Table 1.
Fungal carbohydrate metabolism and CAZy. EBSeq [42, 43] was used to estimate posterior probability of differential expression (PPDE) ≥ 0.95. A full DE transcript list including expression data, functional description (if available), gene ontology terms (if available) and secondary annotation (if available) is provided in Additional file 6
| Monosaccharide transporters | |||||
|---|---|---|---|---|---|
| Query id | Cont mean tpm | Treat mean tpm | FC | 1° annotation id | Subject description |
| c601571_g1_i1 | 0.33 | 275.43 | 830.24 | gi|751683823|gb|KIM33975.1| | Monosaccharide transporter (MST) |
| c601571_g1_i3 | 0.00 | 25.71 | High | gi|751683823|gb|KIM33975.1| | Monosaccharide transporter (MST) |
| c601571_g1_i7 | 0.00 | 18.19 | inf | gi|749760949|gb|KII85851.1| | Monosaccharide transporter (MST) |
| CAZy | |||||
| c601768_g1_i4 | 0.01 | 12.09 | 891.69 | tr|A8N526|A8N526_COPC7 | Exo-beta-1,3-glucanase (GH5) |
| c601246_g1_i2 | 0.00 | 9.29 | inf | tr|S7QIL0|S7QIL0_GLOTA | Glycoside hydrolase (GH13) |
| c601246_g1_i3 | 0.00 | 8.75 | inf | tr|S7QIL0|S7QIL0_GLOTA | Glycoside hydrolase (GH13) |
| c601246_g1_i1 | 0.00 | 3.40 | inf | tr|S7QIL0|S7QIL0_GLOTA | Glycoside hydrolase (GH13) |
| c598537_g2_i2 | 0.00 | 20.09 | inf | gi|695542974|ref.|XP_009543687.1| | Glycoside hydrolase family 13 protein |
| c600093_g2_i1 | 0.00 | 2.50 | inf | gi|646308860|gb|KDQ30003.1| | Glycoside hydrolase family 13 protein |
| c598962_g2_i1 | 0.00 | 4.02 | inf | gi|691791220|emb|CDO73299.1| | Glycoside Hydrolase Family 13 protein |
| c546152_g1_i1 | 0.00 | 7.98 | inf | tr|F8PDS7|F8PDS7_SERL9 | Glycoside hydrolase family 13/GT5 protein |
| c594633_g1_i2 | 0.11 | 50.90 | 449.23 | gi|751693072|gb|KIM43056.1| | Glycoside hydrolase family 131 protein |
| c569099_g1_i1 | 0.00 | 6.22 | inf | gi|595767974|ref.|XP_007262530.1| | Glycoside hydrolase family 16 protein |
| c601155_g2_i1 | 0.00 | 3.25 | inf | gi|751697951|gb|KIM47928.1| | Glycoside hydrolase family 16 protein |
| c601155_g2_i2 | 0.00 | 9.44 | inf | gi|751718111|gb|KIM67108.1| | Glycoside hydrolase family 16 protein |
| c601339_g1_i1 | 0.00 | 8.66 | inf | tr|M2QB49|M2QB49_CERS8 | Glycoside hydrolase family 3 protein |
| c594608_g1_i1 | 0.00 | 4.13 | inf | tr|S7Q7X9|S7Q7X9_GLOTA | Glycoside hydrolase family 38 protein |
| c601768_g1_i2 | 0.00 | 4.18 | High | gi|749771114|gb|KII95444.1| | Glycoside hydrolase family 5 protein |
| c601768_g1_i3 | 0.22 | 2.91 | 13.51 | gi|749771114|gb|KII95444.1| | Glycoside hydrolase family 5 protein |
| c598880_g1_i5 | 0.04 | 104.28 | 2617.19 | gi|660966484|gb|KEP50967.1| | Barwin-like endoglucanase GH45 |
| c600699_g2_i2 | 0.00 | 5.19 | inf | gi|761954826|gb|KIY74457.1| | Glycoside hydrolase family 45 protein |
| c600240_g5_i1 | 0.04 | 37.05 | 862.09 | gi|597903192|ref|XP_007298895.1| | Glycoside hydrolase family 72 protein |
| c597573_g1_i2 | 0.00 | 4.93 | inf | tr|M2RHY3|M2RHY3_CERS8 | Glycosyltransferase family 1 protein |
| c601034_g1_i3 | 0.00 | 5.05 | inf | gi|751699172|gb|KIM49104.1| | Glycosyltransferase family 15 protein |
| c601818_g1_i1 | 0.00 | 6.08 | inf | tr|F8NSE4|F8NSE4_SERL9 | Glycosyltransferase family 2 protein |
| c601727_g2_i2 | 0.00 | 4.46 | inf | gi|646307867|gb|KDQ29011.1| | Glycosyltransferase family 2 protein |
