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. Author manuscript; available in PMC: 2018 Oct 1.
Published in final edited form as: JAMA Dermatol. 2017 Oct 1;153(10):1026–1031. doi: 10.1001/jamadermatol.2017.2444

Association of Incident Amelanotic Melanoma with Phenotypic Characteristics, MC1R Status, and Prior Amelanotic Melanoma

Steven Vernali 1, Weston T Waxweiler 1, Patrick M Dillon 1, Peter A Kanetsky 1, Irene Orlow 1, Li Luo 1, Klaus J Busam 1, Anne Kricker 1, Bruce K Armstrong 1, Hoda Anton-Culver 1, Stephen B Gruber 1, Richard P Gallagher 1, Roberto Zanetti 1, Stefano Rosso 1, Lidia Sacchetto 1, Terence Dwyer 1, Anne E Cust 1, David W Ollila 1, Colin B Begg 1, Marianne Berwick 1, Nancy E Thomas 1, on behalf of the GEM Study Group
PMCID: PMC5650093  NIHMSID: NIHMS881202  PMID: 28746718

Abstract

Importance

We previously reported that survival is poorer from histopathologically amelanotic than pigmented melanoma because of more advanced stage at diagnosis. Identifying patients at risk of amelanotic melanoma might enable earlier diagnosis and improved survival; however, the phenotypic characteristics and underlying genetics associated with amelanotic melanoma are unknown.

Objective

To determine whether phenotypic characteristics, carriage of MC1R variants, and history of amelanotic melanoma are associated with histopathologically amelanotic melanoma.

Design

The Genes, Environment, and Melanoma (GEM) study is an international study that enrolled patients with incident primary cutaneous melanomas from 1998–2003.

Setting

Cases ascertained from population-based and hospital-based cancer registries.

Participants

The GEM participants included here were 2387 patients with data for phenotypes, MC1R genotype, and primary melanomas scored for histopathologic pigmentation. Of these 2387 patients with incident melanomas scored for pigmentation, 527 had prior primary melanomas also scored for pigmentation.

Main Outcome and Measures

Associations of phenotypic characteristics (freckles, nevi, phenotypic index) and MC1R status with incident amelanotic melanomas were evaluated using logistic regression models adjusted for age, sex, study center, and primary status (single or multiple primary melanoma); ORs and 95% CIs are reported. Association of histopathologic pigmentation between incident and prior melanomas was analyzed using an exact logistic regression model.

Results

In a multivariable model including phenotypic characteristics, absence of back nevi, presence of many freckles, and a sun-sensitive phenotypic index were independently associated with amelanotic melanoma (each P < .05). Carriage of MC1R variants was associated with amelanotic melanoma, but lost statistical significance in a model with phenotype. Further, patients with incident primary amelanotic melanomas were more likely to have had a prior primary amelanotic melanoma (OR = 4.62, 95% CI = 1.25–14.13) than those with incident primary pigmented melanomas.

Conclusions and Relevance

Absence of back nevi, presence of many freckles, a sun-sensitive phenotypic index, and prior amelanotic melanoma increase odds for development of amelanotic melanoma. An increased index of suspicion for melanoma in presenting non-pigmented lesions and more careful examination for signs of amelanotic melanoma during periodic skin examination in patients at increased odds of amelanotic melanoma might lead to earlier diagnosis and improved survival.

Introduction

Amelanotic melanoma is defined as melanoma without pigment on inspection1 or lacking melanin on histopathologic examination.2 Approximately 2–8% of melanomas are amelanotic.3 In the international, population-based, Genes, Environment, and Melanoma (GEM) study, we reported that survival is poorer from amelanotic than pigmented melanoma due to more advanced stage at diagnosis.2 Studies examining patient characteristics associated with amelanotic melanoma have been limited to demographic and genotypic descriptions.1,47 Amelanotic melanoma was associated with older age in GEM2 and other studies,1,4 and predominantly found in Caucasians.1,4 Associations with sex have been less consistent as previously discussed for GEM.2 Patients with amelanotic melanoma have been reported to carry MC1R variants linked to red hair (‘R’)5 and/or MITF E318K.6 A study of 118 melanomas found MC1R ‘R’ variants positively associated with amelanotic cases.7 Our goal was to compare phenotype, MC1R status, and history of amelanotic melanoma between amelanotic and pigmented melanoma patients.

