Abstract
Bioorthogonal catalysis broadens the functional possibilities of intracellular chemistry. Effective delivery and regulation of synthetic catalytic systems in cells is challenging due to the complex intracellular environment and catalyst instability. Here, we report the fabrication of protein-sized bioorthogonal nanozymes through the encapsulation of hydrophobic transition metal catalysts into the monolayer of water-soluble gold nanoparticles. The activity of these catalysts can be reversibly controlled by binding a supramolecular cucurbit[7]uril ‘gate-keeper’ onto the monolayer surface, providing a biomimetic control mechanism that mimics the allosteric regulation of enzymes. The potential of this gated nanozyme for use in imaging and therapeutic applications was demonstrated through triggered cleavage of allylcarbamates for pro-fluorophore activation and propargyl groups for prodrug activation inside living cells.
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Regulation of bioorthogonal catalysis in living systems is challenging because of the complex intracellular environment. Now, the activity of protein-sized bioorthogonal nanozymes has been regulated by binding a supramolecular cucurbit[7]uril ‘gate-keeper’ onto the monolayer surface, providing controlled activation of pro-fluorophores and prodrugs inside living cells for imaging and therapeutic applications.
Bioorthogonal chemistry1–3 is a promising strategy for the intracellular generation of molecules for therapeutic4 and imaging applications5,6 unattainable through naturally occurring bioprocesses7,8. Transition metal catalysts (TMCs) are excellent candidates for use in bioorthogonal processes9–11, rapidly catalyzing transformations that cannot be performed via enzymatic processes12–15. However, the application of TMC-mediated reactions in living cells is challenging due to issues of biocompatibility, water solubility, catalyst stability, and rapid efflux of catalysts from living cells12,13.
Loading of TMCs into nanomaterial scaffolds can be used to provide water solubility and a protective environment for TMCs. Bradley et al.13 and Unciti-Broceta et al.16 used palladium-catalyst loaded polystyrene beads to catalyze reactions such as Suzuki-Miyaura coupling and alkylcarbamate/N-propargyl cleavage inside and outside cells, respectively. The particles used in these studies, however, were far larger than normal proteins, creating potential interference in cellular processes. Additionally, these particles did not provide the capability of mimicking allosteric regulation of enzymes, a key component in cellular homeostasis17. The integration of biomimetic size and controlled response into a bioorthogonal catalysis platform would provide new avenues for both therapeutics and integrated biological/abiotic cellular systems.
We have developed a family of gold nanoparticles (AuNPs) based on ~2 nm core size18–20 that feature biomimetic size, possess diverse functional properties21,22, and are efficiently transported into cells23,24. We report here the use of this AuNP structural motif to encapsulate25 hydrophobic TMCs, providing NP_Ru (Fig. 1) or NP_Pd. The resulting nanozymes26–30 feature surface moieties that can be reversibly functionalized using host-guest chemistry31,32 to provide NP_Ru_CB[7] or NP_Pd_CB[7]. Complexation of the monolayer terminal functionalities by cucurbit[7]uril (CB[7])33–35 in this system blocks access to the catalytic site, resulting in essentially complete inhibition of catalytic activity. The gatekeeper molecules36,37 can then be released from the AuNPs using competitive guests38, restoring catalytic activity (Fig. 1). The efficacy of this system was demonstrated in solution and in cells through two applications: 1) the gated generation of a fluorophore through deallylation of a non-fluorescent precursor and 2) the gated activation of a prodrug by cleaving the propargyl functionality that has been introduced to block the active side of original drug. Such gated control of catalysis has not been demonstrated in cells to date and is important because it allows the potential for multiple useful capabilities, such as switching on therapeutics at target tissues and regulation of activity to maintain homeostasis for long-term therapeutics. To date, supramolecular machines based on gating strategy were designed to entrap the guest molecules in the pore reservoir of silica nanoparticles and their release was studied mostly in test tubes39 or intracellularly37 in a few studies however, no gated control of substrate activation was demonstrated inside cells.
Results and discussion
Design and synthesis of nanozymes
We used AuNPs with core diameters of ~2 nm as the scaffold for our catalysts, with the goal of creating protein-sized systems with functional monolayers. The monolayer coverage of the NP nanoreactor scaffold features three crucial components: 1) a hydrophobic alkane segment for catalyst encapsulation, 2) a tetra(ethylene glycol) unit to provide biocompatibility40, and 3) a dimethylbenzylammonium group to impart water solubility and bind the nontoxic CB[7] gatekeeper41,42 (Fig. 1f).
