide (1_P2~1~_n) . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
S31 | 0.9829 (3) | 0.89007 (11) | 0.43688 (5) | 0.0282 (3) | |
O1 | −0.0148 (6) | 1.0107 (2) | 0.21301 (14) | 0.0251 (7) | |
O3 | 0.6328 (7) | 0.9809 (3) | 0.34453 (14) | 0.0297 (8) | |
O4 | 0.1136 (6) | 0.7088 (3) | 0.29518 (14) | 0.0252 (7) | |
N3 | 0.5557 (8) | 0.7992 (3) | 0.36084 (16) | 0.0245 (9) | |
H3 | 0.4531 | 0.7413 | 0.3489 | 0.029* | |
N33 | 0.8145 (9) | 0.6867 (4) | 0.43227 (18) | 0.0323 (10) | |
C2 | 0.1942 (10) | 0.9927 (4) | 0.2566 (2) | 0.0245 (10) | |
H2 | 0.3134 | 1.0535 | 0.2678 | 0.029* | |
C3 | 0.2503 (9) | 0.8961 (4) | 0.28596 (19) | 0.0221 (10) | |
C4 | 0.0784 (9) | 0.7999 (4) | 0.27017 (19) | 0.0211 (9) | |
C5 | −0.3234 (10) | 0.7340 (4) | 0.1989 (2) | 0.0253 (10) | |
H5 | −0.2989 | 0.6614 | 0.2154 | 0.030* | |
C4A | −0.1452 (9) | 0.8189 (4) | 0.22095 (19) | 0.0213 (10) | |
C6 | −0.5338 (10) | 0.7543 (4) | 0.1535 (2) | 0.0274 (11) | |
H6 | −0.6547 | 0.6959 | 0.1389 | 0.033* | |
C7 | −0.5705 (10) | 0.8606 (4) | 0.1288 (2) | 0.0272 (11) | |
H7 | −0.7176 | 0.8742 | 0.0976 | 0.033* | |
C8 | −0.3976 (10) | 0.9455 (4) | 0.1489 (2) | 0.0264 (10) | |
H8 | −0.4214 | 1.0179 | 0.1320 | 0.032* | |
C8A | −0.1864 (10) | 0.9224 (4) | 0.1947 (2) | 0.0237 (10) | |
C31 | 0.4964 (9) | 0.8976 (4) | 0.33283 (19) | 0.0224 (10) | |
C32 | 0.7694 (10) | 0.7843 (4) | 0.4073 (2) | 0.0283 (11) | |
C34 | 1.0346 (11) | 0.6953 (5) | 0.4779 (2) | 0.0357 (13) | |
H34 | 1.1015 | 0.6326 | 0.5012 | 0.043* | |
C35 | 1.1488 (10) | 0.7959 (4) | 0.4877 (2) | 0.0304 (11) | |
C351 | 1.3848 (10) | 0.8291 (5) | 0.5342 (2) | 0.0368 (13) | |
H35A | 1.4522 | 0.7638 | 0.5579 | 0.055* | |
H35B | 1.3213 | 0.8851 | 0.5618 | 0.055* | |
H35C | 1.5347 | 0.8601 | 0.5131 | 0.055* |
N-(5-Methylthiazol-2-yl)-4-oxo-4H-chromene-3-carboxamide (1_P2~1~_n) . Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
S31 | 0.0245 (7) | 0.0323 (7) | 0.0281 (6) | 0.0009 (6) | 0.0043 (5) | −0.0015 (5) |
O1 | 0.0252 (19) | 0.0153 (16) | 0.0340 (17) | −0.0006 (14) | −0.0002 (14) | 0.0028 (13) |
O3 | 0.030 (2) | 0.0216 (18) | 0.0369 (18) | −0.0055 (15) | 0.0001 (14) | −0.0001 (14) |
O4 | 0.0245 (19) | 0.0164 (16) | 0.0349 (17) | 0.0041 (14) | 0.0040 (14) | 0.0008 (13) |
N3 | 0.024 (2) | 0.020 (2) | 0.0289 (19) | 0.0002 (17) | 0.0021 (16) | −0.0030 (15) |
N33 | 0.035 (3) | 0.029 (2) | 0.032 (2) | 0.006 (2) | −0.0008 (18) | −0.0040 (17) |
C2 | 0.024 (3) | 0.017 (2) | 0.034 (2) | −0.002 (2) | 0.007 (2) | −0.0012 (18) |
C3 | 0.023 (3) | 0.017 (2) | 0.028 (2) | 0.0020 (19) | 0.0098 (18) | 0.0005 (17) |
C4 | 0.022 (2) | 0.015 (2) | 0.028 (2) | 0.0033 (19) | 0.0093 (18) | −0.0021 (17) |
C5 | 0.026 (3) | 0.020 (2) | 0.031 (2) | 0.001 (2) | 0.009 (2) | 0.0017 (18) |
C4A | 0.023 (3) | 0.015 (2) | 0.028 (2) | −0.0045 (19) | 0.0098 (19) | −0.0027 (17) |
C6 | 0.025 (3) | 0.025 (3) | 0.033 (2) | −0.003 (2) | 0.005 (2) | −0.0058 (19) |
