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. 2017 Dec 19;7:17844. doi: 10.1038/s41598-017-17250-z

Associations of genetic polymorphisms in pTEN/AKT/mTOR signaling pathway genes with cancer risk: A meta-analysis in Asian population

Zhen Zhang 1, Qiuchen Chen 1, Jing Zhang 1, Yilin Wang 1, Xiaoyun Hu 1, Sainan Yin 1, Miao He 1, Shu Guan 2, Wenyan Qin 1, Qinghuan Xiao 3, Haishan Zhao 1, Weifan Yao 1, Huizhe Wu 1,, Minjie Wei 1,
PMCID: PMC5736732  PMID: 29259266

Abstract

The pTEN/AKT/mTOR signaling pathways play a critical role in balancing cell proliferation, differentiation, and survival. Recent studies researched the associations of core genes in the pTEN/AKT/mTOR pathway polymorphisms with the cancer susceptibility; however, the results are inconclusive. Therefore, a systematically meta-analysis was performed to evaluate the association between the five SNPs (mTOR rs2295080 and rs2536, AKT1 rs2494750 and rs2494752, pTEN rs701848) and cancer risk by systematic review of the literature in 31 eligible studies. The results showed a significant decreased risk between rs2295080 TG, GG genotype, and GG/TG genotypes and overall cancer [TG vs.TT: OR(95% CI) = 0.82(0.76, 0.89), GG/TG vs. TT: OR(95% CI) = 0.82(0.76, 0.88), and GG vs. TG/TT: OR(95% CI) = 0.67(0.51, 0.88)] and the subgroup of urinary system cancer and digestive system cancer. Moreover, the SNP rs701848 CC, TC genotype showed significantly increased the overall cancer risk both in dominant model [CC/TC vs. TT: OR(95% CI) = 1.25(1.15, 1.36)] and recessive model [CC vs. TC/TT: OR(95% CI) = 1.20(1.09, 1.32)], and digestive system cancer and urinary system cancer. In addition, AG genotype and GG/AG genotype of rs2494752 was associated with increased risk of cancer. Therefore, this meta-analysis provided genetic risk factors for carcinogenesis and the most valid cancer prevalence estimate for Asian population.

Introduction

Cancer is a major public health problem around the globe1. It is currently the second leading cause of death, and approximately 1, 658, 370 new cancer cases worldwide, 429000 new cases in China were reported according to the Cancer Statistics 20152. The carcinogenesis is involved in multifactor interaction among environmental exposures, life style and internal factors. In terms of internal factors, the main manifestations are changes in hormone secretion and immune conditions, and genetic variation in the key signaling pathway. In humans, the phosphatase and tensin homolog deleted on chromosome10 (pTEN)/AKT/mammalian target of rapamycin (mTOR) signaling pathway is frequently activated in a variety of cancers, and play a critical role in many cellular processes including proliferation, differentiation, cell cycle progression, cell motility and tumorigenesis, tumor growth, angiogenesis35. Therefore, the Single nucleotide polymorphisms (SNPs) of core genes in the pTEN/AKT/mTOR pathway may impact the transcription and expression of the proteins and thus alter the capacity and function of the pathway, which could play a critical role in carcinogenesis69.

The mTOR, which is located at the chromosome 1q36.2, plays a significant role in the pTEN/AKT/mTOR pathway. It exerts a prosurvival influence on cells through the activation of factors involved in protein synthesis1013. pTEN is a tumor suppressor and plasma-membrane lipid phosphatase and which dephosphorylates PIP3 to PIP2, inhibiting the activation of AKT, and negatively regulates the pTEN/AKT/mTOR pathway14. To date, among the pTEN/AKT/mTOR pathway genes, there are more than 1000 coding-region SNPs (cSNPs) (http://www.ncbi.nlm.nih.gov/projects/SNP) reported. Among those cSNPs, a few potential functional SNPs especially located in the 5′-untranslated regions(5′UTR) and 3′UTR of the candidate genes could affect the carcinogenesis by modulating the transcriptional activity of candidate genes or by interacting with the miRNA binding, such as rs2295080 in the mTOR gene promoter region1523, rs2494750 and rs2494752 in the AKT1 5′UTR region7,15,2327, rs2536 in the 3′UTR of mTOR 7,1518,22,23,2830 and rs701848 the pTEN 3′UTR region7,15,27,3142. Furthermore, previous studies demonstrated that the mTOR rs2295080 TT genotypes carriers showed a much higher mRNA levels of mTOR transcription by increasing the transcriptional activity of mTOR gene in human gastric cancer cell line SGC-79016. Moreover, carrying the rs2295080 T allele showed increased mTOR mRNA levels compared with the G allele in the patients with renal cell cancer7 and colorectal cancer8. Moreover, another SNP rs2536 located in the mTOR 3′-UTR was predicted to affect miRNA-binding site activity. Li et al.43 found that co-transfection of the rs2536 A allele and G allele with miR-767-3p exhibited different promoter activities. Additionally, the polymorphism of pTEN rs701848 was proposed to involve in affecting the activity of micorRNA binding site36. Therefore, considering the critical role of the genetic variations in the pTEN/AKT/mTOR pathway, understanding the association between these SNPs and cancer susceptibility are urgently required.

To date, numerous studies have investigated the association of genetic polymorphisms of pTEN/AKT/mTOR pathway genes including rs2295080, rs2536 of mTOR gene, rs2494750 and rs2494752 in the AKT1 gene, pTEN rs701848 with cancer susceptibility69,1523,2842, however, the results were inconclusive. Therefore, this comprehensive meta-analysis was performed in 5 SNPs of pTEN/AKT/mTOR pathway genes included all eligible case-control studies for evaluating the cancer risk and providing more precise estimation of these associations.