We chose ruthenium-catalyzed deallylation43,44 as a model bioorthogonal process to regenerate the fluorescence from an allylcarbamate caged fluorophore in solution and inside cells. To this end, we immobilized [Cp*Ru(cod)Cl] (Cp* = pentamethylcyclopentadienyl, cod = 1,5-cyclooctadiene) in the hydrophobic portion of the AuNP monolayer to provide NP_Ru. Transmission electron microscopy (TEM) images of the AuNPs before and after encapsulation of the catalyst indicated that no aggregation or decomposition of AuNP structure occurred after encapsulation (Supplementary Fig. S9), a result that was also confirmed by dynamic light scattering (Supplementary Fig. S10). The amount of ruthenium catalyst relative to AuNP was quantified using inductively coupled plasma mass spectrometry (ICP-MS, Supplementary Fig. S11)45 of 101Ru relative to 197Au, with 42 ± 3 catalyst molecules encapsulated per AuNP.
Catalytic efficacy of NP_Ru nanozymes in solution
The catalytic efficacy of the nanozymes in solution was assessed using the allylcarbamate cleavage of bis-N,N′-allyloxycarbonyl rhodamine 110 (Fig. 1g). Fluorescence started to increase immediately for NP_Ru after the addition of substrate, while no significant change in fluorescence was observed for NP_Ru_CB[7] (Supplementary Fig. S12). After 24 h bright fluorescence was observed using the NP_Ru nanozymes (Fig. 2d). However, only minimal fluorescence was observed for the NP_Ru_CB[7], which originated from the background of caged fluorophore as observed at 0 h (Supplementary Fig. S13). As expected no reaction occurred with the control particle NP that lacked embedded catalysts (Supplementary Fig. S14), as the [Cp*Ru(cod)Cl] was insoluble in water, preventing study of the catalyst alone. Additionally, fluorogenesis of NP_Ru and NP_Ru_CB[7] taken after 5 days confirmed the long term stability of the gated catalysis system in solution (Supplementary Fig. S15).
Supramolecular control of catalysis through CB[7] complexation
With catalytic efficacy of the nanozymes established, we next explored CB[7] complexation of the ligand headgroups to act as the gatekeepers in NP_Ru_CB[7]. Isothermal titration calorimetry (ITC)46 indicated that 60 ± 5 CB[7] molecules bound per NP, with KD = 11.3 ± 2.4 μM (Supplementary Fig. S16). Complexation with CB[7] effectively shut down catalysis in NP_Ru_CB[7], as minimal fluorogenesis was observed with nanozymes after addition of CB[7] (Fig. 2d). Kinetic studies (Fig. 2a, c) verified this observation, indicating essentially complete inhibition of catalysis by CB[7] complexation. This inhibition was reversible: after the addition of 1-adamantylamine (ADA), a competitive guest molecule for CB[7], catalytic activity was completely restored (Fig. 2b, c). Control studies of the free catalyst in an acetone/water solution showed that catalyst efficiency was unaffected by either CB[7] or ADA (Supplementary Fig. S17), demonstrating that particle-CB[7] gating controls the catalytic process.
Kinetic analysis of the NP_Ru nanozymes using Lineweaver–Burk analysis
The analogy between controlled regulation of the nanozymes and their enzyme counterparts was explored through kinetic analysis of the nanozymes using Lineweaver–Burk analysis (LBA)47, 48. These studies indicate that CB[7] complexation results in competitive inhibition of reactor activity (Fig. 3 and Supplementary Fig. S18), presumably by blocking access to the [Cp*Ru(cod)Cl] “active site”. Little change in activity was observed for CB[7]:NPs ratios greater than ~80:1, consistent with the ITC results (Supplementary Fig. S19 and S20). Likewise, the value of Ki from the LBA (11.4 ± 4.3 μM) is essentially identical to the affinity obtained by ITC (11.3 ± 2.4 μM). Taken together, these studies demonstrate the direct correlation between CB[7]-AuNP equilibrium binding processes and kinetic behavior of the nanozyme.
Catalytic efficacy of NP_Pd nanozymes in solution
To demonstrate the versatility of this catalysis platform, we chose a second catalyst: hydrophobic palladium catalyst: (1,1′- Bis(diphenylphosphino) ferrocene)palladium(II)dichloride. This palladium catalyst was encapsulated in the hydrophobic portion of the AuNP monolayer to provide NP_Pd. The amount of palladium catalyst relative to AuNP was quantified using ICP-MS of 106Pd relative to 197Au. It was calculated that 32 ± 1 catalyst molecules encapsulated per AuNP (Supplementary Fig. S21).
