Abstract
ZIKV is a neurotropic mosquito-borne flavivirus that has recently emerged in the Americas and is a pathogen of significant public health concern across the world. ZIKV was first isolated in Uganda in 1947 and remained dormant in Africa and Asia for decades, with sporadic outbreaks characterized by a mild self-limiting disease in humans. The emergence of ZIKV in the Americas corresponded with enhanced disease severity and congenital Zika syndrome, a phenotype characterized by severe microcephaly, brain anomalies, ocular anomalies, congenital contractures and neurological impairments. In less than two years, a collective effort led by the scientific research community has uncovered many new facets to the once rarely discussed ZIKV. In this review, we highlight the known immune parameters that correlate with protective immunity to ZIKV infection, including pattern recognition receptors, interferons, humoral and cell-mediated responses, as well as countermeasures utilized by ZIKV to inhibit host antiviral immune responses.
Keywords: Zika virus, type I interferon, RIG-I, MDA5, RIG-I signaling, Flavivirus, viral antagonism, innate immunity, JAK/STAT signaling, antibody, T cells
1. Zika virus emergence
Zika virus (ZIKV) is a neurotropic flavivirus that is the etiologic agent responsible for causing the recent epidemic of congenital Zika syndrome (CZS), a phenotype characterized by severe microcephaly, brain anomalies, ocular anomalies, congenital contractures and neurological impairment (Moore et al., 2017). ZIKV is predominately transmitted through the bite of an infected mosquito, however, it has recently been demonstrated that ZIKV can also be transmitted in utero, through sexual contact and blood transfusion (Calvet et al., 2016). The ability of ZIKV to be vertically transmitted is a unique feature that has not been described for any other mosquito-borne flavivirus in humans. ZIKV is closely related to dengue virus (DENV) and members of the Japanese Encephalitis virus (JEV) serogroup strains, such as West Nile virus (WNV) (Weaver et al., 2016). While all known strains of ZIKV fall into a single serotype, genetic evidence suggests three distinct lineages: the East African, West African, and Asian lineages (Dowd et al., 2016; Haddow et al., 2012; Lanciotti et al., 2016). ZIKV was first isolated from an infected sentinel rhesus macaque in the Zika forest region of Uganda in 1947 (Dick et al., 1952) and remained dormant in Africa and Asia for decades, with sporadic outbreaks characterized by a mild self-limiting disease in humans (Weaver et al., 2016). Most recently, Asian lineage viruses have emerged as a global public health threat with widespread epidemics in Micronesia (2007), the Pacific Islands (2013-2014), and the ongoing epidemic in the Americas (2015-2017), where over 50 countries have reported local transmission (Ikejezie et al., 2017).
2. Congenital Zika syndrome
ZIKV infection in immune competent adults is often asymptomatic, although 20% of cases present with symptoms ranging from a mild, self-limiting febrile illness to more severe complications, including an association with Guillain-Barré syndrome and severe thrombocytopenia (Oehler et al., 2014; Parra et al., 2016; Sharp et al., 2016). ZIKV sparked a public health emergency because of increased incidence of microcephaly in Brazil in 2015, coincident with the emergence of ZIKV. Early studies in presumptively infected pregnant mothers revealed evidence of perinatal transmission and the presence of ZIKV in the amniotic fluid and fetal brain (Calvet et al., 2016; Driggers et al., 2016). In many cases, in utero ZIKV infection corresponded with profound fetal defects, including ocular abnormalities, brain calcifications, cerebral atrophy, microcephaly, and fetal loss (Brasil et al., 2016; de Paula Freitas et al., 2016; Driggers et al., 2016; Mlakar et al., 2016). Studies in non-human primate and animal models have supported a causal link between congenital ZIKV infection and the development of fetal abnormalities (Adams Waldorf et al., 2016; Cugola et al., 2016; Miner et al., 2016). Maternal ZIKV infection in mice results in intrauterine growth restriction, placental insufficiency, in utero viral transmission, increased cell death within the fetal brain, and fetal demise (Cugola et al., 2016; Miner et al., 2016). Whether fetal abnormalities are caused primarily from placental damage, direct effects of viral replication within the fetal brain, or a combination of both remains unclear. There are currently no specific therapeutics or vaccines approved for use in humans to combat or prevent ZIKV infection, although several promising pharmacological compounds and vaccines are currently under development (Durbin and Wilder-Smith, 2017; McArthur, 2017). In this review, we highlight the recent findings pertaining to immunity to ZIKV infection and discuss the host antiviral measures and countermeasures utilized by ZIKV to evade innate immune responses.
