There are errors in Tables 3–5 which arose during typesetting. The publisher apologizes for these errors.
Table 3. Top ranking alignments of informative library peptides to the T. cruzi proteome.
T. cruzi protein | Total Score |
Target 20mer | # peptide hits | TrTrypDB Gene ID | |
---|---|---|---|---|---|
1 | Mucin: TcMucII* | 3473 | TRAPSRLREVDGSLGSSAWV | 63 | TcCLB.509753.300 |
2 | Uncharacterized protein | 3329 | RRLSYRLRKREDGESYESYL | 59 | TcCLB.510575.140 |
3 | Uncharacterized protein | 3181 | VPVLRVVDAEADERERNGAG | 56 | TCSYLVIO_001012 |
4 | Calmodulin* | 3096 | TEVDVREALRVLDADGDGFL | 57 | TcCLB.510121.50 |
5 | Uncharacterized protein | 3091 | SYRQQRYVDALRFALEEDHE | 56 | TcCLB.508269.50 |
6 | Mucin: TcMucII* | 3032 | RAPSRLREFDGSLSSSAWVC | 56 | TcCLB.506741.110 |
7 | Uncharacterized protein | 3007 | KLRQLDFVEDVLRKHPDKVE | 52 | TcCLB.507011.170 |
8 | Dispersed gene family protein 1 (DGF-1)* | 2983 | HRGGLEALLRDGEDGDEDAQ | 58 |
TcCLB.509735.84 |
9 | Uncharacterized protein | 2973 | LPAQDSVVVRRLVDGQAPLR | 51 | TcCLB.506267.48 |
10 | Vacuolar protein sorting-associated protein (Vps26) | 2966 | ERSPGLLGRLLRKVDGCDVR | 52 | TCSYLVIO_008174 |
* The families in which these proteins are members have been previously identified as antigenic
Table 5. Confusion matrix and performance estimates of the multiclass prediction model.
IST Classification | Blood Bank Confirmed Diagnosis | Performance Summary | |||||
---|---|---|---|---|---|---|---|
T. cruzi + | HBV+ | HCV+ | WNV+ | Sensa | Specb | AUC | |
T. cruzi+ |
77 | 3 | 1 | 2 | 93% | 96% | 0.98 |
HBV+ |
3 | 79 | 12 | 2 | 82% | 96% | 0.96 |
HCV+ |
0 | 3 | 55 | 2 | 92% | 94% | 0.95 |
WNV+ |
8 | 3 | 3 | 82 | 85% | 97% | 0.97 |
Totals |
88 | 88 | 71 | 88 | Overall accuracy = 87% |
aSens, sensitivity
bSpec, specificity
Table 4. Binary classification of each of four disease classes versus a combined class of the remaining three.
Classes | AUC | Sensitivity@ 90% speca |
Specificity@ 90% sensb |
Accuracy@ speca=sensb |
Model size (k) |
---|---|---|---|---|---|
T. cruzi vs. Other |
0.97 (0.96-0.98) |
92% (90%-94%) |
94% (90%-96%) |
92% (90%-92%) |
50 |
HBV vs. Other |
0.94 (0.93-0.95) |
85% (78%-90%) |
85% (78%-90%) |
87% (85%-90%) |
16000 |
HCV vs. Other |
0.96 (0.94-0.97) |
90% (86%-94%) |
91% (82%-96%) |
90% (88%-93%) |
100 |
WNV vs. Other |
0.96 (0.95-0.97) |
87% (78%-94%) |
88% (84%-92%) |
89% (86%-91%) |
1000 |
aspec, specificity
bsens, sensitivity
Reference
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