Similar to NP_Ru nanozyme, NP_Pd can also cleave the allylcarbamate of bis-N,N′-allyloxycarbonyl rhodamine 11013. After 6 h, fluorescence was generated for the NP_Pd (Supplementary Fig. S22), however; NP_Pd_CB[7] showed only a slight background fluorescence of caged fluorophore (Supplementary Fig. S22). Kinetic studies for NP_Pd and NP_Pd_CB[7] indicated the inhibition of catalysis by CB[7] complexation. Followed by the addition of ADA, the catalytic activity of nanozyme was restored (Supplementary Fig. S23). These findings supported that gated catalysis is efficiently working for different catalyst systems.
Supramolecular regulation of catalysis inside living cells
Having characterized the activity and gating of nanozyme catalysis in solution, we next studied the intracellular behavior of these nanozymes using HeLa cells. The cellular uptake of the nanozymes was quantified by tracking [197Au] using ICP-MS, with NP_Ru_CB[7] particles demonstrating a slightly more efficient (1.7-fold greater) uptake than uncomplexed NP-Ru (Supplementary Fig. S24). Significantly, no toxicity was observed at the concentrations used for our studies with either NP or NP_Ru (Supplementary Fig. S25).
We then probed the catalytic activity of the nanozymes inside the living cells. HeLa cells were incubated with the nanozyme for 24 h in serum-containing media and then washed multiple times to remove adsorbed particles on the cell surface. Fresh media containing the substrate was added, followed by 24 h incubation and washing. As shown in Fig. 4a, flow cytometry indicated that there was a significant increase in fluorescence with NP_Ru relative to the control NP. Confocal microscopy (Fig. 4d) showed that the cells treated with NP_Ru had bright punctate fluorescence. This fluorescence co-localized with LysoTracker® (Supplementary Fig. S26), indicating that the deallylation reaction occurred in the endosomes and cleaved fluorophore stayed in the endosomes. This outcome is expected given the endosomal uptake pathway49,50 previously observed for similar nanoparticles, coupled with the limited membrane permeability of the cleaved dye51.
We next investigated the intracellular gating of the nanozyme by CB[7] complexation. Flow cytometry showed that the NP_Ru_CB[7] particles were completely inhibited, indicating intracellular stability of the complexes (Fig. 4a, e). Treatment with ADA (400 μM) restored nanozyme activity, with even higher activity observed in the cells after treatment with ADA than was observed with NP_Ru (Fig. 4b). This increased catalytic efficiency is echoed in the micrograph (Fig. 4f) and potentially arises from enhanced protection of the catalyst by the CB[7] coverage in serum and inside the cell.
We further tested the control of gated catalysis through the treatment of cells with free CB[7]. First, HeLa cells were incubated with the NP_Ru for 24 h and then after multiple washings, free CB[7] in serum-containing media was treated to cells for 24 h before the addition of the substrate. A significant decrease in the fluorescence was observed indicating the complexation of CB[7] with NP_Ru and blocking access to the catalytic site (Supplementary Fig. S27).
Palladium catalyst embedded nanozymes were likewise used for intracellular controlled activation of the caged fluorophore. NP_Pd effectively performed the intracellular catalysis, while as expected the gated NP_Pd_CB[7] did not. ADA addition into cells that were previously incubated with NP_Pd_CB[7] resulted in the recovery of intracellular catalysis (Supplementary Fig. S28).
Intracellular prodrug activation using NP_Pd nanozymes
Bioorthogonal activation of prodrugs using TMC-loaded nanomaterials was recently demonstrated by Unciti-Broceta and co-workers16 Although prodrug activation was successfully achieved, no gated control over this activation was shown. We have bioorthogonally demonstrated gated-activation of a prodrug inside cells using NP_Pd/NP_Pd_CB[7]. 5-fluorouracil (5FU) is a chemotherapeutic drug used in cancer treatment including breast, stomach, pancreatic, and skin cancers. Although it has an established history in cancer treatment, it shows toxic side effects due to its limited safety profile52. These side effects can be eliminated or at least minimized if a prodrug strategy coupled with gated-intracellular catalysis were to be available. By this gated catalysis, activation of prodrugs will be achieved on demand upon reaching to site of action thus eliminating the off target effects.