3. Immunity to ZIKV infection
The initial events following ZIKV infection in humans are not well understood. Largely built on studies using DENV and WNV, it is believed that ZIKV likely infects keratinocytes, Langerhan cells, and dendritic cells as early targets of viral replication (Cerny et al., 2014; Lim et al., 2011). We have recently confirmed that human monocyte-derived Dendritic cells (DCs) support productive viral replication by both African and Asian lineage ZIKV viruses, however, the importance of human DCs during in vivo ZIKV infection remains unclear (Bowen et al., 2017). Through a limited analysis, ZIKV appears to induce systemic pro-inflammatory responses during human infection (Tappe et al., 2016). In particular, human ZIKV infection has correlated with leukopenia, characterized by monocytosis, thrombocytopenia, induction of pro-inflammatory cytokines (IL-1β, IL-6, MIP1α), chemokines (IP-10 and RANTES) and cytokines that promote polyfunctional T cell responses (IL-2, IL-4, IL-9 and IL-17) (Tappe et al., 2016; Zammarchi et al., 2015). However, the cellular sources of inflammation during ZIKV infection are poorly understood. Human DCs do not secrete pro-inflammatory cytokines or type I IFN following ZIKV infection, suggesting that infected DCs may not be an important source of inflammatory cues during in vivo infection (Bowen et al., 2017). Although this study focused primarily on an in vitro infection model, it will be important to also understand the contribution of classical monocytes (CD14+CD16-), inflammatory monocytes (CD14+CD16+) and DCs, including both myeloid and plasmacytoid subsets, in promoting systemic inflammatory responses during human ZIKV infection.
ZIKV infection in a lung carcinoma epithelial cell line induces IFNβ secretion, while primary human skin fibroblasts up-regulate pro-inflammatory cytokine gene expression during ZIKV infection (Frumence et al., 2016; Hamel et al., 2015). Embryonic neuroprogenitor cells (NPCs) do not secrete pro-inflammatory cytokines following ZIKV infection (Hanners et al., 2016). Hofbauer cells, which are a placental macrophage recently identified as a reservoir of ZIKV behave in a similar manner and are poorly immunogenic during ZIKV infection (Bhatnagar et al., 2017; Quicke et al., 2016). In contrast, cranial neural crest cells secrete multiple cytokines involved in inflammation and neurogenesis at levels that promote apoptosis and pre-mature neuronal differentiation during ZIKV infection (Bayless et al., 2016). Combined, ZIKV infection can induce pro-inflammatory responses, but does so in a cell type specific manner. A better understanding of how inflammation is regulated within the placenta and the subsequent impact on the developing fetus will be critical to understanding ZIKV infection and pathogenesis.