Materials and Methods

Literature research and data extraction

A comprehensive literature search was performed independently by three authors (Z.Z., J.Z., and Q.C.C.) in five electronic databases: PubMed database, CNKI, CbmWeb, WanFang Date, BIOSIS Preview, and ClinicalKey. All the searched eligible original studies and review articles were reviewed carefully to identify the relevant articles by using the following search terms “mTOR rs2295080” or “mTOR rs2536” or “pTEN rs701848” or “AKT1 rs2494750” or “AKT1 rs2494752” and “polymorphism or SNP or single nucleotide polymorphism or variation or mutation” and “cancer or carcinoma or tumor or neoplasm”, (the search was updated on Feb 15, 2017). This search was limited to these articles with English or Chinese language, and the results were reviewed and compared by a forth reviewer (Y. L.W.).

In this meta-analysis, selected publications were eligible if they fulfilled the following criteria: (1) a case-control study or cohort study design; (2) evaluated the association of the genetic polymorphisms of mTOR, AKT1, and pTEN gene with the risk of cancer; (3) sufficient genotypic and/or allelic information for estimating the odds ratio (OR) with 95% confidence intervals (CIs) was provided; (4) the samples size of cases or controls were ≥20. Animal studies, case reports, reviews, and unpublished results were excluded. The following data was extracted from each publication in the collection criterion by Z.Z. and Y. L.W. independently: first author, publication year, ethnicity, country, cancer type, control source (population-based controls, or hospital-based controls), genotyping method, the total number of genotyped cases or controls, and the number of each genotype for cases and controls with each SNP for cancer risk assessment.

Statistical analysis

For the genotype frequency of the controls, the Hardy-Weinberg equilibrium (HWE) was assessed by using the Chi-square test or Fisher’s exact test (P > 0.05) in each study. The pooled odds ratios (ORs) and their corresponding 95% confidence intervals (CIs) were estimated to evaluate the strength of association between these selected 5 SNPs and cancer risk. The pooled estimated ORs and CIs were determined by Z-test based on homozygote model, heterozygote model, dominant model, recessive model, and an additive model(significant for P < 0.05). The heterogeneity between-study was assessed across all eligible comparisons by using χ2-based Cochran’s Q-test (significant for P < 0.10). The random-effects model (DerSimonian-Laird method) was chosen If there is statistical heterogeneity, otherwise the fixed-effects model (Mantel–Haenszel method) was used if the studies were homogeneous. The I 2 statistics was also determined from 0% to 100%, which quantified the heterogeneity irrespective of the number of studies. The sensitivity meta-analysis was assessed by leave-one-out each time to reflect the influence of each study to the pooled estimates. The publication bias was evaluated by the Egger’s and Begg-Matzumdar linear regression tests using asymmetry of the funnel plot (significant for P < 0.10). All the statistical analyses of this meta-analysis were performed by using Stata 12.0 software (StataCorp LP, College Station, USA) and Open Meta-Analyst (http://www.cebm.brown.edu/openmeta/).

Results

Studies extraction and characteristics

Figure 1 summarizes a flowchart presenting the literature review process of study identification, inclusion, exclusion. With the search strategy, a total of 145 published articles were extracted and identified for cancer risk assessment from PubMed, CNKI, CbmWeb, WanFang Date, BIOSIS Preview. After manually screening abstracts and texts of the included 145 studies, 114 were excluded for 2 lack of enough information, 14 abstracts without sufficient data, and 98 duplicated publication or overlapping with other publications for further evaluation. Finally, 31 studies of Asian population were met the inclusion criteria69,1523,2842, 13 studies of them evaluated the association of mTOR rs2295080 with cancer risks69,1523, 10 studies determined the SNP rs2536 of mTOR gene and cancer susceptibility7,1518,22,23,2830, 16 publications were pTEN rs701848 polymorphism7,15,27,3142, 6 reports studied the AKT1 rs2494750 SNP7,15,2327 and 3 reports determined AKT1 rs2494752 SNP19,26,27. The distribution of genotypes in the controls for the SNPs of pTEN/AKT/mTOR pathway were in the HWE, except for these 2 publications of Liu, B et al.33 for rs70148 and Fallah et al.24 for rs2494750 (Table 1). In this final meta-analysis 8965 cases and 9868 controls for the mTOR rs2295080, 8411 cases and 8837 controls for the mTOR rs2536, 5882 cases and 6284 controls for the pTEN rs701848, 4332 cases and 4498 controls for the AKT1 rs2494750, and 3187 cases and 3174 controls for the AKT1 rs2494752 were included. The types of cancers mainly include renal cancer, prostate cancer, acute lymphoblastic leukemia (ALL), gastric cancer, hepatocellular cancer, laryngo cancer, colorectal cancer and esophageal squamous cell cancer (ESCC). The ethnicity of the included studies is Asian, and genotyping method includes TaqMan SNP genotyping assay and PCR-RFLP method. The essential characteristics for all studies were shown in Table 1.

Figure 1.

Figure 1

Flow of identification, inclusion, exclusion of the studies.

Table 1.

Characteristics of studies included in the meta-analysis.