5FU can be converted into a prodrug via functionalization on its N1 position, as modification at this position will block the activity of 5FU and render it non-toxic16. We introduced a propargyl moiety to turn 5FU into an inactive prodrug ‘pro-5FU’ (Fig. 5a). First, through palladium mediated chemocatalysis the propargyl masking unit is intracellularly cleaved to yield 5FU followed by the enzymatic reactions to convert 5FU into the cytotoxic nucleotidic fluorouridine monophosphate via functionalization at the N1 position53. These active metabolites work through misincorporation into RNA and DNA molecules and irreversibly inhibit the nucleotide synthetic enzyme thymidylate synthase to disrupt cell functions and induce cytotoxicity. Overall, this process is an example of the integration of chemocatalysis and enzymatic biochemistry in a one-pot chemical sequence54,55.
Cleavage of propargyl group on pro-5FU (1 mM) in the presence of NP_Pd (100 nM) was monitored using matrix-assisted laser desorption/ionization (MALDI)-MS. Most of the pro-5FU was converted into 5FU after 48 h (Supplementary Fig. S29). After confirming the cleavage, the toxicity profile of 5FU and pro-5FU were investigated by performing a cell viability assay. Cells were treated with various concentrations from 10 nM to 1 mM. While 5-FU showed toxicity as concentration increased, pro-5FU retained high cellular viability at all concentrations studied (Fig. 5b).
Cell viability studies for prodrug system in the presence of nanozymes were carried out using HeLa cells in a 96 well plate. Cells were first incubated with NP_Pd or NP_Pd_CB[7] at a concentration of 100 nM in serum-containing media for 24 h. Then, after multiple washings, cells were incubated with different concentrations of pro-5FU (0, 0.05, 0.1, 0.25, 0.5 and 1 mM) while some of the cells that were incubated with NP_Pd_CB[7], were treated with pro-5FU and ADA at the same time. Cells that were incubated with NP_Pd and NP_Pd_CB[7] + ADA showed elevated toxicity at higher concentration of pro-5FU while NP_Pd_CB[7] retained ~100 % cell viability even at higher concentration of pro-5FU (Fig. 5c). As expected, pro-5FU was not toxic at any concentrations used. Likewise, NP_Pd, NP_Pd_CB[7], and NP_Pd_CB[7] + ADA at zero pro-drug concentration were not toxic indicating toxicity was coming from the intracellular conversion of pro-5FU into 5FU using gated-catalysis but not the nanozyme itself.
In conclusion, we have described the fabrication of a AuNP based, bioorthogonal nanozyme that uses transition metal catalysis to effect transformations of imaging and therapeutic relevance without biological counterparts. These catalysts were built upon a platform featuring biomimetic size and surface functionality, making them attractive components for both in vitro and in vivo applications. The ability to control the activity of these nanozymes through host-guest interactions of CB[7] molecules with the benzyl headgroup of the AuNP ligands likewise provides an efficient and reversible means of regulating catalysis. This bioorthogonal catalysis can be employed not only in therapeutic applications such as the activation of prodrugs at the site of action but also in treating non-cancerous chronic diseases where the goal is not to kill the cell but to kill an infective agent or restore a malfunctioning pathway. This gated platform enables the introduction of an inactive reservoir of a bioorthogonal catalyst that would remain dormant between successive administrations of the substrate, thus reducing potential interference of the catalyst with cell constituents and protecting the metal from poisoning, release, systemic distribution and/or clearance. Furthermore, our protein-sized system demonstrates biomimetic behavior and yet performs totally abiotic chemistry that can be controlled intracellularly through a very simple host-guest feature. This system integrates biomimetic and bioorthogonal design elements to provide a new platform for imaging and therapeutic applications as well as pharmacological treatments integrating biological activity with man-made synthetic tools.
Methods
Synthesis of the ligands and the AuNPs (Fig. 1f) for the nanozyme are described in the Supplementary Information (Supplementary Fig. S1–S8). Details of the particle characterization methods, catalyst encapsulation process, ICP-MS sample preparation, kinetic studies and additional cell culture experiments can be found in the Supplementary Information.
Catalyst encapsulation into the monolayer of AuNPs
The catalyst ([Cp*Ru(cod)Cl] or 1,1′-Bis(diphenylphosphino) ferrocene)palladium(II)dichloride) and the AuNP were dissolved in an acetone/water mixture and then the acetone was slowly removed by evaporation. During the evaporation the catalyst was encapsulated in the particle monolayer, with excess catalyst precipitating and removed by filtration. The AuNPs were purified by multiple filtrations and dialyzed against water to remove free catalysts. The amount of encapsulated catalyst was measured by ICP-MS by tracking 101Ru relative to 197Au for NP_Ru and 106Pd relative to 197Au for NP_Pd.