Methods

Population

The GEM study included 3579 patients with incident primary cutaneous melanoma from 1998–2003 at eight sites in Australia, Canada, Italy, and the United States.8 Institutional review boards at each center reviewed and approved the study. Patients gave written, informed consent. GEM ascertained data for incident (index) and prior melanomas from cancer registries. This report includes 2387 (66.7% of 3579) GEM participants with data for phenotype, MC1R genotyping, and melanomas scored for histopathologic pigmentation. Of these 2387 patients with incident melanomas scored for pigmentation, 527 had prior primary melanomas also scored for histopathologic pigmentation. According to GEM protocol, in situ melanomas were incident melanomas if patients had prior invasive melanomas.

Self-administered questionnaires and telephone interviews were used to ascertain melanoma risk factors.8 Back nevi were counted by family using glossy colored guides to aid nevus identification.8 MC1R was sequenced from DNA from buccal swabs.9 Variants were classified by strength of association with red hair as in Taylor et al. (“R”: D84E, R142H, R151C, R160W, and D294H, all nonsense and insertion/deletion; “r”: all other variants; “wt”: consensus).10 Histopathologic pigmentation was determined by observation of melanin granules on light microscopy during centralized review of diagnostic slides for both index and prior primary melanomas.2 We previously reported that histopathologic pigmentation scoring had moderate interobserver agreement (kappa=0.48) and a significant association with clinical, pre-biopsy impression of pigmentation from pathology reports.2 A scalar phenotypic index was derived by combining hair color, eye color, and ability to tan as previously described.11 This index was dichotomized to indicate sun-resistant (scores of 0, 1, or 2) and sun-sensitive (scores of 3, 4, or 5) phenotypes.

Statistical Analysis

Among participants with incident single primary melanoma (SPM) or multiple primary melanoma (MPM), we estimated the odds ratios (OR) and 95% confidence intervals (95% CI) for associations of phenotypic characteristics (freckles, nevi, phenotypic index) and MC1R status using logistic regression models adjusted for study design features: age, sex, study center, and lesion status (SPM or index MPM). Multivariable models were developed including the three phenotypic characteristics alone or with MC1R status to identify factors independently associated with amelanotic melanoma. The same analyses with individual phenotypic characteristics and separated MC1R genotypes were also performed. Association of histopathologic pigmentation between incident and prior melanomas for patients with MPM was analyzed using exact logistic regression. Association with MITF E318K mutations was also analyzed using exact logistic regression. Statistical tests were two-sided with P <.05 considered significant. Data were analyzed using STATA version 13 (Stata-Corp LP, College Station, TX).

Results

Overall, 178 (7.5% of 2387) incident and 32 (6.1% of 527) prior primary melanomas were amelanotic (Table 1).

Table 1.

Characteristics of 2914 Primary Melanomas from 2387 Patients Scored for Histopathologic Pigmentation in the GEM Study

