Table 3.

. Gene Ontology Biological processes (GOBP) categories of differentially methylated evens at protein-coding genes with FDR <0.2 from a gene set analysis (GSA) using GOseq.

GOBPID	Count	P-Value	FDR	Term
GO:0048705	15	1.09E-06	0.009173675	skeletal system morphogenesis
GO:0001501	22	1.46E-06	0.009173675	skeletal system development
GO:0048568	19	1.28E-05	0.044713028	embryonic organ development
GO:0048598	22	1.43E-05	0.044713028	embryonic morphogenesis
GO:0060216	5	1.81E-05	0.044713028	definitive hemopoieosis
GO:0060348	11	2.27E-05	0.044713028	bone development
GO:0048562	15	2.49E-05	0.044713028	embryonic organ morphogenesis
GO:0048706	10	2.87E-05	0.045099637	embryonic skeletal system development
GO:0048513	61	3.31E-05	0.04625517	organ development
GO:0048704	8	4.50E-05	0.056693684	embryonic skeletal system morphogenesis
GO:0048534	18	5.75E-05	0.065834809	haematopoietic or lymphoid organ development
GO:0002520	18	8.40E-05	0.088121986	immune system development
GO:0061448	13	0.0001003	0.096219373	connective tissue development
GO:0009888	38	0.0001070	0.096219373	tissue development
GO:0009887	28	0.00012346	0.103615701	organ morphogenesis
GO:0051216	11	0.000207756	0.163464742	cartilage development
GO:0007389	17	0.000229614	0.170035874	pattern specification process
GO:0043009	21	0.000256876	0.17171298	chordate embryonic development
GO:0009790	30	0.000259159	0.17171298	embryo development
GO:0009792	21	0.000274174	0.172578713	embryo development ending in birth
GO:0003002	14	0.000299586	0.179594414	regionalization