Kinetic studies of nanozymes using Lineweaver–Burk analysis
In the titration of the reaction rate of the nanozyme using the CB[7], 400 nM of the AuNPs, 80 μM of the substrate, and set molar ratios of CB[7]s were used in sodium phosphate buffer (5 mM, pH 7.4). For the Lineweaver-Burk analysis, 400 nM of the AuNPs, 2, 4, 20, 40, and 80 μM of the substrate, and 0, 4, 16, and 80 μM of CB[7] were used. The concentration of the products was calculated based on the fluorescence standard curve of rhodamine 110 (Supplementary Fig. S30).
Catalytic activity of the nanozymes inside living cells
HeLa cells were grown in a cell culture flask using low-glucose Dulbecco’s modified Eagle medium supplemented with 10% fetal bovine serum at 37°C in a humidified atmosphere of 5% CO2. For flow cytometry and confocal analysis, HeLa cells were seeded at 20,000 and 80,000 cells in 0.5 mL per well in 24-well plates and 1 ml in confocal dish 24 h prior to the experiment. During the experiment old media were replaced by 200 nM of the nanozymes and the nanozyme-bound CB[7] in serum-containing media and the cells were incubated for 24 h and washed with PBS buffer three times. 100 μM of the substrates were then added to the cells and incubated for 24 h. The cells were then washed with PBS three times. In the case of ADA treatment, cells were treated with 0.4 mM ADA solution (0.5 mL) for 24 h. For the cytometry, a Becton Dickinson LSR cytometer was used. A total of 10,000 events per sample were analyzed. A530/30 bandpass filter (FITC) was used for rhodamine 110. Confocal microscopy images were obtained on a Zeiss LSM 510 Meta microscope by using a 63× objective. The settings of the confocal microscope were as follows unless otherwise specified: green channel: λex=488 nm and λem=BP 505–530 nm; red channel: λex=543 nm and λem=LP 650 nm. Emission filters: BP=band pass, LP=high pass. LysoTracker® Red DND-99 was obtained from Invitrogen. 100 nM of LysoTracker® was incubated with cells for 30 min prior to the microscopy experiments.
Cytotoxicity measurements of 5FU versus pro-5FU
HeLa cells were seeded at 10,000 in 0.2 mL per well in 96-well plates 24 h prior to the experiment. Cells were washed with PBS buffer and then treated with 11 different concentrations ranging from 1 nM to 1 mM of 5FU or pro-5FU in triplicate. After 72 h of incubation, the cells were then completely washed off with PBS buffer three times and 10% Alamar Blue in serum containing media was added to each well (220 μL) and further incubated at 37 °C for 4 h. The cell viability was then determined by measuring the fluorescence intensity at 570 nm using a SpectraMax M5 microplate spectrophotometer.
Intracellular prodrug activation
HeLa cells were seeded at 10,000 in 0.2 mL per well in 96-well plates 24 h prior to the experiment. Cells were washed off and incubated with NP_Pd (100 nM) or NP_Pd_CB[7] (100 nM) in 10% serum containing media. After 24 h, cell were washed with PBS buffer three times and treated with pro-5FU at a concentration of 0, 0.05, 0.1, 0.25, 0.5 and 1 mM for 48 h. Some cells treated with NP_Pd_CB[7] were incubated with both pro-5FU and ADA (0.05 mM). After 48 h of incubation, the cells were then completely washed off and 10% Alamar Blue in serum containing media was added to each well (220 μL) and further incubated at 37 °C for 4 h. The cell viability was then determined by measuring the fluorescence intensity at 570 nm using a SpectraMax M5 microplate spectrophotometer.
Supplementary Material
Acknowledgments
This work was supported by a grant from the NIH (EB014277). T.M. is grateful to the Japan Society for the Promotion of Sciences for a Postdoctoral Fellowship for Research Abroad and for the Strategic Young Researcher Overseas Visits Program for Accelerating Brain Circulation. We thank Professor Lyle Isaacs (University of Maryland) for providing cucurbit[7]uril.
Footnotes
Author contributions
G.Y.T., Y.J., and V.M.R. conceived and designed the experiments. G.Y.T., Y.J., B.D., T.M., R.M., R.D., S.T.K., Y,-C.Y., B.Y., and S.H. performed the experiments. All authors analyzed and discussed the data. G.Y.T., Y.J., B.D., and V.M.R. co-wrote the paper. V.M.R. revised the paper.
G.Y.T. and Y.J. contributed equally to this work.
Additional information
The authors declare no competing financial interests. Supplementary information that accompanies this paper is at www.nature.com/naturechemistry.
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