Incident Primary Melanoma Prior Primary Melanoma
Characteristic (n=2387)a (n=527)a
Sex
 Male 1322 (55.4) 354 (67.2)
 Female 1065 (44.6) 173 (32.8)
Age at diagnosis, y
 Mean (±SD) 58.3 ± 16.1 65.9 ± 12.9
 < 50 712 (29.8) 62 (11.8)
 50–69 966 (40.5) 222 (42.1)
 ≥ 70 709 (29.7) 243 (46.1)
Race/Ethnicity
 Caucasian 2380 (99.7) 526 (99.8)
 Non-Caucasian 7 (0.3) 1 (0.2)
Country
 Australia (New South Wales & Tasmania) 1096 (45.9) 394 (74.8)
 Canada (British Columbia & Ontario) 547 (22.9) 76 (14.4)
 Italy (Torino) 75 (3.1) 2 (0.4)
 United States (NC, NJ, MI, and CA) 669 (28.0) 55 (10.4)
Histopathologic pigmentation
 Pigmented 2209 (92.5) 495 (93.9)
 Amelanotic 178 (7.5) 32 (6.1)
Histologic subtype
 Superficial Spreading 1551 (65.0) 353 (67.0)
 Nodular 182 (7.6) 40 (7.6)
 Lentigo maligna 286 (12.0) 87 (16.5)
In-situ 161 (6.7) 0 (0.0)
 Unclassified/otherb 207 (8.7) 47 (8.9)
Anatomic Site
 Head, neck 437 (18.3) 84 (15.9)
 Trunk, pelvis 1040 (43.6) 248 (47.1)
 Upper extremities 424 (17.8) 94 (17.8)
 Lower extremities 486 (20.4) 101 (19.2)
Breslow thickness, mmc (n=2,380) (n=525)
 Median (IQR), mm 0.6 (0.8) 0.7 (0.7)
In-situ 167 (7.0) 0 (0.0)
 0.01 to 1.00 1518 (63.8) 365 (69.5)
 1.01 to 2.00 405 (17.0) 95 (18.1)
 2.01 to 4.00 195 (8.2) 49 (9.3)
 >4.00 95 (4.0) 16 (3.1)

Abbreviations: GEM = Genes, Environment, and Melanoma; IQR = interquartile range; SD = standard deviation.

a

Data are given as number (percentage) of melanomas.

b

Other includes acral lentiginous, spindle cell, nevoid, and Spitzoid melanomas.

c

Counts do not sum to the total number of study subjects due to missing data.

Phenotypic Characteristics and MC1R Variants

In 2387 participants with incident melanomas (Table 2), absence of back nevi (OR = 1.76, 95% CI = 1.18–2.65; P = .006), presence of many freckles (OR = 1.76, 95% CI = 1.17–2.65; P = .007), a sun-sensitive phenotypic index (OR = 1.57, 95% CI = 1.14–2.18; P = .006), and carriage of MC1R variants (OR = 1.70, 95% CI = 1.04–2.78 for r/r, R/r, or R/R genotypes; P for trend = .01) were associated with amelanotic melanoma, adjusting for study design features.

Table 2.

Phenotypic Characteristics and MC1R Status in Relationship to Histopathologic Pigmentation in Incident Primary Melanomas from 2387 patients in the GEM Study

Amelanotic vs. Pigmented Melanoma
Pigmented Melanoma Amelanotic Melanoma Study Design Featuresb Study Design Features + Phenotypec Study Design Features + Phenotype + MC1Rd
Characteristics (n = 2209)a (n = 178)a OR (95% CI) P Valuee OR (95% CI) P Valuee OR (95% CI) P Valuee
Phenotype
Back nevi
 Present 1904 (86.2) 139 (78.1) 1 [Reference] 0.006 1 [Reference] 0.01 1 [Reference] 0.01
 Absent 305 (13.8) 39 (21.9) 1.76 (1.18–2.65) 1.71 (1.14–2.57) 1.68 (1.12–2.53)
Freckles
 None to few 1912 (86.6) 143 (80.3) 1 [Reference] 0.007 1 [Reference] 0.03 1 [Reference] 0.10
 Many 297 (13.4) 35 (19.7) 1.76 (1.17–2.65) 1.58 (1.04–2.39) 1.44 (0.93–2.22)
Phenotypic indexf
 Sun-resistant phenotypic index 989 (47.1) 68 (38.2) 1 [Reference] 0.006 1 [Reference] 0.02 1 [Reference] 0.03
 Sun-sensitive phenotypic index 1109 (52.9) 110 (61.8) 1.57 (1.14–2.18) 1.48 (1.07–2.07) 1.44 (1.03–2.01)
Genetics
MC1Rg
 wt/wt 357 (16.2) 23 (12.9) 1 [Reference] - - 1 [Reference]
 r/wt or R/wt 980 (44.4) 69 (38.8) 1.17 (0.71–1.93) - - 1.16 (0.70–1.92)
 r/r, R/r, or R/R 872 (39.5) 86 (48.3) 1.70 (1.04–2.78) - - 1.43 (0.86–2.39)
P value for trend 0.01 - - 0.13