Variant Author[ref] Year Country Ethnicity Tumor type Control Source Genotyping method Cases Controls HWE (cases) HWE (controls)
mTOR rs2295080 TT TG GG Total TT TG GG Total
Cao, Q.7 2012 China Asian Renal cancer HB TaqMan assay 454 218 38 710 438 277 45 760 0.084 0.891
Chen, J. W.15 2012 China Asian Prostate cancer HB TaqMan assay 429 209 28 666 413 259 36 708 0.690 0.573
Huang, L.16 2012 China Asian ALL HB TaqMan assay 254 140 23 417 353 180 21 554 0.523 0.742
Li, Q. X.17 2013 China Asian Prostate cancer PB PCR-RFLP 653 311 40 1004 617 382 52 1051 0.697 0.468
Xu, M.6 2013 China Asian Gastric cancer HB PCR-RFLP 482 246 25 753 497 305 52 854 0.345 0.569
Zhu, M. L.18 2015 China Asian ESCC HB TaqMan assay 674 390 49 1113 702 362 49 1113 0.432 0.788
Xu, M.8 2015 China Asian Colorectal cancer HB TaqMan assay 482 225 30 737 459 273 45 777 0.563 0.602
Wang, M. Y.19 2015 China Asian Gastric cancer HB TaqMan assay 568 394 40 1002 607 355 41 1003 0.005 0.221
Zhao, P.20 2015 China Asian ALL HB PCR-RFLP 68 50 15 133 173 111 12 296 0.221 0.263
Zhao, P.20 2015 China Asian AML HB PCR-RFLP 27 14 6 47 173 111 12 296 0.080 0.263
Zhu, J. H.21 2015 China Asian Renal cancer HB TaqMan assay 674 390 49 1113 702 362 49 1113 0.432 0.788
Zhao, Y.22 2016 China Asian Breast cancer HB Sequencing 351 197 12 560 345 212 26 583 0.009 0.358
Zhang, J.23 2016 China Asian Renal cancer HB TaqMan assay 454 218 38 710 438 277 45 760 0.084 0.891
mTOR rs2536 TT TC CC Total TT TC CC Total
Cao, Q.7 2012 China Asian Renal cancer HB TaqMan assay 607 99 4 710 628 128 4 760 0.001 0.353
Chen, J. W.15 2012 China Asian Prostate cancer HB TaqMan assay 565 96 5 666 585 119 4 708 0.697 0.435
Huang, L.16 2012 China Asian ALL HB TaqMan assay 346 65 6 417 448 103 3 554 0.153 0.258
Li, Q.17 2013 China Asian Prostate cancer PB PCR-RFLP 804 192 8 1004 894 147 10 1051 0.346 0.156
Zhu, M. L.18 2013 China Asian ESCC HB TaqMan assay 951 165 7 1123 957 157 7 1121 0.957 0.839
Mao, L. Q.28 2013 China Asian Hepatocellular cancer HB TaqMan assay 849 186 13 1048 850 188 14 1052 0.439 0.330
He, J.29 2013 China Asian Gastric cancer HB TaqMan assay 938 179 8 1125 1019 170 7 1196 0.865 0.975
Liu, Y. C.30 2014 China Asian Hepatocellular cancer HB TaqMan assay 849 186 13 1048 850 188 14 1052 0.439 0.330
Zhang, J.23 2016 China Asian Renal cancer HB TaqMan assay 607 99 4 710 628 128 4 760 0.987 0.353
Zhao, Y.22 2016 China Asian Breast cancer HB Sequencing 453 100 7 560 486 93 4 583 0.580 0.845
pTEN rs701848 TT TC CC Total TT TC CC Total
Zou, J. F.31 2006 China Asian Laryngo cancer HB PCR-RFLP 17 23 12 52 28 52 24 104 0.547 0.135
Liu, B.33 2008 China Asian Laryngo cancer HB PCR-RFLP 7 20 12 91 13 22 9 104 0.578 0.008
Zhai, Y.32 2009 China Asian Laryngo cancer HB PCR-RFLP 29 45 17 39 26 54 24 44 0.144 0.074
Song, Z. X.34 2009 China Asian Laryngo cancer HB PCR-RFLP 46 74 29 149 26 54 24 104 0.791 0.073
Shi, G. L.35 2009 China Asian Lung cancer HB PCR-RFLP 21 43 13 77 24 54 26 104 0.026 0.134
Song, Z. X.42 2009 China Asian Gastric cancer HB PCR-RFLP 43 67 21 58 65 116 34 104 0.311 0.253
Ding, J.36 2011 China Asian Hepatocellular cancer HB PCR-RFLP 222 338 150 131 277 351 132 215 0.797 0.788
Cao, Q.7 2012 China Asian Renal cancer HB TaqMan assay 70 121 35 710 103 90 33 760 0.055 0.691
Chen, J. W.15 2012 China Asian Prostate cancer HB TaqMan assay 212 329 125 666 235 353 120 708 0.789 0.956
Jang, Y.38 2013 China Asian ESCC HB PCR-RFLP 91 155 58 304 183 165 65 413 0.950 0.692
Tang, Q. S.27 2014 China Asian Breast cancer HB TaqMan assay 239 519 212 970 280 486 168 934 0.938 0.692
Zhang, Y. G.41 2014 China Asian ESCC HB PCR-RFLP 205 182 38 494 243 182 21 494 0.894 0.519
Xu, X.39 2015 China Asian ESCC HB TaqMan assay 186 421 173 425 229 397 138 446 0.257 0.692
Lin, L.40 2015 China Asian Colorectal cancer HB TaqMan assay 222 338 150 780 277 351 132 764 0.027 0.088
Liu, N.37 2015 China Asian ESCC HB PCR-RFLP 173 241 80 226 145 248 101 226 0.440 0.988
Zhang, J.23 2016 China Asian Renal cancer HB TaqMan assay 17 35 6 710 24 54 26 760 0.311 0.253
AKT1 rs2494750 GG GC CC Total GG GC CC Total
Cao, Q.7 2012 China Asian Renal cancer HB TaqMan assay 300 340 70 710 349 328 83 760 0.062 0.652
Chen, J. W.15 2012 China Asian Prostate cancer HB TaqMan assay 80 269 317 666 78 299 331 708 0.053 0.399
Fallah, S24 2015 Iran Asian Endometrial cancer HB PCR-RFLP 19 6 5 30 22 5 3 30 0.007 0.015
Zhang, J.23 2016 China Asian Renal cancer HB TaqMan assay 300 340 70 710 349 328 83 760 0.062 0.652
Wang, M. Y.25 2016 China Asian Gastric cancer HB TaqMan assay 493 480 126 1099 545 487 112 1144 0.577 0.833
Zhu, J. H.26 2016 China Asian ESCC HB TaqMan assay 555 448 114 1117 521 460 115 1096 0.098 0.371
AKT1 rs2494752 AA AG GG Total AA AG GG Total
Tang, Q. S.27 2014 China Asian Breast cancer HB TaqMan assay 300 511 159 970 331 464 139 934 0.017 0.253
Wang, M. Y.25 2016 China Asian Gastric cancer HB TaqMan assay 547 454 99 1100 623 430 91 1144 0.730 0.167
Zhu, J. H.26 2016 China Asian ESCC HB TaqMan assay 611 423 83 1117 597 415 84 1096 0.409 0.317