ZIKV infection induces broadly neutralizing and protective humoral immune responses against both African and Asian lineage ZIKV strains (Dowd et al., 2016), suggesting a single ZIKV serotype. Interestingly, antibodies against DENV, and to a lesser extent WNV, cross-react with ZIKV but exhibit limited neutralization activity. Recent in vitro and in vivo studies suggest that these cross-reactive non-neutralizing antibodies may enhance infection through a phenomenon termed antibody dependent enhancement (ADE) (Andrade and Harris, 2017; Bardina et al., 2017; Priyamvada et al., 2016). In particular, passive transfer of DENV or WNV convalescent human serum at low treatment doses enhanced ZIKV infection and disease within a murine model, while higher treatment doses were protective (Bardina et al., 2017). Whether prior infection with DENV and WNV can similarly promote enhanced disease following secondary ZIKV challenge within the same host remains to be determined. The impact of cross-reactive antibodies on ZIKV pathogenesis within humans remains unclear, although it is plausible that these cross-reactive antibodies may provide a mechanism for ZIKV to cross the placenta through Fc receptor-mediated transcytosis. A better understanding of the in vivo relevance of ADE during ZIKV infection of an individual with prior flavivirus exposure, either through natural infection or vaccination, is of significant importance to current DENV and ZIKV vaccination efforts.
CD8+ T cell immunity appears to be important during ZIKV infection. In the acute phase, ZIKV-specific CD8+ T cells expand, are polyfunctional and exhibit in vivo cytotoxicity (Elong Ngono et al., 2017). In a non-human primate model of ZIKV infection using rhesus macaques, proliferating CD8+ T cells were observed by 6 days post-infection (dpi), peaked between 8-9 dpi, and had contracted by 14 dpi (Hirsch et al., 2017). Depletion of CD8+ T cells within a murine model compromises viral clearance from the periphery and central nervous system during ZIKV infection. Mice that genetically lack CD8+ T cells are also highly susceptible to ZIKV infection. Notably, CD8+ T cells isolated from ZIKV-infected mice promote viral clearance when adoptively transferred into naïve animals prior to ZIKV infection. Using a neonatal C57BL/6 model, CD8+ T cells have also been found to infiltrate into the CNS and may contribute to neurodegeneration (Manangeeswaran et al., 2016). Recent work in a murine model suggests that DENV-specific CD8+ T cells can cross-react with ZIKV and promote viral clearance during ZIKV infection (Wen et al., 2017). The presence of protective, cross-reactive CD8+ T cell immunity has important implications for the development of T cell vaccines that may provide protection against multiple flaviviruses.
4. Pattern recognition receptor control of ZIKV
The Rentinoic acid inducible gene I (RIG-I)-like receptors (RLRs) family consists of the eponymous member RIG-I, as well as Melanoma differentiation antigen 5 (MDA5) and Laboratory of genetics and physiology 2 (LGP2). The RLRs are located within the cytoplasm of nearly every cell of the body and distinguish host from pathogen by recognizing unique structures found within viral RNA (Loo and Gale, 2011). RIG-I and MDA5 contain N-terminal caspase activation and recruitment domains (CARDs) that interact with the CARD located within the N-terminus of the central adaptor protein, mitochondrial antiviral signaling protein (MAVS) (Vazquez and Horner, 2015). LGP2 lacks CARDs and does not signal through MAVS, but instead functions as a regulator of RLR signaling (Quicke et al., 2017). RIG-I preferentially recognizes short dsRNA molecules, while MDA5 has a preference for longer dsRNA molecules (Kato et al., 2008). Upon ligand binding, RIG-I and MDA5 undergo conformation changes and post-translational modifications, including dephosphorylation and ubiquitination, which fully activate their ability to interact with MAVS (Gack et al., 2007; Wies et al., 2013). Upon interaction with RIG-I or MDA5, MAVS is thought to undergo CARD-dependent oligomerization, forming large MAVS aggregates that can, in vitro, potently activate downstream signaling (Hou et al., 2011). MAVS recruits members of the TNF receptor-associated factor (TRAF) family, E3 ubiquitin ligases that polyubiquitinate MAVS and promote the recruitment of NF-kappa-B essential modulator (NEMO), which itself recruits the serine/threonine protein kinases inhibitor of kappa-B kinase epsilon (IKKε) and TANK-binding kinase 1 (TBK1). IKKε and TBK1 phosphorylate and activate the latent transcription factors interferon regulatory factor-3 (IRF-3) and IRF-7, as well as nuclear factor kappa-B (NFκB), through phosphorylation and degradation of inhibitor of kappa-B (IκB). Upon nuclear translocation, IRF-3 promotes transcription of type I and III IFN and directly activates antiviral effector gene transcription, while NFκB promotes early type I IFN induction and drives pro-inflammatory cytokine production (Brownell et al., 2014; Daffis et al., 2007; Wang et al., 2010).