C7 | 0.027 (3) | 0.027 (3) | 0.028 (2) | 0.001 (2) | 0.003 (2) | 0.0012 (18) |
C8 | 0.026 (3) | 0.021 (2) | 0.033 (2) | 0.005 (2) | 0.004 (2) | 0.0036 (18) |
C8A | 0.024 (3) | 0.017 (2) | 0.032 (2) | −0.0016 (19) | 0.010 (2) | −0.0032 (18) |
C31 | 0.023 (3) | 0.017 (2) | 0.028 (2) | 0.000 (2) | 0.0077 (19) | −0.0023 (17) |
C32 | 0.033 (3) | 0.026 (3) | 0.027 (2) | 0.004 (2) | 0.008 (2) | −0.0043 (18) |
C34 | 0.037 (3) | 0.042 (3) | 0.026 (2) | 0.020 (3) | 0.000 (2) | −0.002 (2) |
C35 | 0.025 (3) | 0.039 (3) | 0.028 (2) | 0.007 (2) | 0.006 (2) | −0.004 (2) |
C351 | 0.027 (3) | 0.048 (3) | 0.034 (3) | 0.004 (3) | 0.001 (2) | −0.005 (2) |
N-(5-Methylthiazol-2-yl)-4-oxo-4H-chromene-3-carboxamide (1_P2~1~_n) . Geometric parameters (Å, º)
S31—C32 | 1.726 (5) | C5—C6 | 1.371 (7) |
S31—C35 | 1.728 (5) | C5—C4A | 1.393 (6) |
O1—C2 | 1.336 (6) | C5—H5 | 0.9500 |
O1—C8A | 1.384 (5) | C4A—C8A | 1.379 (6) |
O3—C31 | 1.215 (5) | C6—C7 | 1.394 (7) |
O4—C4 | 1.231 (5) | C6—H6 | 0.9500 |
N3—C31 | 1.353 (6) | C7—C8 | 1.367 (7) |
N3—C32 | 1.387 (6) | C7—H7 | 0.9500 |
N3—H3 | 0.8800 | C8—C8A | 1.387 (7) |
N33—C32 | 1.306 (6) | C8—H8 | 0.9500 |
N33—C34 | 1.388 (6) | C34—C35 | 1.341 (7) |
C2—C3 | 1.344 (6) | C34—H34 | 0.9500 |
C2—H2 | 0.9500 | C35—C351 | 1.506 (7) |
C3—C4 | 1.449 (6) | C351—H35A | 0.9800 |
C3—C31 | 1.492 (7) | C351—H35B | 0.9800 |
C4—C4A | 1.466 (6) | C351—H35C | 0.9800 |
C32—S31—C35 | 88.8 (2) | C6—C7—H7 | 119.5 |
C2—O1—C8A | 118.1 (4) | C7—C8—C8A | 117.8 (4) |
C31—N3—C32 | 123.6 (4) | C7—C8—H8 | 121.1 |
C31—N3—H3 | 118.2 | C8A—C8—H8 | 121.1 |
C32—N3—H3 | 118.2 | C4A—C8A—O1 | 121.2 (4) |
C32—N33—C34 | 108.4 (4) | C4A—C8A—C8 | 123.2 (4) |
O1—C2—C3 | 125.7 (4) | O1—C8A—C8 | 115.6 (4) |
O1—C2—H2 | 117.2 | O3—C31—N3 | 122.9 (4) |
C3—C2—H2 | 117.2 | O3—C31—C3 | 122.4 (4) |
C2—C3—C4 | 119.7 (4) | N3—C31—C3 | 114.8 (4) |
C2—C3—C31 | 115.2 (4) | N33—C32—N3 | 120.2 (4) |
C4—C3—C31 | 125.0 (4) | N33—C32—S31 | 116.1 (4) |
O4—C4—C3 | 123.9 (4) | N3—C32—S31 | 123.7 (4) |
O4—C4—C4A | 121.6 (4) | C35—C34—N33 | 117.2 (5) |
C3—C4—C4A | 114.5 (4) | C35—C34—H34 | 121.4 |
C6—C5—C4A | 120.7 (4) | N33—C34—H34 | 121.4 |
C6—C5—H5 | 119.7 | C34—C35—C351 | 128.4 (5) |
C4A—C5—H5 | 119.7 | C34—C35—S31 | 109.4 (4) |
C8A—C4A—C5 | 117.5 (4) | C351—C35—S31 | 122.1 (4) |
C8A—C4A—C4 | 120.7 (4) | C35—C351—H35A | 109.5 |
C5—C4A—C4 | 121.8 (4) | C35—C351—H35B | 109.5 |
C5—C6—C7 | 120.0 (5) | H35A—C351—H35B | 109.5 |
C5—C6—H6 | 120.0 | C35—C351—H35C | 109.5 |
C7—C6—H6 | 120.0 | H35A—C351—H35C | 109.5 |
C8—C7—C6 | 120.9 (5) | H35B—C351—H35C | 109.5 |
C8—C7—H7 | 119.5 | ||
C8A—O1—C2—C3 | −1.8 (6) | C2—O1—C8A—C8 | −179.3 (4) |
O1—C2—C3—C4 | 0.9 (7) | C7—C8—C8A—C4A | −0.5 (7) |
O1—C2—C3—C31 | 179.9 (4) | C7—C8—C8A—O1 | 179.3 (4) |
C2—C3—C4—O4 | −179.2 (4) | C32—N3—C31—O3 | 2.9 (7) |
C31—C3—C4—O4 | 1.9 (7) | C32—N3—C31—C3 | −177.4 (4) |
C2—C3—C4—C4A | 1.1 (6) | C2—C3—C31—O3 | 1.5 (6) |
C31—C3—C4—C4A | −177.8 (4) | C4—C3—C31—O3 | −179.6 (4) |