HB, Hospital based; PB, Population based; PCR-RFLP, polymorphism chain reaction- restriction fragment length polymorphism; ALL, Acute lymphocytic leukemia; ESCC, Esophageal squamous cell carcinoma; AML, Acute myeloid leukemia.

Meta-analysis results

mTOR rs2295080, rs2536 and cancer risk analysis

The meta-analysis results for the mTOR rs2295080 and rs2536 polymorphism and cancer susceptibility are illustrated in Tables 2, 3, Fig. 2, and Figure S1. Overall, we observed that carrying mTOR rs2295080 TG or GG genotype and GG/TG genotype showed significant association with decreased cancer risk [TG vs.TT in heterozygote model: OR(95% CI) = 0.82(0.76, 0.89), P < 0.001; GG/TG vs. TT in dominant model: OR(95% CI) = 0.82(0.76, 0.88), P < 0.001; and GG vs.TG/TT in recessive model: OR(95% CI) = 0.67(0.51, 0.88), P = 0.004]. In view of the relative higher heterogeneities, we further analyzed the data by stratification subgroups of urinary system cancer, blood system cancer, and digestive system cancer. Subsequently, we found that rs2295080 GG genotype, TG genotype, and GG/TG genotypes carriers showed a significantly decreased cancer risk in the stratification analysis of urinary system cancer [GG vs.TT: OR(95% CI) = 0.78(0.62, 0.97), P = 0.029; TG vs. TT: OR(95% CI) = 0.77(0.69, 0.85), P < 0.001; GG/TG vs. TT: OR(95% CI) = 0.77(0.69, 0.85), P < 0.001; and GG vs. TG/TT: OR(95% CI) = 0.79(0.63, 0.98), P = 0.035] and digestive system cancer [GG vs.TT: OR(95% CI) = 0.56(0.40, 0.79), P = 0.001; TG vs. TT: OR(95% CI) = 0.81(0.70, 0.94), P = 0.006; GG/TG vs. TT: OR(95% CI) = 0.77(0.67, 0.89), P = 0.001; and GG vs. TG/TT: OR(95% CI) = 0.55(0.40, 0.77), P = 0.001]. However, in the subgroup analysis of blood system cancer, inversely results were found that a significantly increased cancer risk was observed in the carriers of GG genotype [GG vs.TT: OR(95% CI) = 2.25(1.33, 3.82), P = 0.003]. For mTOR rs2536 polymorphism, there was no association was observed both in overall analysis and subgroup analysis (Tables 2 and 3).

Table 2.

Meta-analysis of the association between genetic polymorphisms of PTEN/AKT/mTOR pathway and cancer risk.