Abbreviations: CI, confidence interval; GEM, genes, environment, and melanoma; MC1R, melanocortin 1 receptor; MPM, multiple primary melanoma; OR, odds ratio; SPM, single primary melanoma.

a

Data are given as number (percentage) of melanomas unless otherwise specified.

b

Adjusted for study design features: sex, age, study center, and lesion status (SPM or index MPM)

c

Adjusted for study design features, freckling, back moles, and phenotypic index.

d

Adjusted for study design features and all characteristics displayed in the table.

e

P values were calculated according to logistic regression models and P values for trend were calculated including MC1R categories as ordinal variables.

f

Phenotypic index was calculated by additively combining: hair color (black or dark brown=0; light brown or blonde=1; red=2), eye color (brown=0; grey, green, or hazel=1; blue=2), and ability to tan (deeply or moderately=0; occasionally or none=1). Those with index scores of 0,1, or 2 were categorized as having a sun-resistant phenotypic index. Patients with index scores of 3, 4, or 5 were categorized as having a sun-sensitive phenotypic index.

g

MC1R “R”: D84E, R142H, R151C, R160W, and D294H, all nonsense and insertion/deletion; “r”: all other variants; “wt”: consensus.

Including the phenotypic characteristics in one multivariable model, absence of back nevi (OR = 1.71, 95% CI = 1.14–2.57; P = .01), presence of many freckles (OR = 1.58, 95% CI = 1.04–2.39; P = .03), and a sun-sensitive phenotypic index (OR = 1.48, 95% CI = 1.07–2.07; P = .02) were significantly associated with amelanotic melanoma.

Adding MC1R to the multivariable model of phenotypic characteristics, absence of back nevi (OR = 1.68, 95% CI = 1.12–2.53; P = .01) and a sun-sensitive phenotypic index (OR = 1.44, 95% CI = 1.03–2.01; P = .03) remained statistically significant, but not presence of many freckles or MC1R. Attenuation of the association with MC1R was explained by the addition of freckles and phenotypic index to the model. Despite the attenuation, the point estimate for the r/r, R/r, R/R variants was similar to that for freckling and phenotypic index.

Results for individual phenotypic characteristics and separate MC1R genotypes are in Table S1. Table S2 shows MITF E318K was not associated with amelanotic melanoma in our study (OR = 0.86, 95% CI = 0.22–2.37; P = .82).

Incident and Prior Melanoma Pigmentation

Table 3 shows associations of incident amelanotic melanoma with the pigmentation state of the previous melanoma in 527 MPM participants with pigmentation scored for each melanoma. Of 24 patients with incident amelanotic melanomas, 5 (20.8%) had prior amelanotic melanomas. For 503 patients with incident pigmented melanomas, 27 (5.4%) had prior amelanotic melanomas. Patients with an incident amelanotic melanoma were more likely to have a prior amelanotic melanoma than those with an incident pigmented melanoma (OR = 4.62, 95% CI = 1.25–14.13; P = .01).

Table 3.

Association of Histopathologic Pigmentation Between Incident and Prior Melanomas in 527 Multiple Primary Melanoma Patients in the GEM Studya

Incident Primary Melanoma
Pigmented Melanoma Amelanotic Melanoma Amelanotic vs. Pigmented Prior Primary Melanoma
Prior Primary Melanoma n (%)b n (%)b OR (95%CI) P Valuec
Pigmented Melanoma 476 (94.6) 19 (79.2) 1 [Reference] 0.01
Amelanotic Melanoma 27 (5.4) 5 (20.8) 4.62 (1.25–14.13)

Abbreviations: CI, confidence interval; OR, odds ratio.

a

Includes only patients with second or higher order primary melanomas scored for histopathologic pigmentation

b

Data are given as number (percentage) of melanomas.

c

P value was calculated using an exact logistic regression model.

