Table 8.
Overview of the phage draft genomes and bins of PYO97 indicating the most likely taxonomic group they belong to. PYO97_10_85… and PYO97_10_3… correspond to PYO97_10_85.139.47.48.59.38.5.35.15.78.55.44.14 and PYO97_10_3.8.10.28.42, respectively.
| Bin Name | # Contigs | Size (bp) | Closest Relative in the Database | ANI (%) | Most Likely Taxonomic Group |
|---|---|---|---|---|---|
| PYO97 | |||||
| PYO97 near-complete draft genomes with high resemblance to reference phage and counterpart in PYO2014. (Category 1) | |||||
| PYO97_4 | 1 | 149,561 | Enterococcus phage EFDG1 (NC_029009.1) | 89.77 | Caudovirales; Myoviridae; unclassified Myoviridae |
| PYO97_10_85… | 13 | 344,749 | Escherichia phage PBECO 4 (NC_027364.1) | 90.848 | Caudovirales; Myoviridae; unclassified Myoviridae |
| PYO97_11 | 1 | 72,136 | Pseudomonas phage PEV2 (NC_031063.1) | 97.37 | Caudovirales; Podoviridae; N4likevirus; unclassified N4likevirus |
| PYO97_15 | 1 | 44,667 | Pseudomonas phage TL (NC_023583.1) | 92.02 | Caudovirales; Podoviridae; Luz24virus; Pseudomonas virus TL |
| PYO97_16 | 1 | 130,932 | Staphylococcus phage Sb-1 (HQ163896.1) | 96.86 | Caudovirales; Myoviridae; Spounavirinae; Spo1virus; unclassified SPO1-like viruses |
| PYO97_29 | 1 | 169,029 | Shigella phage SHFML-11 (NC_030953.1) | 89.959 | Caudovirales; Myoviridae; Tevenvirinae; T4virus; unclassified T4virus |
| PYO97 near-complete draft genomes with high resemblance to reference phage, but no counterpart in PYO2014. (Category 2) | |||||
| PYO97_7 | 7 | 166,126 | Klebsiella phage vB KpnM KpV477 (NC_031087.1) | 88.66 | Caudovirales; Myoviridae |
| PYO97_8 | 1 | 38,419 | Enterobacteria phage 285P (NC_015249.1) | 79.568 | Caudovirales; Podoviridae; Autographivirinae; T7virus; unclassified T7-like viruses |
| PYO97_22.3.14 | 3 | 109,428 | Salmonella phage Shivani (NC_028754.1) | 95.33 | Caudovirales; Siphoviridae; T5virus; Salmonella virus Shivani |
| PYO97_24 | 1 | 44,541 | Proteus phage PM 85 (NC_027379.1) | 92.726 | Caudovirales; Podoviridae; unclassified Podoviridae |
| PYO97_32 | 3 | 47,235 | Salmonella phage vB SenS-Ent1 (HE775250.1) | 86.967 | unclassified |
| PYO97 partial draft genome with low/medium resemblance to reference phage and counterpart in PYO2014. (Category 3) | |||||
| PYO97_27.21 | 2 | 37,487 | Yersinia phage phi80-18 (NC_019911.1) | 22.104 | Caudovirales; Podoviridae |
| PYO97 partial draft genomes with no resemblance to reference phage and no counterpart in PYO2014. (Category 4) | |||||
| PYO97_1 | 1 | 11,445 | Escherichia phage vB EcoM AYO145A (NC_028825.1) | 10.99 | Caudovirales; Myoviridae |
| PYO97_5 | 3 | 29,155 | Pseudomonas phage vB Pae-TbilisiM32 (JQ307386.1) | 68.72 | Caudovirales; Podoviridae; Autographivirinae |
| PYO97_9 | 1 | 10,727 | Salmonella phage BP63 (NC_031250.1) | 19.779 | Caudovirales; unclassified Caudovirales |
| PYO97_10_3… | 5 | 343,801 | Escherichia phage 121Q (NC_025447.1) | 28.408 | Caudovirales; Myoviridae |
| PYO97_13 | 1 | 37,843 | Hamiltonella virus APSE1 (NC_000935.1) | 9.777 | Caudovirales; Podoviridae |
| PYO97_17.30 | 7 | 90,209 | Salmonella phage SSE121 (NC_027351.1) | 58.832 | Caudovirales; Myoviridae; Vequintavirinae |
| PYO97_20 | 1 | 90,712 | Cronobacter phage vB CsaP GAP52 (NC_019402.1) | 19.54 | Caudovirales; Podoviridae |
| PYO97_25 | 1 | 25,293 | Proteus phage pPM_01 (NC_028812.1) | 41.01 | Caudovirales; Siphoviridae; unclassified Siphoviridae |
| PYO97_26 | 5 | 171,908 | Cronobacter phage S13 (NC_028773.1) | 45.28 | Caudovirales; Myoviridae; unclassified Myoviridae |
| PYO97_28 | 5 | 30,952 | Salmonella phage 21 (NC_029050.1) | 21.43 | Caudovirales; Myoviridae |
| PYO97_31 * | 3 | 69,885 | Salmonella phage Felix 01 (NC_005282.1) | 75.359 | Caudovirales; Myoviridae; Ounavirinae |
| PYO97 collapsed bins. (Category 5) | |||||
| PYO97_12 | 5 | 55,452 | Enterococcus phage IME-EFm5 (NC_028826.1) | 69.288 | Caudovirales; Siphoviridae; unclassified Siphoviridae |
| PYO97_23 | 5 | 73,434 | Enterococcus phage VD13 (NC_024212.1) | 74.273 | Caudovirales; Siphoviridae; Sap6virus |
| PYO97 special cases, including bins classified as non-phages. (Category 6) | |||||
| PYO97_2 | 1 | 11,313 | uncultured Mediterranean phage uvMED-GF-C25-MedDCM-OCT-S33-C258 (AP014078.1) | 0.704 | unknown |
| PYO97_6 | 8 | 23,397 | uncultured Mediterranean phage uvMED-CGF-C14B-MedDCM-OCT-S36-C258 (AP013800.1) | 1.426 | unknown |
| PYO97_18 | 1 | 11,354 | Pseudomonas phage PRR1 (NC_008294.1) | 0.984 | unknown |
| PYO97_19 | 10 | 284,533 | Staphylococcus phage Sb-1 (HQ163896.1) | 18.88 | Caudovirales; Myoviridae |
| PYO97_33 | 3 | 10,088 | uncultured Mediterranean phage uvMED-CGF-C23-MedDCM-OCT-S24-C232 (AP013582.1) | 1.131 | unknown |
* PYO97_31 is 20 kbp shorter than the reference, therefore it was placed in this category, despite the high ANI of the reference genome. # Means “number of”. The 5th column reports the ANI of the reference genome towards the bin.