Variables No. of cases/controls P z* Homozygous OR(95% CI) P het# I 2# (%) P z* Heterozygous OR(95% CI) P het# I 2# (%)
mTOR rs2295080 GG vs. TT TG vs. TT
Urinary system cancer 4203/4392 0.029 0.78(0.62, 0.97) 0.978 0.0 0.000 0.77(0.69, 0.85) 0.999 0.0
Blood system cancer§ 5971/1146 0.003 2.25(1.33, 3.82) 0.264 24.8 0.574 1.07(0.86, 1.33) 0.691 0.0
Digestive system cancer 3605/3747 0.001 0.56(0.40, 0.79) 0.481 0.0 0.006 0.81(0.70, 0.94) 0.707 0.0
Overall 8965/9868 0.456 0.89(0.65, 1.22) 0.001 69.2 0.000 0.82(0.76, 0.89) 0.465 0.0
mTOR rs2536 CC vs. TT TC vs. TT
Urinary system cancer 3090/3279 0.954 1.02(0.56, 1.86) 0.976 0.0 0.729 0.95(0.69, 1.29) 0.001 81.0
Digestive system cancer 417/554 0.975 0.99(0.64, 1.53) 0.97 0.0 0.473 1.04(0.93, 1.17) 0.789 0.0
Blood system cancer 4344/4421 0.181 2.59(0.64, 10.43) 0.245 0.82(0.58, 1.15)
Overall 8411/8837 0.555 1.10(0.80, 1.53) 0.968 0.0 0.998 1.00(0.89, 1.13) 0.022 53.7
pTEN rs701848 CC vs. TT TC vs. TT
Oral cavity cancer¥ 331/356 0.359 0.81(0.53, 1.26) 0.312 16.0 0.292 0.82(0.57, 1.18) 0.603 0.0
Digestive system cancer 2418/2662 0.000 1.51(1.24, 1.84) 0.037 57.7 0.000 1.36(1.19, 1.57) 0.032 59.2
Urinary system cancer 2086/2228 0.001 1.33(1.12, 1.58) 0.561 0.0 0.049 1.14(1.00, 1.31) 0.539 0.0
Overall 5882/6284 0.000 1.35(1.21, 1.51) 0.019 48.1 0.000 1.21(1.11, 1.32) 0.050 40.9
AKT1 rs2494750 CC vs. GG GC vs. GG
Urinary system cancer 2086/2228 0.830 0.97(0.76, 1.24) 0.671 0.0 0.050 3.60(1.00, 12.97) 0.000 96.0
Reproductive system cancer$ 30/30 0.621 0.93(0.70, 1.24) 0 0.01(0.01, 0.03)
Digestive system cancer 2216/2240 0.264 1.13(0.91, 1.41) 0.304 5.3 0.292 1.31(0.79, 2.17) 0.000 97.5
Overall 4332/4498 0.727 1.03(0.89, 1.18) 0.658 0.0 0.943 1.03(0.49, 2.17) 0.000 97.5
AKT1 rs2494752 GG vs. AA AG vs. AA
Digestive system cancer 2217/2240 0.397 1.10(0.88, 1.38) 0.273 16.8 0.151 1.10(0.97, 1.24) 0.137 54.8
Other cancer 970/934 0.098 1.26(0.96, 1.66) 0.057 1.22 (0.99, 1.48)
Overall 3187/3174 0.090 1.16(0.96, 1.38) 0.412 0.0 0.026 1.13(1.01, 1.25) 0.228 32.4

* P z: the significance of the pooled OR was determined by Z-test, and P < 0.05 was considered as statistically significant.

# P het and I 2 were calculated by Chi square-based Q-test.

Urinary system cancer: renal cancer, prostate cancer; §Blood system cancer: acute lymphocytic leukemia, acute myeloid leukemia; Digestive system cancer: gastric cancer, ESCC, hepatocellular cancer, colorectal cancer; ¥Oral cavity cancer: laryngo cancer; $Reproductive system cancer: endometrial cancer.

Table 3.

Meta-analysis of the association between genetic polymorphisms of PTEN/AKT/mTOR pathway and cancer risk by recessive and dominant models.

Variables P z* Dominant OR(95% CI) P het# I 2# (%) P z* Recessive OR(95% CI) P het# I 2# (%)
mTOR rs2295080 GG/TG vs. TT GG vs. TG/TT
Urinary system cancer 0.000 0.77(0.69, 0.85) 1.000 0.0 0.035 0.79(0.63, 0.98) 0.827 0.0
Blood system cancer§ 0.142 1.17(0.95, 1.44) 0.722 0.0 0.742 0.91(0.52, 1.59) 0.139 49.3
Digestive system cancer 0.001 0.77(0.67, 0.89) 0.867 0.0 0.001 0.55(0.40, 0.77) 0.809 0.0
Overall 0.000 0.82(0.76, 0.88) 0.113 36.9 0.004 0.67(0.51, 0.88) 0.004 67.2
mTOR rs2536 CC/TC vs. TT CC vs. TC/TT
Urinary system cancer 0.836 0.99(0.86, 1.13) 0.002 79.3 0.972 1.01(0.55, 1.85) 0.952 0.0
Digestive system cancer 0.489 1.04(0.93, 1.16) 0.749 0.0 0.960 0.99(0.64, 1.53) 0.976 0.0
Blood system cancer 0.400 0.87(0.62, 1.21) 0.165 2.68(0.67, 10.78)
Overall 0.649 1.02(0.94, 1.10) 0.036 49.7 0.572 1.10(0.79, 1.53) 0.961 0.0
pTEN rs701848 CC/TC vs. TT CC vs. TC/TT
Oral cavity cancer¥ 0.674 0.82(0.58, 1.15) 0.568 0.0 0.250 0.92(0.64, 1.34) 0.409 0.0
Digestive system cancer 0.017 1.40(1.22, 1.59) 0.061 52.5 0.000 1.23(1.04, 1.47) 0.027 60.4
Urinary system cancer 0.008 1.20(1.05, 1.36) 0.784 0.0 0.006 1.23(1.05, 1.43) 0.476 0.0
Overall 0.000 1.25(1.15, 1.36) 0.179 24.9 0.000 1.20(1.09, 1.32) 0.015 49.9
AKT1 rs2494750 CC/GC vs. GG CC vs. GC/GG
Urinary system cancer 0.310 1.09(0.92, 1.30) 0.369 0.0 0.999 1.00(0.84, 1.20) 0.575 0.0
Reproductive system cancer$ 0.312 0.92(0.78, 1.08) 0.825 0.97(0.74, 1.28)
Digestive system cancer 0.055 1.13(1.00, 1.29) 0.784 0.0 0.557 1.07(0.86, 1.31) 0.185 43
Overall 0.198 1.06(0.97, 1.16) 0.293 18.5 0.810 1.02(0.90, 1.15) 0.67 0.0
AKT1 rs2494752 GG/AG vs. AA GG vs. AG/AA
Digestive system cancer 0.129 1.10(0.97, 1.23) 0.098 63.5 0.614 1.06(0.85, 1.31) 0.447 0.0
Other cancer 0.037 1.23(1.01, 1.48) 0.365 1.12(0.88, 1.44)
Overall 0.017 1.13(1.02, 1.25) 0.157 46.0 0.329 1.08(0.92, 1.28) 0.704 0.0

* P z: the significance of the pooled OR was determined by Z-test, and P < 0.05 was considered as statistically significant.