| c602102_g1_i1 | 0.00 | 1.47 | inf | gi|749763786|gb|KII88520.1| | Glycosyltransferase family 2 protein |
| c602018_g4_i1 | 0.00 | 21.01 | inf | gi|761950386|gb|KIY70060.1| | Glycosyltransferase family 20 protein |
| c593342_g2_i1 | 0.00 | 33.59 | inf | gi|754372083|gb|KIP04804.1| | Glycosyltransferase family 4 protein |
| c586703_g1_i3 | 0.00 | 7.27 | inf | gi|751716241|gb|KIM65247.1| | Glycosyltransferase family 48 protein |
| c593828_g1_i1 | 0.00 | 4.05 | inf | tr|G4T6Z6|G4T6Z6_PIRID | Pectate lyase 1 |
| c576776_g1_i2 | 0.05 | 2.53 | 50.56 | tr|R7SST1|R7SST1_DICSQ | Galactose oxidase (AA5) |
| c594647_g2_i1 | 0.20 | 25.38 | 127.24 | gi|752370879|gb|KIO28638.1| | Carbohydrate esterase family 12 protein |
| c592601_g1_i1 | 0.03 | 13.15 | 414.76 | gi|749760957|gb|KII85859.1| | Carbohydrate esterase family 4 protein |
| c600395_g1_i1 | 0.00 | 3.82 | inf | gi|691792079|emb|CDO72533.1| | Carbohydrate-binding module family 1/GH18 |
| c600797_g1_i1 | 0.00 | 21.07 | inf | tr|V2WEI0|V2WEI0_MONRO | Carbohydrate-binding module family 12 protein |
| c600797_g1_i4 | 0.00 | 6.68 | inf | gi|695558353|ref.|XP_009547634.1| | Carbohydrate-binding module family 12 protein |
| c590812_g2_i2 | 0.00 | 7.48 | inf | gi|751000067|gb|KIK42253.1| | Carbohydrate-binding module family 50 protein |
| EM pathway | |||||
| c598496_g1_i1 | 0.00 | 15.04 | inf | tr|E2M098|E2M098_MONPE | Glucose-6-phosphate isomerase |
| c596025_g1_i2 | 0.00 | 7.96 | inf | tr|S7Q9Q0|S7Q9Q0_GLOTA | Glucokinase regulator |
| c594601_g1_i2 | 0.00 | 13.43 | inf | gi|751180168|gb|KIL66119.1| | Hexokinase |
| c585806_g1_i1 | 0.02 | 18.89 | 1107.17 | gi|646397316|gb|KDQ61522.1| | Phosphoglucomutase |
| c602057_g2_i2 | 0.00 | 11.14 | High | gi|646396300|gb|KDQ60552.1| | Phosphoglycerate kinase |
| c602057_g2_i3 | 0.07 | 11.10 | 151.91 | tr|V2XST0|V2XST0_MONRO | Phosphoglycerate kinase |
| c598088_g2_i2 | 0.00 | 5.55 | inf | gi|749895786|gb|KIJ63485.1| | Phosphoglycerate mutase-like protein |
| c600469_g2_i1 | 0.00 | 10.71 | inf | gi|749764415|gb|KII89090.1| | Phosphoglycerate mutase-like protein |
| c572773_g2_i1 | 0.00 | 51.66 | inf | gi|695531349|ref.|XP_009540596.1| | Enolase |
| c596540_g1_i2 | 0.00 | 4.59 | inf | gi|646309757|gb|KDQ30900.1| | Pyruvate kinase |
| c600228_g1_i1 | 0.00 | 15.88 | inf | A0A0C9X171|A0A0C9X171_9AGAR | Fructose-1,6-bisphosphatase |
| c600228_g2_i1 | 0.00 | 3.03 | inf | gi|807746795|ref|XP_012178192.1| | Fructose-1,6-bisphosphatase |
| Trehalose and glycogen metabolism | |||||
| c593922_g1_i3 | 0.01 | 2.87 | 238.65 | tr|A8NBB7|A8NBB7_COPC7 | Trehalose-6-phosphate phosphatase |
| c593922_g1_i2 | 0.01 | 1.75 | 233.45 | tr|A8NBB7|A8NBB7_COPC7 | Trehalose-6-phosphate phosphatase |
| c590104_g1_i2 | 0.00 | 5.27 | inf | gi|576992104|gb|EUC64784.1| | Alpha,alpha-trehalose-phosphate synthase |
| c601514_g2_i2 | 0.00 | 8.92 | inf | gi|636619097|ref|XP_008040683.1| | Glycogen phosphorylase |
| c601447_g1_i3 | 0.00 | 24.27 | High | tr|S7PZV3|S7PZV3_GLOTA | Glycogen synthase |
| c601447_g1_i4 | 0.02 | 5.34 | 267.52 | tr|R7S2M9|R7S2M9_PUNST | Glycogen synthase |
| Pentose phosphate pathway | |||||
| c599283_g2_i1 | 0.06 | 23.65 | 403.23 | tr|S7QHH6|S7QHH6_GLOTA | Glucose-6-phosphate 1-dehydrogenase |