While the role of RLR signaling during ZIKV infection remains poorly understood, a few recent studies have shed light on their importance. Through the use of short interfering RNAs against the RLRs and TLRs in a human foreskin fibroblast cell line (HFF1 cells), Hamel and colleagues observed increased accumulation of ZIKV RNA in cells in which TLR3, RIG-I and MDA5, but not TLR7, gene expression was silenced as compared to control cells (Hamel et al., 2015). Within primary human DCs, RIG-I signaling potently restricted ZIKV replication, while IFNβ signaling was significantly less effective (Bowen et al., 2017). Despite observing blockade of type I IFN signaling, strong antiviral responses were observed during ZIKV infection in human DCs, including production of multiple antiviral effector molecules. This suggests that RLR signaling may play an essential role in inducing antiviral responses during ZIKV infection through a type I IFN-independent mechanism. In contrast, activation of RLR signaling by ZIKV during infection of neuroepithelial stem cells may result in mitotic arrest and apoptosis due to relocation of phosphorylated TBK1 from centrosomes to the mitochondria (Onorati et al., 2016). Together, this work suggests that while RLR signaling is likely protective during ZIKV infection, RLR activation may have unintended, negative consequences in dividing cells, such as stem cells. Future efforts will need to determine the cell intrinsic roles of RLR signaling during ZIKV infection, including the influence of RLR and other innate immune signaling pathways on the cell cycle of stem cells.
While little is known about the contributions of TLR3 signaling during ZIKV infection, a recent study argues for a potentially pathogenic role within NPCs (Dang et al., 2016). In this study, ZIKV replication within human cerebral organoid cultures was associated with decreased organoid size. Similar attenuated growth was also observed following treatment with poly(I:C), a non-specific agonist that can activate multiple PRRs, including TLR3, RIG-I, and MDA5 (Dang et al., 2016; Kato et al., 2008). Treatment of ZIKV-infected organoids with a specific TLR3 inhibitor partially reversed the growth attenuation. Combined, these findings suggest TLR3 signaling might play a pathogenic role in NPCs by promoting growth attenuation, potentially through regulation of pathways involved in apoptosis and neurogenesis. More rigorous study is needed to validate a role for TLR3 signaling in regulating neural progenitor growth and apoptosis, including the use of genetic ablation and in vivo studies.
5. Type I and III IFN signaling and ZIKV countermeasures
Type I IFN signaling establishes a robust antiviral state through induction of ISGs that restrict viral replication and spread within the host. Secreted IFN-α and IFN-β bind to the IFN-α receptor (IFNAR) and promote phosphorylation of Janus kinase 1 (JAK1) and tyrosine kinase 2 (Tyk2), activating signal transduction and activator of transcription proteins 1 and 2 (STAT1/2). The STAT1/2 heterodimer will then associate with IRF-9, forming the IFN-stimulated gene factor 3 complex (ISGF3), and translocate to the nucleus to bind to specific sequences known as IFN stimulated response elements to drive production of antiviral effector genes (Schneider et al., 2014).