# P het and I 2 were calculated by Chi square-based Q-test.

Urinary system cancer: renal cancer, prostate cancer; §Blood system cancer: acute lymphocytic leukemia, acute myeloid leukemia; Digestive system cancer: gastric cancer, ESCC, hepatocellular cancer, colorectal cancer; ¥Oral cavity cancer: laryngo cancer; $Reproductive system cancer: endometrial cancer.

Figure 2.

Figure 2

Forest plots of cancer risk with polymorphism of mTOR rs2529080 (A,B), pTEN rs701848 (C,D) and AKT1 rs2494752 (E,F) assessing by subgroup analysis under the homozygoute model (A,C,E), heterozygote model (B,D,F). The estimates of OR(95% CIs) are plotted with a box and a horizontal line for each study. ◇, pooled ORs (95% CIs).

pTEN rs701848 and cancer risk analysis

The effect of pTEN rs701848 polymorphism on cancer risk in overall and subgroup analysis was shown in Tables 2, 3 and Figs 3 and S2.The SNP rs701848 CC or TC genotype and CC/TC genotype were associated with an increased overall cancer risk [CC vs.TT in homozygote model: OR(95% CI) = 1.35(1.21, 1.51), P < 0.001; TC vs. TT in heterozygote model: OR(95% CI) = 1.21(1.11, 1.32), P < 0.001; CC/TC vs. TT in dominant model: OR(95% CI) = 1.25(1.15, 1.36), P < 0.001; and CC vs. TC/TT in recessive model: OR(95% CI) = 1.20(1.09, 1.32), P < 0.001]. In the further stratification analysis, we found that rs701848 CC genotype, TC genotype and CC/TC genotypes were statistically increased association with digestive system cancer [CC vs.TT: OR(95% CI) = 1.51(1.24, 1.84), P < 0.001; TC vs. TT: OR(95% CI) = 1.36(1.19, 1.57), P < 0.001; and CC/TC vs. TT: OR(95% CI) = 1.40(1.22, 1.59), P = 0.017; and CC vs. TC/TT: OR(95% CI) = 1.23(1.04, 1.47), P < 0.001] and urinary system cancer[CC vs. TT: OR(95% CI) = 1.33(1.12, 1.58), P < 0.001; TC vs. TT: OR(95% CI) = 1.14(1.00, 1.31), P = 0.049; and CC/TC vs. TT: OR(95% CI) = 1.20(1.05, 1.36), P = 0.008; and CC vs. TC/TT: OR(95% CI) = 1.23(1.05, 1.43), P = 0.006], however no association was observed between the oral cavity cancer and cancer risk in this concluded studies.

Figure 3.

Figure 3

Forest plots of cancer risk with polymorphism of mTOR rs2529080 (A,B), pTEN rs701848 (C,D) and AKT1 rs2494752 (E,F) assessing by subgroup analysis under the dominant model (A,C,E) and recessive model (B,D,F). The estimates of OR(95% CIs) are plotted with a box and a horizontal line for each study. ◇, pooled ORs (95% CIs).

AKT1 rs2494750, rs2494752 and cancer risk analysis

The association between polymorphisms of AKT1 rs2494750, rs2494752 and cancer risk in overall meta-analysis results was shown in Tables 2, 3 and Fig. 3, and Figure S2. A significant association was observed between AKT1 rs2494752 and overall cancer risk, and the heterozygous genotype AG and GG/AG genotype of AKT1 rs2494752 were associated with increased cancer risk (AG vs. AA in heterozygote model: OR(95% CI) = 1.13(1.01, 1.25), P = 0.026; and GG/AG vs. AA in dominant model: OR(95% CI) = 1.13(1.02, 1.25), P = 0.017). For AKT1 rs2494750 polymorphism, we have not found the correlation with the cancer susceptibility both in overall analysis and subgroup analysis (Tables 2 and 3).

Heterogeneity and sensitivity analysis

No significant heterogeneities were observed for the overall analyses of mTOR rs2536, AKT1 rs2494750 and rs2494752. However, the highest heterogeneity were observed when all the studies were analyzed for all the cases of mTOR rs2295080 under the dominant model (I 2 = 96.1%) and pTEN rs701848 under the dominant model (I 2 = 62.0%) (Tables S1 and S2). The heterogeneity of mTOR rs2295080 was also present in the subgroup of urinary system cancer and digestive system cancer under the dominant model (Table S2). Therefore, the leave-one-out sensitivity analysis and random-effects model was selected for decreasing the heterogeneity. When these 3 publications of Zhu, M. L. (2015), Wang, M.Y. (2015), Zhu, J.H. (2015) were deleted, the value of I 2 decreased from 96.1% to 39.6% under the dominant model. More importantly, after deleting these 2 articles of Zhu, M. L. (2015), Wang, M.Y. (2015) from digestive system cancer, the subgroup of heterogeneity significantly decreased from 97.6% to 0% (Tables 3 and S2). Another article of Zhu, J.H. (2015) from urinary system cancer was deleted, the I 2 decreased from 96.3% to 0% under the dominant model in subgroup analysis (Tables 3 and S2). For pTEN rs701848, we found that the heterogeneity of overall and subgroup was significantly decreased after deleting this article of Zhang Y.G.(2014), except the subgroup under the digestive system cancer (Tables 2, 3, S1 and S2).