C6—C5—C4A—C8A | −1.1 (6) | C2—C3—C31—N3 | −178.2 (4) |
C6—C5—C4A—C4 | 178.9 (4) | C4—C3—C31—N3 | 0.7 (6) |
O4—C4—C4A—C8A | 178.1 (4) | C34—N33—C32—N3 | −178.9 (4) |
C3—C4—C4A—C8A | −2.2 (6) | C34—N33—C32—S31 | −0.4 (5) |
O4—C4—C4A—C5 | −1.9 (6) | C31—N3—C32—N33 | 180.0 (4) |
C3—C4—C4A—C5 | 177.8 (4) | C31—N3—C32—S31 | 1.6 (6) |
C4A—C5—C6—C7 | 0.2 (7) | C35—S31—C32—N33 | −0.2 (4) |
C5—C6—C7—C8 | 0.5 (7) | C35—S31—C32—N3 | 178.3 (4) |
C6—C7—C8—C8A | −0.4 (7) | C32—N33—C34—C35 | 0.9 (6) |
C5—C4A—C8A—O1 | −178.5 (4) | N33—C34—C35—C351 | 179.2 (4) |
C4—C4A—C8A—O1 | 1.5 (6) | N33—C34—C35—S31 | −1.1 (6) |
C5—C4A—C8A—C8 | 1.2 (7) | C32—S31—C35—C34 | 0.7 (4) |
C4—C4A—C8A—C8 | −178.8 (4) | C32—S31—C35—C351 | −179.5 (4) |
C2—O1—C8A—C4A | 0.5 (6) |
N-(5-Methylthiazol-2-yl)-4-oxo-4H-chromene-3-carboxamide (1_P2~1~_n) . Hydrogen-bond geometry (Å, º)
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3···O4 | 0.88 | 1.96 | 2.687 (5) | 139 |
C2—H2···O4i | 0.95 | 2.38 | 3.030 (5) | 126 |
C8—H8···N33i | 0.95 | 2.56 | 3.455 (6) | 157 |
Symmetry code: (i) −x+1/2, y+1/2, −z+1/2.
(1_P2~1~_c). Crystal data
C14H10N2O3S | F(000) = 1184 |
Mr = 286.30 | Dx = 1.503 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71075 Å |
a = 7.4646 (5) Å | Cell parameters from 12722 reflections |
b = 30.626 (2) Å | θ = 2.3–27.5° |
c = 11.0869 (8) Å | µ = 0.26 mm−1 |
β = 93.232 (2)° | T = 100 K |
V = 2530.6 (3) Å3 | Plate, colourless |
Z = 8 | 0.06 × 0.06 × 0.01 mm |
(1_P2~1~_c). Data collection
Rigaku Saturn724+ diffractometer | 5716 independent reflections |
Radiation source: Sealed Tube | 3733 reflections with I > 2σ(I) |
Graphite Monochromator monochromator | Rint = 0.090 |
Detector resolution: 28.5714 pixels mm-1 | θmax = 27.5°, θmin = 2.3° |
profile data from ω–scans | h = −8→9 |
Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2012) | k = −37→39 |
Tmin = 0.538, Tmax = 1.000 | l = −14→14 |
15726 measured reflections |
(1_P2~1~_c). Refinement
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: mixed |
R[F2 > 2σ(F2)] = 0.060 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.153 | w = 1/[σ2(Fo2) + (0.0558P)2 + 1.3609P] where P = (Fo2 + 2Fc2)/3 |
S = 1.08 | (Δ/σ)max < 0.001 |
5716 reflections | Δρmax = 0.46 e Å−3 |
371 parameters | Δρmin = −0.37 e Å−3 |
(1_P2~1~_c). Special details
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
(1_P2~1~_c). Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
S131 | 0.61048 (10) | 0.46741 (2) | 0.38319 (7) | 0.01951 (19) | |
S231 | 0.12461 (10) | 0.35373 (2) | 0.43837 (8) | 0.0231 (2) | |
O11 | 0.7012 (3) | 0.25605 (6) | 0.53314 (18) | 0.0193 (5) | |
O14 | 0.4476 (3) | 0.30431 (6) | 0.22432 (19) | 0.0210 (5) | |
O21 | 0.1940 (3) | 0.13877 (6) | 0.52234 (19) | 0.0211 (5) | |
O24 | −0.0676 (3) | 0.19810 (6) | 0.2322 (2) | 0.0221 (5) | |
O131 | 0.6665 (3) | 0.38847 (6) | 0.49383 (19) | 0.0213 (5) | |