Discussion

Our findings suggest that patients with prior amelanotic melanomas remain at risk of pigmented melanoma, but have increased odds of developing subsequent amelanotic melanomas. Further, we found independent associations of absence of back nevi, presence of many freckles, and a sun-sensitive phenotypic index with amelanotic melanoma. MC1R, a genetic determinant of phenotype (especially freckling and red hair),9 was also associated with amelanotic melanoma. This association lost statistical significance in a model with phenotype, but the point estimate for the r/r, R/r, R/R variants was similar to that for the correlated phenotype variables. Thus, the association of MC1R with amelanotic melanoma may not be entirely accounted for by phenotype.

Although clinicians may expect that patients with sun-sensitive phenotypes or history of amelanotic melanoma are more likely to develop amelanotic melanoma, we are unaware of another study examining amelanotic melanoma’s associations with phenotype or prior amelanotic melanoma. One report consistent with GEM described three amelanotic melanomas in a patient with red hair, fair skin, many freckles, and few nevi.6 Also similar to GEM, Ghiorzo et al.7 found an association of MC1R with amelanotic melanoma.

Strengths of our study include the large, international, population-based study design; centralized dermatopathology review; and objective definition of pigmentation. A limitation is that melanoma pigmentation may be misclassified due to interobserver variability. While we did not have pre-biopsy pigmentation, we previously reported that the clinical, pre-biopsy impression of pigmentation extracted from pathology reports was significantly associated with histopathologic pigmentation in a subset of GEM patients.2

Conclusions

Increased index of suspicion for melanoma in presenting non-pigmented lesions and careful periodic screening for signs of amelanotic and pigmented melanoma in patients at increased odds of amelanotic melanoma might lead to earlier diagnosis and improved survival. Dermoscopy and confocal microscopy, useful for diagnosis of amelanotic melanoma,12,13 could be helpful. Research to determine whether other genetic polymorphisms associated with pigmentary characteristics and/or nevi14,15 are associated with amelanotic melanoma is warranted.

Supplementary Material

Supplementary Tables

Key Points.

Question

Are phenotypic characteristics, MC1R variants, and prior amelanotic melanoma associated with amelanotic melanoma?

Findings

Absence of back nevi, presence of many freckles, a sun-sensitive phenotype, and prior amelanotic melanoma were associated with development of amelanotic melanoma. MC1R was associated with amelanotic melanoma but this association lost significance in a model with phenotype.

Meaning

Prior amelanotic melanoma and the phenotypes associated with it should raise clinicians’ index of suspicion for amelanotic melanoma when examining a suspicious but non-pigmented skin lesion, and clinicians might also use these characteristics to prompt periodic, meticulous screening of non-pigmented as well as pigmented skin lesions.

Acknowledgments

Funding/Support: This study was supported in part by the National Cancer Institute (R01CA112243 to N.E.T, U01CA83180 and R01CA112524 to M.B., R01CA098438 to C.B.B, P30CA016086 to Norman E. Sharpless, P30CA014089 to S.B.G, and P30CA008748 to Craig B. Thompson); National Institute of Environmental Health Sciences (P30ES010126 to James A. Swenberg); and University of Sydney Medical Foundation Program grant to B.K.A. A.E.C received fellowships from the NHMRC and Cancer Institute NSW.