Type I and III IFNs can restrict ZIKV infection as demonstrated through in vitro and in vivo studies in both mice and primary human cells. The importance of type I IFN in mediating host restriction of ZIKV is evident through studies in murine models, which have consistently shown that immune competent adult mice do not support efficient ZIKV replication (Lazear et al., 2016). Antibody blockade of the type I IFN receptor enhances peripheral viral replication, however it is not sufficient to promote severe neuroinvasive disease. A genetic deficiency in type I IFN signaling shifts the balance to sustained viral replication and disseminated disease, promoting spread to the CNS and lethal infection (Lazear et al., 2016; Rossi et al., 2016). A combined deficiency in type I and II IFN, as well as a loss of STAT2 can also promote efficient viral replication, neuroinvasion, and lethality (Aliota et al., 2016; Rossi et al., 2016). Mice that are triply deficient in IRF-3, IRF-5, and IRF-7, and therefore produce minimal type I IFN, are also highly susceptible to lethal ZIKV infection (Lazear et al., 2016). Similar to related flaviviruses, multiple antiviral effector genes induced downstream of type I and III IFN signaling, including viperin and members of the IFITM family, have also been shown to have antiviral activity against ZIKV replication (Savidis et al., 2016; Van der Hoek et al., 2017). Type I IFN signaling is also important within primary human cells, where post-treatment of moDCs with IFN-β inhibited ZIKV replication across African and Asian lineage strains, although the effect paled in comparison to treatment with a highly specific RIG-I agonist (Bowen et al., 2017).
In the context of the placenta, primary human syncytiotrophoblasts (STBs) are also resistant to ZIKV infection, contrasting with the permissiveness of human trophoblastic cell lines (Bayer et al., 2016). Constitutive secretion of the type III IFN, IFNλ1, and to a lesser extent IFNλ2, by STBs corresponds with their ability to restrict ZIKV replication. Treatment of permissive cells with conditioned media obtained from STBs also blocks ZIKV replication in a manner that partially depends on the activity of IFNλ1 and IFNλ2. In contrast, less differentiated trophoblastic cells, cytotrophoblasts (CTBs), support delayed and limited viral replication, and fail to secrete detectable IFNλ1 secretion during ZIKV infection (Quicke et al., 2016; Tabata et al., 2016). This suggests that type III IFN may serve a protective role in restricting ZIKV replication within the placenta, but further study is needed to clarify potential cell type specific roles within the placenta.
ZIKV has developed several strategies to antagonize type I IFN signaling to evade the pressures of host innate immune responses. Recently, we demonstrated that human DCs, a target cell of mosquito-borne flaviviruses, are susceptible to productive viral replication across infection with African and Asian lineage ZIKV strains, yet these cells failed to produce detectable amounts of secreted type I or III IFN (Bowen et al., 2017). The defect was not due to a lack of activation of PRR signaling pathways as ZIKV-infected DCs strongly up-regulated transcripts for IFN-β, IFN-α and several antiviral genes (Bowen et al., 2017; Kumar et al., 2016). Interestingly, we found that ZIKV appears to selectively inhibit translation of type I IFN proteins, while translation of other antiviral host proteins remained intact. This blockade in type I IFN protein translation appears to be a unique feature of ZIKV, as WNV and YFV do not seem to block translation or secretion of type I IFNs (Bowen and Suthar, data not shown). Interestingly, another study suggests that ZIKV non-structural proteins may also inhibit type I IFN induction. Through over-expression studies, ZIKV NS1, NS4A, and NS5 were found to inhibit IRF3 and NF-κB signaling, although the precise mechanism is not yet clear (Kumar et al., 2016). Another study found that ZIKV NS1 and NS4B interact with TBK1 and impede activation of IRF3 (Wu et al., 2017). Combined, these studies demonstrate that ZIKV targets multiple points within the type I IFN induction signaling cascade.