O231 | 0.1912 (3) | 0.27146 (7) | 0.5128 (2) | 0.0254 (5) | |
N13 | 0.5367 (3) | 0.38401 (8) | 0.3050 (2) | 0.0187 (6) | |
N23 | 0.0312 (3) | 0.27500 (8) | 0.3342 (3) | 0.0198 (6) | |
N133 | 0.4688 (4) | 0.44311 (8) | 0.1763 (2) | 0.0259 (6) | |
N233 | −0.0482 (3) | 0.33985 (8) | 0.2334 (2) | 0.0232 (6) | |
C12 | 0.6872 (4) | 0.29895 (9) | 0.5127 (3) | 0.0177 (6) | |
H12 | 0.7403 | 0.3180 | 0.5722 | 0.021* | |
C13 | 0.6033 (4) | 0.31749 (9) | 0.4141 (3) | 0.0166 (6) | |
C14 | 0.5230 (4) | 0.29002 (9) | 0.3192 (3) | 0.0161 (6) | |
C15 | 0.4645 (4) | 0.21215 (9) | 0.2591 (3) | 0.0182 (6) | |
H15 | 0.4032 | 0.2216 | 0.1863 | 0.022* | |
C14A | 0.5380 (4) | 0.24282 (9) | 0.3424 (3) | 0.0170 (6) | |
C16 | 0.4824 (4) | 0.16821 (9) | 0.2840 (3) | 0.0191 (7) | |
H16 | 0.4344 | 0.1474 | 0.2275 | 0.023* | |
C17 | 0.5706 (4) | 0.15392 (9) | 0.3917 (3) | 0.0209 (7) | |
H17 | 0.5808 | 0.1235 | 0.4078 | 0.025* | |
C18 | 0.6425 (4) | 0.18345 (9) | 0.4745 (3) | 0.0190 (6) | |
H18 | 0.7022 | 0.1739 | 0.5477 | 0.023* | |
C18A | 0.6252 (4) | 0.22810 (9) | 0.4478 (3) | 0.0163 (6) | |
C22 | 0.1841 (4) | 0.18235 (9) | 0.5132 (3) | 0.0204 (7) | |
H22 | 0.2399 | 0.1992 | 0.5768 | 0.024* | |
C23 | 0.1006 (4) | 0.20402 (9) | 0.4203 (3) | 0.0171 (6) | |
C24 | 0.0102 (4) | 0.18040 (10) | 0.3211 (3) | 0.0183 (6) | |
C25 | −0.0718 (4) | 0.10459 (9) | 0.2489 (3) | 0.0198 (6) | |
H25 | −0.1343 | 0.1165 | 0.1795 | 0.024* | |
C24A | 0.0162 (4) | 0.13245 (9) | 0.3338 (3) | 0.0185 (6) | |
C26 | −0.0676 (4) | 0.06024 (10) | 0.2662 (3) | 0.0245 (7) | |
H26 | −0.1286 | 0.0416 | 0.2090 | 0.029* | |
C27 | 0.0260 (4) | 0.04218 (10) | 0.3673 (3) | 0.0268 (7) | |
H27 | 0.0280 | 0.0114 | 0.3784 | 0.032* | |
C28 | 0.1153 (4) | 0.06891 (10) | 0.4511 (3) | 0.0240 (7) | |
H28 | 0.1811 | 0.0569 | 0.5190 | 0.029* | |
C28A | 0.1069 (4) | 0.11384 (9) | 0.4338 (3) | 0.0192 (6) | |
C132 | 0.5337 (4) | 0.42830 (9) | 0.2799 (3) | 0.0189 (6) | |
C134 | 0.4804 (4) | 0.48808 (10) | 0.1767 (3) | 0.0277 (8) | |
H134 | 0.4396 | 0.5048 | 0.1084 | 0.033* | |
C135 | 0.5518 (4) | 0.50732 (9) | 0.2774 (3) | 0.0210 (7) | |
C136 | 0.5782 (4) | 0.55514 (9) | 0.3022 (3) | 0.0264 (8) | |
H13A | 0.5545 | 0.5717 | 0.2273 | 0.040* | |
H13B | 0.7020 | 0.5603 | 0.3330 | 0.040* | |
H13C | 0.4953 | 0.5646 | 0.3624 | 0.040* | |
C137 | 0.6058 (4) | 0.36610 (9) | 0.4097 (3) | 0.0164 (6) | |
C232 | 0.0293 (4) | 0.32010 (9) | 0.3258 (3) | 0.0190 (6) | |
C234 | −0.0323 (4) | 0.38469 (10) | 0.2497 (3) | 0.0255 (7) | |
H234 | −0.0807 | 0.4047 | 0.1910 | 0.031* | |
C235 | 0.0546 (4) | 0.39855 (10) | 0.3522 (3) | 0.0249 (7) | |
C236 | 0.0899 (4) | 0.44428 (10) | 0.3955 (3) | 0.0302 (8) | |
H23A | 0.0396 | 0.4650 | 0.3353 | 0.045* | |
H23B | 0.2196 | 0.4490 | 0.4071 | 0.045* | |
H23C | 0.0337 | 0.4488 | 0.4723 | 0.045* | |
C237 | 0.1123 (4) | 0.25267 (10) | 0.4275 (3) | 0.0190 (6) | |
H13 | 0.499 (5) | 0.3673 (12) | 0.255 (3) | 0.036 (11)* | |
H23 | −0.012 (5) | 0.2620 (11) | 0.275 (3) | 0.032 (11)* |