| c593556_g1_i1 | 0.00 | 4.43 | inf | tr|F8PCX3|F8PCX3_SERL9 | 6-Phosphogluconolactonase |
| c579299_g1_i2 | 0.00 | 4.57 | inf | gi|695543481|ref|XP_009543815.1| | 6-Phosphogluconate dehydrogenase |
| c596260_g2_i1 | 0.00 | 6.07 | inf | tr|S7QN86|S7QN86_GLOTA | 6-Phosphogluconate dehydrogenase, decarboxylating |
| c599261_g6_i1 | 0.40 | 29.50 | 73.50 | laccaria|B0DN26|B0DN26_LACBS | Transketolase |
| c586684_g1_i2 | 0.00 | 9.94 | inf | gi|807755903|ref|XP_012182746.1| | Transaldolase |
| Ethanol | |||||
| c595474_g1_i1 | 0.00 | 16.64 | inf | gi|754377558|gb|KIP10174.1| | Pyruvate decarboxylase |
| TCA cycle | |||||
| c578376_g1_i1 | 0.00 | 20.05 | inf | tr|A8N9T7|A8N9T7_COPC7 | Pyruvate carboxylase |
| c590892_g1_i1 | 0.00 | 16.91 | inf | gi|924125151|emb|CUA68456.1| | Pyruvate dehydrogenase E1 component subunit alpha |
| c602021_g6_i1 | 0.00 | 20.10 | inf | tr|D8PKQ0|D8PKQ0_SCHCM | Acetyltransferase component of pyruvate dehydrogenase |
| c569980_g1_i1 | 0.00 | 12.30 | High | tr|S8EDA9|S8EDA9_FOMPI | ATP-utilising phosphoenolpyruvate carboxykinase |
| c601865_g3_i1 | 0.00 | 21.12 | inf | tr|R7STC2|R7STC2_DICSQ | ATP-utilising phosphoenolpyruvate carboxykinase |
| c601865_g3_i2 | 0.00 | 9.71 | inf | tr|R7STC2|R7STC2_DICSQ | ATP-utilising phosphoenolpyruvate carboxykinase |
| c569980_g1_i2 | 0.09 | 16.00 | 168.90 | gi|749767591|gb|KII92023.1| | ATP-utilising phosphoenolpyruvate carboxykinase |
| c596905_g1_i4 | 0.00 | 12.95 | inf | tr|F8ND69|F8ND69_SERL9 | Malate dehydrogenase |
| c596978_g1_i2 | 0.01 | 18.99 | 1489.83 | gi|599119246|ref.|XP_007387111.1| | NAD-malate dehydrogenase |
| c596978_g1_i1 | 0.01 | 13.56 | 1360.27 | gi|599119246|ref.|XP_007387111.1| | NAD-malate dehydrogenase |
| c601738_g1_i3 | 0.00 | 9.89 | inf | gi|751717279|gb|KIM66280.1| | Succinyl-coa synthetase alpha chain, gdp-forming |
| c600881_g1_i4 | 0.01 | 1.61 | 299.16 | tr|M2RB43|M2RB43_CERS8 | Succinyl-CoA synthetase beta chain SSC-beta |
| c600756_g1_i1 | 0.00 | 11.35 | inf | gi|646392723|gb|KDQ57237.1| | Homocitrate synthase |
| c601939_g2_i2 | 0.05 | 13.42 | 261.20 | gi|754372092|gb|KIP04812.1| | Isocitrate dehydrogenase |
| c583773_g1_i1 | 0.00 | 5.65 | inf | gi|636616019|ref|XP_008039144.1| | Peroxysomal citrate synthase |
| c585571_g1_i2 | 0.03 | 2.64 | 81.61 | gi|751696020|gb|KIM45999.1| | Aconitase |
| c591611_g1_i1 | 0.00 | 10.96 | inf | gi|636618909|ref|XP_008040589.1| | Aconitate hydratase |
| c575147_g1_i1 | 0.00 | 5.73 | inf | gi|597981973|ref|XP_007363646.1| | 2-Oxoglutarate dehydrogenase mitochondrial precursor |
| c597062_g1_i2 | 0.00 | 16.03 | inf | gi|749834860|gb|KIJ12495.1| | Succinate dehydrogenase |
| c602048_g2_i2 | 0.00 | 5.52 | inf | gi|749830076|gb|KIJ08477.1| | Succinate dehydrogenase |
| c600915_g2_i1 | 0.07 | 13.16 | 190.79 | tr|M2PCH1|M2PCH1_CERS8 | Succinate dehydrogenase |
| c600002_g1_i4 | 0.00 | 4.55 | inf | tr|D8Q9I2|D8Q9I2_SCHCM | Fumarate reductase |
| c600002_g1_i1 | 0.00 | 17.05 | inf | gi|752345450|gb|KIO04521.1| | Fumarate reductase |
| Leading to AAs | |||||
| c601513_g2_i5 | 0.00 | 6.72 | inf | tr|M2PP80|M2PP80_CERS8 | Glutamine sythetase |
| c600930_g1_i1 | 0.00 | 9.88 | inf | tr|V2X687|V2X687_MONRO | Glutamate synthase |