Table 2.

The base pair prediction performance on the fungal snoRNA dataset

Program	TPR	PPV	MCC
IntaRNA	0.61	0.53	0.56
RNAplex-a (Turner)	0.56	0.49	0.52
RNAplex-a (Andronescu)	0.74	0.69	0.71
RIblast (Turner)	0.57	0.49	0.53
RIblast (Andronescu)	0.66	0.60	0.62

Note: The columns correspond to the three evaluation criteria. The rows indicate the performance of each program. The bold values are the highest scores in each column.