(1_P2~1~_c). Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
S131 | 0.0231 (4) | 0.0159 (3) | 0.0195 (4) | 0.0003 (3) | 0.0008 (3) | −0.0002 (3) |
S231 | 0.0199 (4) | 0.0218 (4) | 0.0277 (5) | 0.0002 (3) | 0.0006 (3) | −0.0048 (3) |
O11 | 0.0246 (10) | 0.0178 (10) | 0.0152 (12) | −0.0001 (8) | −0.0014 (9) | 0.0000 (9) |
O14 | 0.0267 (11) | 0.0184 (10) | 0.0171 (12) | 0.0018 (8) | −0.0062 (10) | 0.0013 (9) |
O21 | 0.0243 (11) | 0.0237 (11) | 0.0152 (12) | 0.0017 (9) | −0.0007 (9) | 0.0011 (9) |
O24 | 0.0275 (11) | 0.0217 (11) | 0.0167 (12) | −0.0010 (9) | −0.0041 (10) | 0.0007 (9) |
O131 | 0.0270 (11) | 0.0198 (10) | 0.0167 (12) | −0.0008 (8) | −0.0016 (10) | −0.0025 (9) |
O231 | 0.0274 (11) | 0.0256 (11) | 0.0224 (13) | 0.0002 (9) | −0.0064 (10) | −0.0056 (10) |
N13 | 0.0240 (14) | 0.0158 (12) | 0.0159 (14) | −0.0007 (10) | −0.0016 (12) | −0.0013 (11) |
N23 | 0.0209 (13) | 0.0196 (13) | 0.0189 (15) | −0.0007 (10) | 0.0010 (12) | −0.0030 (11) |
N133 | 0.0344 (15) | 0.0225 (13) | 0.0202 (15) | 0.0010 (11) | −0.0038 (13) | 0.0032 (11) |
N233 | 0.0266 (13) | 0.0237 (13) | 0.0197 (15) | 0.0002 (11) | 0.0040 (12) | 0.0020 (11) |
C12 | 0.0201 (14) | 0.0166 (13) | 0.0164 (16) | −0.0023 (11) | 0.0006 (13) | −0.0027 (12) |
C13 | 0.0156 (13) | 0.0220 (14) | 0.0125 (15) | −0.0005 (11) | 0.0027 (12) | 0.0000 (12) |
C14 | 0.0154 (13) | 0.0192 (14) | 0.0138 (16) | 0.0025 (11) | 0.0015 (12) | −0.0011 (12) |
C15 | 0.0179 (14) | 0.0220 (14) | 0.0149 (16) | −0.0012 (11) | 0.0027 (13) | −0.0023 (12) |
C14A | 0.0153 (14) | 0.0210 (14) | 0.0151 (16) | 0.0006 (11) | 0.0053 (12) | −0.0003 (12) |
C16 | 0.0210 (14) | 0.0176 (14) | 0.0191 (17) | −0.0033 (11) | 0.0044 (13) | −0.0069 (12) |
C17 | 0.0229 (15) | 0.0171 (14) | 0.0232 (18) | 0.0006 (11) | 0.0061 (14) | −0.0005 (13) |
C18 | 0.0207 (14) | 0.0199 (14) | 0.0168 (16) | 0.0004 (11) | 0.0040 (13) | 0.0032 (12) |
C18A | 0.0153 (13) | 0.0241 (14) | 0.0096 (15) | −0.0015 (11) | 0.0011 (12) | −0.0043 (12) |
C22 | 0.0193 (14) | 0.0230 (15) | 0.0189 (17) | −0.0013 (12) | 0.0014 (13) | −0.0008 (13) |
C23 | 0.0141 (13) | 0.0235 (15) | 0.0138 (16) | 0.0002 (11) | 0.0023 (12) | 0.0005 (12) |
C24 | 0.0170 (14) | 0.0251 (15) | 0.0128 (15) | −0.0011 (12) | 0.0016 (12) | 0.0020 (12) |
C25 | 0.0190 (14) | 0.0238 (14) | 0.0163 (17) | −0.0013 (12) | −0.0013 (13) | −0.0008 (13) |
C24A | 0.0183 (14) | 0.0230 (15) | 0.0145 (16) | 0.0020 (11) | 0.0037 (13) | 0.0009 (12) |
C26 | 0.0276 (16) | 0.0228 (15) | 0.0231 (18) | −0.0022 (13) | 0.0018 (15) | −0.0024 (14) |
C27 | 0.0302 (17) | 0.0193 (15) | 0.031 (2) | 0.0003 (13) | 0.0061 (16) | 0.0029 (14) |
C28 | 0.0240 (15) | 0.0268 (16) | 0.0215 (18) | 0.0046 (13) | 0.0023 (14) | 0.0058 (14) |
C28A | 0.0198 (14) | 0.0219 (14) | 0.0163 (16) | −0.0002 (11) | 0.0043 (13) | −0.0002 (13) |
C132 | 0.0188 (14) | 0.0189 (14) | 0.0190 (17) | −0.0004 (11) | 0.0015 (13) | −0.0015 (13) |