ZIKV also counteracts type I IFN responses by antagonizing JAK/STAT signaling at multiple points. Recent work has demonstrated that ZIKV actively blocks STAT1 and STAT2 phosphorylation, a process that is critical for generation of the ISGF3 transcription factor complex and antiviral gene transcription (Bowen et al., 2017). However, the exact mechanism of this inhibition has yet to be determined. Similar to other mosquito-borne flaviviruses, Grant and colleagues observed that ZIKV targets human, but not murine, STAT2 for proteasome-dependent degradation (Grant et al., 2016b). Upon overexpression, the ZIKV NS5 protein, a critical component of viral RNA synthesis, interacts with human, but not murine STAT2 to promote its proteasomal degradation. While the mechanism of STAT2 degradation remains unclear, the host E3 ubiquitin ligase UBR4 is not involved, contrasting with the NS5 protein of the closely related DENV (Grant et al., 2016a; Kumar et al., 2016). Similar to DENV, the species specific degradation of STAT2 may explain the in vivo restriction of ZIKV in type I IFN-competent mice. In addition to NS5, overexpression of the ZIKV NS2B3 protein, particularly the helicase domain, also appeared to interfere with JAK/STAT signaling by interacting with JAK1 and targeting it for proteasomal degradation (Wu et al., 2017). As part of the arms race between virus and host, type I IFN signaling promoted the autophagic destruction of NS2B3 in a STAT1-dependent manner, thus limiting ZIKV replication. Despite these insights, the specific residues within ZIKV NS5 or NS2B3, as well as the importance of these viral proteins in the context of an intact virus remain unknown. Future studies that take advantage of the recently developed ZIKV infectious clones to generate viral mutants will be required to confirm the role of ZIKV viral proteins in antagonism of type I IFN signaling (Widman et al., 2017). Taken together, the ZIKV non-structural proteins have been shown to inhibit the type I IFN signaling pathway at multiple points to promote viral replication.
7. Summary
Over the past year and a half, there have been over 2,500 publications on Zika virus (as determined by a search on PubMed.gov on ‘Zika virus’ with a publication range from 1/1/2016 to present). Much of the research efforts have focused on clinical case reports, development of animal models, development and testing vaccines in phase I clinical trials, identifying novel antivirals, dissecting ZIKV pathogenesis and uncovering virus-host interactions. While these studies have provided a significant advance in our understanding of the biology of ZIKV, there is a dearth of studies examining the human immune response to ZIKV infection. This insight is critical to appropriately advance our understanding of the immune parameters that contribute to protective immunity, as well as symptomatic outcome during ZIKV infection. Currently, much of our knowledge relies on animal models, some of which lack critical components of innate immune signaling or lack robustness in statistical measurements (non-human primate studies), and in vitro infection studies in primary and cultured cells. Future studies should focus on immune profiling of ZIKV-infected patients through a combination of cellular analysis and multi-omics based approaches. Several key outstanding questions still remain to be addressed and should be the focus of future research efforts: 1) What impact do cross-reactive antibodies play in flavivirus experienced individuals in promoting ZIKV infection? 2) How does ZIKV cross the placenta and infect the developing fetus? 3) What are the viral and host factors that contribute to ZIKV persistence in the placenta and other immune-privileged organs (e.g. eyes and testes)? Addressing these questions will provide much needed clarity and understanding for ZIKV pathogenesis and infection outcome. Furthermore, this will provide critical insight for rational development of vaccines that take into account the impact of cross-reactive antibodies and cellular responses in flavivirus-experienced individuals.
Highlights.
Zika virus (ZIKV) is a neurotropic mosquito-borne flavivirus of significant public health concern
Humoral and cell-mediated responses correlate with protective immunity against ZIKV infection.
Cross-reactive antibodies and CD8+T cell may influence ZIKV pathogenesis and infection outcome.
ZIKV utilized a multifactorial process to antagonize the host type I IFN signaling pathway.
Acknowledgments
The Suthar laboratory is funded in part by National Institutes of Health grants U19AI083019, R56AI110516, R21AI113485, 2U19AI090023, U01AI131566, Emory University Department of Pediatrics Junior Faculty Focused Award, CCIV Pilot awards, Children's Healthcare of Atlanta, Emory Vaccine Center, and the Georgia Research Alliance.
Footnotes
The author declares no commercial or financial conflict of interest.
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