Publication bias analysis

In this meta-analysis, the Begg’s funnel plot and Egger’s test were performed to evaluate the publication bias of the concluded studies. There are no significant publication bias was observed for all the dominant models of the five SNPs (rs2295080: P = 0.200; rs2536: P = 0.176; rs701848: P = 0.218; rs2494750: P = 0.694 and rs2494752: P = 0.696) by the Egger’s test. The funnel plots shapes showed obvious symmetry, which were obtained for the association of the SNPs under the dominant model (rs2295080: P = 0.672; rs2536: P = 0.531; rs701848: P = 0.373; rs2494750: P = 1.000 and rs2494752: P = 602) (Fig. 4). The data indicated that no publication bias might have a significant influence on the observed effect of SNPs located at pTEN/AKT/mTOR pathway on the susceptibility of cancer as assessed.

Figure 4.

Figure 4

Begg’s funnel plots to detect publication bias with pseudo 95% CIs under the dominant model. Each point represents an independent study for the indicated association. (A) mTOR rs2295080; (B) mTOR rs2536; (C) pTEN rs701848; (D and E) AKT1 rs2494750 and rs2494752.

Discussion

Overexpression or mutations of key genes of the pTEN/AKT/mTOR pathways were associated with carcinogenesis, invasion, metastasis, and prognosis of a variety of cancers44,45. Since one group investigated the association of genetic polymorphisms of the pTEN/AKT/mTOR pathway with cancer risk for the first time31, a variety of studies have been performed to explore the possible correlation of the SNPs in this pathway genes on cancer susceptibility69,1523,2842. The potentially functional SNPs in those key genes, especially in the TFBS or miRNA binding sites may involve in the cancer susceptibility. Therefore, the present meta-analysis analyzed the associations of SNPs in the 5′upstream regulatory or promoter region (mTOR rs2295080, AKT1 rs2494752), and 3′UTR region (mTOR rs2536, pTEN rs701848 and AKT1 rs2494750) in the mTOR signaling pathway (AKT, and PTEN) with cancer risk.

mTOR rs2295080 and rs2536 SNPs and cancer risk

Given the crucial function of mTOR in cellular signals from growth factors and energy status, such as in angiogenesis and cell proliferation, growth, differentiation, and apoptosis35,44,45, our findings of an association between the genetic variations in mTOR gene and cancer risk are biologically plausible and wide, including renal cell cancer7,21,23, prostate cancer15,17, breast cancer22, acute lymphocytic leukemia16,20, gastric cancer19,29, esophageal squamous cell cancer18, hepatocellular cancer23,28 and colorectal cancer8. In this meta-analysis of 13 studies including 8965 cases and 9868 controls for rs2295080, we found a significant decreased of rs2295080 TG, GG genotype, G allele and TG/GG genotype on the overall cancer risk, and the stratification subtype of urinary system cancer and digestive system cancer. However, a significant increased association was found on the blood system cancer in the homozygous GG genotype and G allele under the subgroup analysis. Up to now, only two meta-analyses focused on mTOR rs2295080 polymorphism and cancer risk46,47. In one meta-analysis reported that the rs2295080 G allele is associated with decreased risk of cancer46, however, only five studies were included. Recent some opposite findings were reported in gastric cancer6, esophageal cancer18, and especially in acute leukemia16,20. Thereafter, another eight studies meta-analysis found that the rs2295080 G allele was associated with a significantly lower risk of genitourinary cancers in the dominant model, and a higher risk of acute leukemia in the recessive model47, which consistent with our founding’s in overall cancer risk and digestive system cancer. Likewise, we further founded that carrying rs2295080 GG genotype showed increased 2.25-fold association in the blood system cancer including acute lymphocytic leukemia and acute lymphocytic leukemia which was not explicated in the previous meta-analyses. Thus, these data indicated that there was an obvious divergence between the SNP rs2295080 and cancer risk in the digestive system and blood system, which might be partially explained by cancer-specificity of rs2295080 polymorphism.

10 studied of 8411 cases and 8837 controls for rs2536 polymorphism, no significant association was observed between rs2536 and cancer susceptibility after performing stratified analyses by cancer type7,1518,22,23,2830 in this pooled meta-analysis. Previously, Shao et al.46 performed a six case-control studies meta-analysis and also reported that there was no association of rs2536 SNP with cancer risk both under dominant and recessive models. Furthermore, this present updated meta-analysis also indicated that rs2536 polymorphism was not an important biomarker for predicting cancer risk, although rs2536 was observed associated with the risk of esophageal cancer18 and prostate cancer15, together with interacting with environmental factors such as body mass index. The previous foundlings were controversial for the SNP rs2536, partially because of insufficient statistical power and further studies of different cancers are needed for providing a more precise estimation of the associations.

pTEN rs701848 and cancer risk

pTEN was originally identified as tumor suppressor gene, considered as a key negative regulator of PI3K/Akt pathway4850. However, little is known about the association between pTEN rs701848 polymorphism and cancer. Specifically, 15 studies of 5882 cases and 6284 controls for rs701848, CC or TC genotype, C allele and CC/TC genotype were associated with significant increased overall cancer risk and in the subgroup of the digestive system cancer and urinary system cancer, but not in oral cavity cancers. Since Zou et al.31 for the first time reported a significant association of pTEN rs701848 with laryngo cancer risk in 2006, more evidences have accumulated regarding the relationship between SNP rs701848 and the risk of various cancers, such as lung cancer35, esophageal cancer3739,41, breast cancer27, prostate cancer15, hepatocellular cancer36, renal cancer7,23, gastric cancer42, and colorectal cancer40. It should be noted that SNP rs701848 is located within the 3′ near gene region, which can be targeted by microRNAs to affecting the miRNA binding site activity, thereby altering pTEN expression by influencing the mRNA stability, and then influence cancer susceptibility. However, the hypothesized function about SNP rs701848 still needs to be investigated in future studies and updated meta-analysis.