C134 | 0.0374 (18) | 0.0185 (15) | 0.027 (2) | 0.0024 (13) | −0.0001 (16) | 0.0053 (14) |
C135 | 0.0196 (14) | 0.0195 (14) | 0.0242 (18) | 0.0015 (12) | 0.0047 (14) | 0.0040 (13) |
C136 | 0.0325 (17) | 0.0174 (15) | 0.030 (2) | −0.0011 (13) | 0.0071 (16) | 0.0035 (14) |
C137 | 0.0128 (13) | 0.0199 (14) | 0.0162 (17) | −0.0013 (11) | −0.0011 (12) | −0.0006 (12) |
C232 | 0.0187 (14) | 0.0212 (14) | 0.0172 (16) | −0.0003 (11) | 0.0023 (13) | −0.0006 (13) |
C234 | 0.0291 (17) | 0.0229 (15) | 0.0255 (19) | 0.0014 (13) | 0.0096 (15) | 0.0009 (14) |
C235 | 0.0200 (15) | 0.0202 (15) | 0.035 (2) | −0.0018 (12) | 0.0093 (15) | −0.0016 (14) |
C236 | 0.0242 (16) | 0.0253 (16) | 0.041 (2) | −0.0004 (13) | 0.0024 (16) | −0.0040 (16) |
C237 | 0.0158 (13) | 0.0240 (15) | 0.0172 (16) | 0.0012 (11) | 0.0010 (13) | −0.0035 (13) |
(1_P2~1~_c). Geometric parameters (Å, º)
S131—C132 | 1.732 (3) | C16—H16 | 0.9500 |
S131—C135 | 1.733 (3) | C17—C18 | 1.376 (4) |
S231—C235 | 1.736 (3) | C17—H17 | 0.9500 |
S231—C232 | 1.739 (3) | C18—C18A | 1.404 (4) |
O11—C12 | 1.336 (3) | C18—H18 | 0.9500 |
O11—C18A | 1.374 (3) | C22—C23 | 1.348 (4) |
O14—C14 | 1.244 (4) | C22—H22 | 0.9500 |
O21—C22 | 1.340 (3) | C23—C24 | 1.450 (4) |
O21—C28A | 1.377 (4) | C23—C237 | 1.495 (4) |
O24—C24 | 1.241 (4) | C24—C24A | 1.476 (4) |
O131—C137 | 1.223 (3) | C25—C26 | 1.372 (4) |
O231—C237 | 1.229 (4) | C25—C24A | 1.405 (4) |
N13—C137 | 1.359 (4) | C25—H25 | 0.9500 |
N13—C132 | 1.385 (4) | C24A—C28A | 1.389 (4) |
N13—H13 | 0.80 (4) | C26—C27 | 1.401 (5) |
N23—C237 | 1.354 (4) | C26—H26 | 0.9500 |
N23—C232 | 1.384 (4) | C27—C28 | 1.381 (4) |
N23—H23 | 0.82 (4) | C27—H27 | 0.9500 |
N133—C132 | 1.302 (4) | C28—C28A | 1.390 (4) |
N133—C134 | 1.380 (4) | C28—H28 | 0.9500 |
N233—C232 | 1.297 (4) | C134—C135 | 1.345 (5) |
N233—C234 | 1.389 (4) | C134—H134 | 0.9500 |
C12—C13 | 1.354 (4) | C135—C136 | 1.501 (4) |
C12—H12 | 0.9500 | C136—H13A | 0.9800 |
C13—C14 | 1.451 (4) | C136—H13B | 0.9800 |
C13—C137 | 1.490 (4) | C136—H13C | 0.9800 |
C14—C14A | 1.472 (4) | C234—C235 | 1.346 (5) |
C15—C16 | 1.379 (4) | C234—H234 | 0.9500 |
C15—C14A | 1.407 (4) | C235—C236 | 1.499 (4) |
C15—H15 | 0.9500 | C236—H23A | 0.9800 |
C14A—C18A | 1.381 (4) | C236—H23B | 0.9800 |
C16—C17 | 1.401 (4) | C236—H23C | 0.9800 |
C132—S131—C135 | 88.76 (15) | C28A—C24A—C25 | 118.3 (3) |
C235—S231—C232 | 88.58 (16) | C28A—C24A—C24 | 119.7 (3) |
C12—O11—C18A | 118.0 (2) | C25—C24A—C24 | 122.0 (3) |
C22—O21—C28A | 118.4 (2) | C25—C26—C27 | 120.6 (3) |
C137—N13—C132 | 124.6 (3) | C25—C26—H26 | 119.7 |
C137—N13—H13 | 116 (3) | C27—C26—H26 | 119.7 |
C132—N13—H13 | 119 (3) | C28—C27—C26 | 120.3 (3) |
C237—N23—C232 | 123.9 (3) | C28—C27—H27 | 119.9 |
C237—N23—H23 | 120 (3) | C26—C27—H27 | 119.9 |
C232—N23—H23 | 116 (3) | C27—C28—C28A | 118.6 (3) |
C132—N133—C134 | 109.0 (3) | C27—C28—H28 | 120.7 |
C232—N233—C234 | 109.1 (3) | C28A—C28—H28 | 120.7 |
