Abstract
Podocyte dysfunction and loss is an early event and a hallmark of proteinuric kidney diseases. A podocyte’s normal function is maintained via its unique cellular architecture that relies on an intracellular network of filaments, including filamentous actin (F-actin) and microtubules, that provides mechanical support. Damage to this filamentous network leads to changes in cellular morphology and results in podocyte injury, dysfunction, and death. Conversely, stabilization of this network protects podocytes and ameliorates proteinuria. This suggests that stabilization of podocyte architecture via its filamentous network could be a key therapeutic strategy for proteinuric kidney diseases. However, development of podocyte-directed therapeutics, especially those that target the cell’s filamentous network, is still lacking, partly because of unavailability of appropriate cellular assays for use in a drug discovery environment. Here, we describe a new high-content screening-based methodology and its implementation on podocytes to identify paullone derivatives as a novel group of podocyte-protective compounds. We find that three compounds, i.e., kenpaullone, 1-azakenpaullone, and alsterpaullone, dose dependently protect podocytes from puromycin aminonucleoside (PAN)-mediated injury in vitro by reducing PAN-induced changes in both the filamentous actin and microtubules, with alsterpaullone providing maximal protection. Mechanistic studies further show that alsterpaullone suppressed PAN-induced activation of signaling downstream of GSK3β and p38 mitogen-activated protein kinase. In vivo it reduced ADR-induced glomerular injury in a zebrafish model. Together, these results identify paullone derivatives as novel podocyte-protective agents for future therapeutic development.
Keywords: drug discovery, high-throughput screening, kenpaullone, phenotypic assay, podocytes
INTRODUCTION
Podocytes are terminally differentiated epithelial cells that form the filtration barrier in the kidney glomeruli (40). Podocytes have a unique cellular morphology that is held together via highly specialized intracellular filaments that are composed of filamentous actin (F-actin), intermediate filaments, and microtubules. Podocytes use a specialized subcellular structure, foot processes, to wrap themselves around glomerular capillaries. A network of interdigitating foot processes interact with neighboring podocytes and form filtration slits, also known as slit diaphragm (43). Damage or reorganization of the intracellular filaments changes the cellular architecture and results in podocyte injury, foot process effacement, and loss. Given their central role in glomerular filtration, podocyte injury and loss is an early event in the disease process and is a hallmark of glomerular diseases (62). Thus podocyte is a key cellular target for developing novel therapeutics for glomerular diseases (47). Additionally, as podocyte morphology is essential for its biological function and viability, strategies that decrease rearrangement of the cellular cytoskeleton to protect the cellular architecture and morphology have been the key focus of drug discovery efforts in the last few years (18, 35, 47). However, a key roadblock in drug discovery efforts has been a lack of cell-based high-throughput assays to quantitatively examine changes in cellular cytoskeleton and podocyte morphology. To address these shortcomings in the field, we recently described a novel, imaging microscopy-based high-content screening (HCS) assay for podocytes for use in a drug discovery environment (35).
Here, we describe a new methodology for improved analysis of the data from such HCS assays and use this methodology to identify additional podocyte-protective compounds from our previous chemical screen (50). We show that a new, multiparametric analysis of data from our screen with a library of 2,121 unique compounds revealed 65 compounds as potential hits. Among them, we found kenpaullone, a small molecule currently under preclinical development for neurological diseases (67), as a novel hit compound. Furthermore, using a group of commercially available analogs of kenpaullone, we describe our identification of 1-azakenpaullone and alsterpaullone as novel and highly efficacious podocyte-protective agents. We also present data from a number of in vitro and in vivo assays that define GSK-3β inhibition as the primary molecular mechanism of action of this group of compounds in podocytes. They also show that small-molecule mediate reduction in F-actin and microtubule rearrangements has a beneficial effect. The results presented here offer new insights about implementing podocyte cell-based assays in a drug discovery environment and also provide kenpaullone, 1-azakenpaullone, and alsterpaullone as novel candidates for future development as therapeutics for glomerular diseases.
MATERIALS AND METHODS
Reagents.