We are indebted to the GEM Study Group: Coordinating Center, Memorial Sloan Kettering Cancer Center, New York, NY (USA): Marianne Berwick (PI, currently at the University of New Mexico), Colin Begg, Ph.D. (co-PI), Irene Orlow, Ph.D., M.S. (co-Investigator), Klaus J. Busam, M.D. (Dermatopathologist), Pampa Roy, Ph.D. (Senior Laboratory Technician), Himali Patel, M.S. (Senior Laboratory Technician); University of New Mexico, Albuquerque: Marianne Berwick, M.P.H., Ph.D. (PI), Li Luo, Ph.D. (Biostatistician), Susan Paine, M.P.H. (Data Manager). Study Centers: The University of Sydney and The Cancer Council New South Wales, Sydney, Australia: Anne E. Cust, Ph.D. (PI), Bruce K. Armstrong M.D. Ph.D. (former PI), Anne Kricker Ph.D., (former Co-PI); Menzies Institute for Medical Research University of Tasmania, Hobart, Australia: Alison Venn (current PI), Terence Dwyer (PI, currently at University of Oxford, United Kingdom), Paul Tucker (Dermatopathologist); British Columbia Cancer Research Centre, Vancouver, Canada: Richard P. Gallagher, M.A. (PI), Cancer Care Ontario, Toronto, Canada: Loraine D. Marrett, Ph.D. (PI), Lynn From, M.D. (Dermatopathologist); CPO, Center for Cancer Prevention, Torino, Italy: Roberto Zanetti, M.D (PI), Stefano Rosso, M.D., M.Sc. (co-PI); University of California, Irvine, CA: Hoda Anton-Culver, Ph.D. (PI); University of Michigan, Ann Arbor, MI: University of Michigan, Ann Arbor: Stephen B. Gruber, M.D., M.P.H., Ph.D. (PI, currently at University of Southern California, Los Angeles, CA), Shu-Chen Huang, M.S., M.B.A. (co-Investigator, joint at USC-University of Michigan); New Jersey Department of Health and Senior Services, Trenton, NJ ; University of North Carolina, Chapel Hill, NC: Nancy E. Thomas, M.D., Ph.D. (PI), David W. Ollila, M.D. (co-Investigator), Pamela A. Groben, M.D. (Dermatopathologist), David C. Gibbs, B.S. (Research Assistant); University of Pennsylvania, Philadelphia, PA: Timothy R. Rebbeck, Ph.D. (former PI), Peter A. Kanetsky, M.P.H., Ph.D. (PI, currently at H. Lee Moffitt Cancer Center & Research Institute, Tampa, Florida); UV data consultants: Julia Lee Taylor, Ph.D. and Sasha Madronich, Ph.D., National Centre for Atmospheric Research, Boulder, CO.

Footnotes

Financial Disclosure: None reported.

Author Contributions: Dr. Nancy E. Thomas and Mr. Steven Vernali had full access to all of the data in the study and take responsibility for the integrity of the data and the accuracy of the data analysis. Study concept and design: Thomas, Kanetsky, Orlow, Berwick. Acquisition, analysis, and interpretation of data: Thomas, Vernali, Waxweiler, Dillon, Kanetsky, Orlow, Luo, Berwick. Drafting of the manuscript: Vernali, Thomas, Waxweiler, Dillon, Kanetsky, Orlow, Luo, Berwick. Critical revision of the manuscript for important intellectual content: Vernali, Thomas, Waxweiler, Dillon, Kanetsky, Orlow, Luo, Busam, Kricker, Armstrong, Anton-Culver, Gruber, Gallagher, Zanetti, Rosso, Sacchetto, Dwyer, Cust, Ollila, Begg, Berwick, Thomas. Statistical analysis: Vernali, Thomas, Waxweiler, Kanetsky, Orlow, Luo, Berwick. Obtained funding: Thomas, Berwick, Begg, Armstrong, Cust. Administrative, technical, or material support: Thomas, Berwick, Armstrong, Anton-Culver, Gruber, Gallagher, Zanetti, Dwyer. Study supervision: Thomas.

Funding/Sponsor was involved? NO

Design and conduct of the study? NO

Collection, management, analysis, and interpretation of data? NO

Preparation, review, or approval of the manuscript? NO

Decision to submit the manuscript for publication? NO

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