O11—C12—C13 | 125.3 (3) | O21—C28A—C24A | 122.1 (3) |
O11—C12—H12 | 117.3 | O21—C28A—C28 | 115.8 (3) |
C13—C12—H12 | 117.3 | C24A—C28A—C28 | 122.1 (3) |
C12—C13—C14 | 119.7 (3) | N133—C132—N13 | 121.3 (3) |
C12—C13—C137 | 116.1 (3) | N133—C132—S131 | 115.8 (2) |
C14—C13—C137 | 124.1 (3) | N13—C132—S131 | 122.9 (2) |
O14—C14—C13 | 123.9 (3) | C135—C134—N133 | 117.5 (3) |
O14—C14—C14A | 121.3 (3) | C135—C134—H134 | 121.3 |
C13—C14—C14A | 114.7 (3) | N133—C134—H134 | 121.3 |
C16—C15—C14A | 119.3 (3) | C134—C135—C136 | 128.4 (3) |
C16—C15—H15 | 120.3 | C134—C135—S131 | 109.0 (2) |
C14A—C15—H15 | 120.3 | C136—C135—S131 | 122.6 (3) |
C18A—C14A—C15 | 119.0 (3) | C135—C136—H13A | 109.5 |
C18A—C14A—C14 | 119.8 (3) | C135—C136—H13B | 109.5 |
C15—C14A—C14 | 121.2 (3) | H13A—C136—H13B | 109.5 |
C15—C16—C17 | 120.8 (3) | C135—C136—H13C | 109.5 |
C15—C16—H16 | 119.6 | H13A—C136—H13C | 109.5 |
C17—C16—H16 | 119.6 | H13B—C136—H13C | 109.5 |
C18—C17—C16 | 120.7 (3) | O131—C137—N13 | 122.1 (3) |
C18—C17—H17 | 119.7 | O131—C137—C13 | 122.6 (3) |
C16—C17—H17 | 119.7 | N13—C137—C13 | 115.2 (3) |
C17—C18—C18A | 118.1 (3) | N233—C232—N23 | 121.4 (3) |
C17—C18—H18 | 120.9 | N233—C232—S231 | 115.9 (2) |
C18A—C18—H18 | 120.9 | N23—C232—S231 | 122.7 (2) |
O11—C18A—C14A | 122.4 (3) | C235—C234—N233 | 117.1 (3) |
O11—C18A—C18 | 115.6 (3) | C235—C234—H234 | 121.5 |
C14A—C18A—C18 | 122.0 (3) | N233—C234—H234 | 121.5 |
O21—C22—C23 | 124.7 (3) | C234—C235—C236 | 129.3 (3) |
O21—C22—H22 | 117.7 | C234—C235—S231 | 109.3 (2) |
C23—C22—H22 | 117.7 | C236—C235—S231 | 121.4 (3) |
C22—C23—C24 | 120.6 (3) | C235—C236—H23A | 109.5 |
C22—C23—C237 | 115.3 (3) | C235—C236—H23B | 109.5 |
C24—C23—C237 | 124.1 (3) | H23A—C236—H23B | 109.5 |
O24—C24—C23 | 124.2 (3) | C235—C236—H23C | 109.5 |
O24—C24—C24A | 121.4 (3) | H23A—C236—H23C | 109.5 |
C23—C24—C24A | 114.5 (3) | H23B—C236—H23C | 109.5 |
C26—C25—C24A | 120.1 (3) | O231—C237—N23 | 121.7 (3) |
C26—C25—H25 | 119.9 | O231—C237—C23 | 122.1 (3) |
C24A—C25—H25 | 119.9 | N23—C237—C23 | 116.1 (3) |
C18A—O11—C12—C13 | 0.1 (4) | C22—O21—C28A—C28 | −177.2 (2) |
O11—C12—C13—C14 | −1.3 (4) | C25—C24A—C28A—O21 | −178.9 (2) |
O11—C12—C13—C137 | −179.4 (2) | C24—C24A—C28A—O21 | −0.6 (4) |
C12—C13—C14—O14 | −178.1 (3) | C25—C24A—C28A—C28 | 1.0 (4) |
C137—C13—C14—O14 | −0.1 (4) | C24—C24A—C28A—C28 | 179.3 (2) |
C12—C13—C14—C14A | 1.5 (4) | C27—C28—C28A—O21 | 178.0 (2) |
C137—C13—C14—C14A | 179.4 (2) | C27—C28—C28A—C24A | −1.8 (4) |
C16—C15—C14A—C18A | −0.5 (4) | C134—N133—C132—N13 | 179.2 (2) |
C16—C15—C14A—C14 | 179.7 (2) | C134—N133—C132—S131 | 0.4 (3) |
O14—C14—C14A—C18A | 178.9 (2) | C137—N13—C132—N133 | 178.4 (3) |
C13—C14—C14A—C18A | −0.6 (4) | C137—N13—C132—S131 | −2.9 (4) |
O14—C14—C14A—C15 | −1.2 (4) | C135—S131—C132—N133 | −0.5 (2) |
C13—C14—C14A—C15 | 179.2 (2) | C135—S131—C132—N13 | −179.2 (2) |
C14A—C15—C16—C17 | 0.8 (4) | C132—N133—C134—C135 | −0.1 (4) |