All cell culture reagents, including RPMI 1640, fetal bovine serum (FBS), and penicillin/streptomycin solution, were purchased from Life Technologies (Carlsbad, CA). Rat tail collagen I (cat. no. 354236) for coating on tissue culture plates and assay plates to promote the attachment of podocytes was purchased from BD Biosciences (San Jose, CA). For Western blotting, the anti-p38 (cat. no. 9212), anti-phospho-p38 (Thr180/Tyr182) (cat. no. 9215), anti-GAPDH (cat. no. 2118), anti-JNK (cat. no. 9258), and the anti-phospho-JNK (Thr183/Tyr185) (cat. no. 4668) antibodies were obtained from Cell Signaling Technology (Danvers, MA); the anti-phospho-p38 (cat. no. sc-7972) and the anti-pJNK (cat. no. sc-6254) antibodies were obtained from Santa Cruz Biotechnology (Dallas, TX); the anti-acetylated tubulin antibody (cat. no. T7451) was purchased from Sigma (St. Louis, MO); the anti-β-catenin antibody (cat. no. 610154) was obtained from BD Transduction (San Jose, CA); and the anti-GAPDH antibody (cat. no. MAB374) was obtained from Millipore (Billerica, MA). For immunostaining, the anti-paxillin antibody (cat. no. 04-581) was obtained from Millipore, the Alexa Fluor 568-labeled donkey anti-rabbit IgG (cat no. A-10042) and the Alexa Fluor 647-labeled donkey anti-mouse IgG (cat no. A-31571) were obtained from Life Technologies, and the Alexa-488-labeled donkey anti-rabbit IgG (cat no. 711-545-152) was obtained from Jackson ImmunoResearch (West Grove, PA). Paullone (cat. no. sc-208152) was purchased from Santa Cruz Biotechnology; kenpaullone (cat. no. 1398) was purchased from Tocris Bioscience (Minneapolis, MN); p38 mitogen-activated protein kinase (MAPK) inhibitor SB203580 (cat. no. tlrl-sb20) was obtained from InvivoGen (San Diego, CA); and puromycin aminonucleoside (cat. no. P7130), 1-azakenpaullone (cat. no. A3734), alsterpaullone (cat. no. A4847), GSK3 inhibitor SB216763 (cat. no. S3442), and anisomycin (cat. no. A9789) were purchased from Sigma-Aldrich.
Image quantification and analysis.
Podocyte HCS assay has been described previously (50). Briefly, after cell culture in multiwell plates and treatment with various agents, podocytes were fixed with a solution of 4% paraformaldehyde in phosphate buffered saline (PBS) for 15 min at room temperature and subsequently washed three times with PBS. Next, cells were permeabilized using a solution of 0.1% Triton X-100 in PBS for 15 min at room temperature and stained with CellMask Blue (Life Technologies) for 1 h at room temperature. Subsequently, after washing with PBS, images of cells were acquired using an Opera High Content Screening system (PerkinElmer) using a ×10 objective. Data were analyzed using Columbus data management and analysis system (PerkinElmer). Nuclear region was defined by Method B having the common threshold 0.55 with area >30 μm and signal intensity >2,900. Cellular cytoplasm was defined by Method A with 0.15 individual threshold. Partially shown cells in each field were excluded from further analysis. A multiparametric analysis approach was used to calculate 216 features based on the images with CellMask stain. Area, roundness, width, length, and ratio of width-to-length of nucleus and cells were measured. Also, texture structure was quantified using the Symmetry properties, Threshold compactness, Axial properties, Radial properties and profile (STAR) method (49).
High Content Profiler (PerkinElmer), a module for Spotfire data analytics software (TIBCO Software, Palo Alto, CA), was used for the analysis of the multiparametric HCS data derived by Columbus system. Median interplate data normalization (using median values of negative controls) was performed across all of the screen’s plates. This was followed by ensemble-based tree classification, which is a selection and classification method based on the ensemble of decision tree classifiers (8). This supervised classification method places the sample compounds into two predicted classes based on the positive [puromycin aminonucleoside (PAN) + mizoribine (MZR)] and negative (PAN) controls.
For quantification of acetylated tubulin intensity, data from the anti-acetylated tubulin-stained cells were analyzed using the Columbus data management and analysis system, as above. The signal intensity around the nuclear membrane was determined using Profile 4/5 and was normalized per cell by multiplying with total anti-acetylated tubulin signal intensity.
Mouse podocyte culture.