AKT1 rs2494750, rs2494752 and cancer risk

In this pooled meta-analysis, 6 studied of 4332 cases and 4498 controls for rs2494750 polymorphism7,15,2327 and 3 studied of 3187 cases and 3174 controls for rs2494752 polymorphism19,26,27 were included. A significant association was observed between rs2494752 and overall cancer risk, the heterozygous genotype AG, GG/AG genotype and G allele of rs2494752 SNP was associated with increased cancer risk. However, we have not found the correlation between rs2494750 polymorphism and the cancer susceptibility both in overall analysis and the stratification analysis. Previous study reported15 that the risk effect of rs2494752 AG/GG genotypes was more obvious in the patients of ever-drinkers. Another investigation showed inconsistent results in alcohol consumption patients and risk of gastric cancer25. These results indicated that the environmental factors were interacted with the genetic variants in the aspect of carcinogenesis. Most importantly, the SNP rs2494752 is located at the 5′ UTR of AKT1 gene, a region predicted to be the transcription factor binding region based on the sequence alignments, which may affect the transcription and translation of AKT1. It is plausible that the rs2494752 G allele increased the transcription activity of the promoter in the AKT1 gene, then facilitated the cancer development and progression, which may partially explain the cancer risk associated with this SNP. However, the potential function of this SNP should be necessary to identify in larger sample studies in the future.

There is not previously reported meta-analysis to date that comprehensively elucidated the association between the five SNPs of the pTEN/AKT/mTOR signaling pathway and risk of cancer. However, some limitations need to be addressed in this meta-analysis. First, only Asian population was involved, lack of the samples of other ethnicities such as Caucasian, African in this study, thus a wider spectrum of subjects should be conducted on various ethnicities in the future. Second, only 3 studies were included for the SNP rs2494752, therefore considering the limited small size of rs2494752, we cannot rule out the possibility that the results may be by chance, although the number of study participants met the requirement for analysis. Third, all studies included in the present systematic review were reported in Chinese or English, yet other languages publications may include the relevant studies, which may be the main source of publication bias in our meta-analysis. Finally, only five SNPs located in the 3′UTR or 5′UTR of the candidate genes were chosen, however, the SNPs of exon or intron region was not included. Thus, the limited SNPs were not sufficient to capture most genetic information of pTEN/AKT/mTOR signaling pathway, more SNPs should be included in the study, and interaction with others genes should be investigated in the future updated meta-analysis.

In conclusion, this meta-analysis was performed included the latest publications, and provided a more precise prevalence estimate for associations of five SNPs of pTEN/AK/mTOR pathway with the risk of cancer. We found that mTOR rs2295080 TG, GG genotype and GG/TG genotype carriers showed an decreased in the overall cancer risk, urinary system cancer and digestive system cancer, nevertheless TT genotype of rs2295080 was associated with increased the risk of blood system cancer. Carrying rs701848 CC,TC genotype and CC/TC genotype were associated with an increased overall cancer risk, especially in digestive system cancer and urinary system cancer. Moreover, a significant increased association was observed between rs2494752 AG and GG/AG genotype and overall cancer risk. Therefore, this present study provides the most valid cancer prevalence estimate to date for Asian population, which is a necessary foundational piece for further research on this topic.

Novelty and Impact Statements

In this meta-analysis of Asian population, the carriers of mTOR rs2295080 TG, GG genotype and GG/TG genotypes showed a significantly decreased the risk of overall cancer, the urinary system cancer and digestive system cancer. Furthermore, the SNP rs701848 CC, TC genotype and CC/TC genotype of pTEN were observed increased susceptibility of overall cancer and the subgroup of the urinary and digestive cancer. Moreover, carrying AKT1 rs2494752 AG and GG/AG genotypes showed an increased overall cancer risk.

Electronic supplementary material

supplementary materials (981.8KB, pdf)

Acknowledgements

This work was supported by grants from the National Natural Science Foundation of the People’s Republic of China (Grant No. 31371145, No. 81572613, and No. 81402948), Liaoning Key Laboratory of Molecular Targeted Anti-tumor Drug Development and Evaluation Program, the Educational Commission of Liaoning Province, China (Grant No. L2014315), the Research Fund for the Doctoral Program of Higher Education of Liaoning Province, China (Grant No. 20141032), the Key Laboratory Foundation from Shenyang S&T Projects (F16-094-1-00), Liaoning Province Scientific Research Foundation (2014226033), Program for Liaoning Innovative Research Team in University (No. LT2014016), and the S&T Projects in Shenyang, China (Grant No. F14-232-6-05).

Author Contributions

Huizhe Wu and Minjie Wei conceived the study and edited the paper. Zhen Zhang, Qiuchen Chen, Jing Zhang, Yilin Wang, Haishan Zhao and Weifan Yao searched and collected the data. Xiaoyun Hu, Sainan Yin and Miao He performed the statistical analysis. Zhen Zhang and Huizhe Wu interpreted data and wrote the manuscript. Shu Guan, Wenyan Qin, Qinghuan Xiao and critically revised the manuscript. All authors approved the final version of the manuscript.

Competing Interests

The authors declare that they have no competing interests.

Footnotes

Electronic supplementary material

Supplementary information accompanies this paper at 10.1038/s41598-017-17250-z.

Publisher's note: Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Contributor Information

Huizhe Wu, Email: wuhz@cmu.edu.cn.

Minjie Wei, Email: mjwei@mail.cmu.edu.cn.

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