C15—C16—C17—C18 | −0.5 (4) | N133—C134—C135—C136 | −179.3 (3) |
C16—C17—C18—C18A | −0.1 (4) | N133—C134—C135—S131 | −0.3 (4) |
C12—O11—C18A—C14A | 0.8 (4) | C132—S131—C135—C134 | 0.4 (2) |
C12—O11—C18A—C18 | −179.4 (2) | C132—S131—C135—C136 | 179.5 (2) |
C15—C14A—C18A—O11 | 179.6 (2) | C132—N13—C137—O131 | 2.8 (4) |
C14—C14A—C18A—O11 | −0.5 (4) | C132—N13—C137—C13 | −176.9 (2) |
C15—C14A—C18A—C18 | −0.1 (4) | C12—C13—C137—O131 | −5.8 (4) |
C14—C14A—C18A—C18 | 179.7 (2) | C14—C13—C137—O131 | 176.1 (3) |
C17—C18—C18A—O11 | −179.3 (2) | C12—C13—C137—N13 | 173.8 (2) |
C17—C18—C18A—C14A | 0.4 (4) | C14—C13—C137—N13 | −4.2 (4) |
C28A—O21—C22—C23 | −2.9 (4) | C234—N233—C232—N23 | 179.0 (2) |
O21—C22—C23—C24 | 1.0 (4) | C234—N233—C232—S231 | 0.5 (3) |
O21—C22—C23—C237 | −178.0 (2) | C237—N23—C232—N233 | 179.0 (3) |
C22—C23—C24—O24 | −179.2 (3) | C237—N23—C232—S231 | −2.6 (4) |
C237—C23—C24—O24 | −0.3 (4) | C235—S231—C232—N233 | −0.4 (2) |
C22—C23—C24—C24A | 1.2 (4) | C235—S231—C232—N23 | −178.9 (2) |
C237—C23—C24—C24A | −180.0 (2) | C232—N233—C234—C235 | −0.3 (4) |
C26—C25—C24A—C28A | 0.3 (4) | N233—C234—C235—C236 | −178.9 (3) |
C26—C25—C24A—C24 | −177.9 (3) | N233—C234—C235—S231 | 0.0 (3) |
O24—C24—C24A—C28A | 179.0 (3) | C232—S231—C235—C234 | 0.2 (2) |
C23—C24—C24A—C28A | −1.3 (4) | C232—S231—C235—C236 | 179.2 (2) |
O24—C24—C24A—C25 | −2.8 (4) | C232—N23—C237—O231 | 0.0 (4) |
C23—C24—C24A—C25 | 176.9 (2) | C232—N23—C237—C23 | −179.7 (2) |
C24A—C25—C26—C27 | −0.8 (4) | C22—C23—C237—O231 | −0.6 (4) |
C25—C26—C27—C28 | 0.0 (4) | C24—C23—C237—O231 | −179.5 (3) |
C26—C27—C28—C28A | 1.3 (4) | C22—C23—C237—N23 | 179.2 (2) |
C22—O21—C28A—C24A | 2.7 (4) | C24—C23—C237—N23 | 0.3 (4) |
(1_P2~1~_c). Hydrogen-bond geometry (Å, º)
D—H···A | D—H | H···A | D···A | D—H···A |
N13—H13···O14 | 0.80 (4) | 1.99 (4) | 2.671 (3) | 143 (4) |
C12—H12···O24i | 0.95 | 2.27 | 2.963 (4) | 129 |
C15—H15···O23ii | 0.95 | 2.43 | 3.353 (4) | 164 |
C136—H13C···O13iii | 0.98 | 2.51 | 3.449 (4) | 162 |
N23—H23···O24 | 0.82 (4) | 2.05 (3) | 2.697 (3) | 136 (3) |
C22—H22···O14ii | 0.95 | 2.19 | 2.999 (4) | 142 |
C25—H25···O13iv | 0.95 | 2.48 | 3.352 (4) | 153 |
Symmetry codes: (i) x+1, −y+1/2, z+1/2; (ii) x, −y+1/2, z+1/2; (iii) −x+1, −y+1, −z+1; (iv) x−1, −y+1/2, z−1/2.
Funding Statement
This work was funded by Portuguese Foundation for Science and Technology grants PEst-C/QUI/UI0081/2013 and UID/Multi/04546/2013.
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) 1_P2~1~_n, 1_P2~1~_c, global. DOI: 10.1107/S2056989017009902/hb7689sup1.cif
Structure factors: contains datablock(s) 1_P2~1~_n. DOI: 10.1107/S2056989017009902/hb76891_P21_nsup2.hkl
Structure factors: contains datablock(s) 1_P2~1~_c. DOI: 10.1107/S2056989017009902/hb76891_P21_csup3.hkl
Gaseous phase quantum chemical calculations. DOI: 10.1107/S2056989017009902/hb7689sup4.pdf
Additional supporting information: crystallographic information; 3D view; checkCIF report