Immortalized murine podocytes were cultured according to published protocols with slight modification (39). Briefly, the cells were incubated in tissue culture medium (RPMI 1640 medium with 10% FBS, 100 U/ml penicillin, and 100 µg/ml streptomycin) and mouse recombinant interferon-γ (cat. no. CR2041, Cell Sciences, Newburyport, MA), 50 U/ml for the first two passages and 20 U/ml for the later passages, in collagen-coated flasks at 33°C for proliferation. For differentiation, cells were thermo-shifted to 37°C and incubated without interferon-γ for 10–14 days. For assays in the 96-well plates, the cells were differentiated at 37°C in large (e.g., 75 or 150 cm2) tissue culture flasks for 7 days before seeding in the multiwell plates, and subsequently reseeded and incubated in multiwell plates for another 4 days.
Western blotting.
Cells were lysed in lysis buffer (20 mM Tris, 150 mM NaCl, 10 mM EDTA, 1% NP40, pH 7.5) containing protease inhibitors (cat. no. 11836153001, Roche Diagnostics, Indianapolis, IN) and phosphatase inhibitors (cat no. 78420, Thermo Fisher Scientific). LDS sample loading buffer and reducing agent (both from Thermo Fisher Scientific) were added to lysates, and the lysate was boiled at 95°C for 5 min. Proteins were separated by electrophoresis by using NuPAGE Novex 4–12% Bis-Tris protein gels (Thermo Fisher Scientific) and transferred to polyvinylidene difluoride membrane (Millipore). Subsequently, membranes were blocked with Odyssey blocking buffer (LI-COR Biosciences, Lincoln, NE) and incubated with primary antibody diluents and fluorophore-conjugated secondary antibody diluents. After washing of the membranes, fluorescence was detected using the Odyssey CLx Imaging system (LI-COR Biosciences).
Fluorescent immunostaining of cells.
Cultured podocytes were fixed using a solution of 4% paraformaldehyde in PBS for 15 min at room temperature, followed by permeabilization using a solution of 0.1% Triton X-100 (Sigma-Aldrich) in PBS for 15 min at room temperature. Subsequently, the cells were blocked using 5% donkey serum (cat. no. D9663, Sigma) for 1 h. After blocking, cells were incubated with the desired primary and fluorophore-conjugated secondary antibodies, respectively. HCS CellMask Blue (cat. no. H32720, Invitrogen) and Alexa Fluor 568 phalloidin (cat. no. A12380, Invitrogen) were incubated for staining nucleus/cytoplasm and F-actin, respectively. Fluorescence images were acquired using a Zeiss 700 LSM confocal microscope (Zeiss, Thornwood, NY) or Opera XL (PerkinElmer).
mRNA expression quantification.
Total RNA was extracted from cultured podocytes by using RNeasy Mini Kit (cat. no. 74104, Qiagen) according to manufacturer’s instructions. Extracted RNA was reverse transcripted to cDNA with SuperScript III (cat. no. 18080-051, Life Technologies). Quantitative real-time PCR (qRT-PCR) was performed using Power SYBR Green Master Mix (cat. no. 4367659, Applied Biosystems) with the following primer sets: Desmin, GTGGATGCAGCCACTCTAGC and TTAGCCGCGATGGTCTCATAC; Cd80, CTGCAAAGGACTTCAGAAACCT and AGGCTTCACCTAGAGAACCGT; Actb, GGCTGTATTCCCCTCCATCG and CCAGTTGGTAACAATGCCATGT. The qRT-PCR reaction was performed using a CFX Connect real-time PCR detection system (Bio-Rad, Hercules, CA). Relative expression of Desmin and Cd80 was normalized to the expression level of β-actin mRNA.
Scratch wound-healing migration assay.
The scratch wound-healing migration assay was performed as previously described (50), with minor modifications. Briefly, mouse podocytes were differentiated at 37°C for 10–14 days. Subsequently, ~20,000 cells were seeded in each well of a 96-well plate and cultured for 6 h. Subsequently, a uniform scratch wound was created in the cell monolayer near the marked lines by sing a 10-μl pipette tip. Each well near the scratch wound in the monolayer was imaged at an initial time point by using the Opera HCS imaging system. Subsequently, the cells were incubated with various compounds at 37°C for 24 h, washed, fixed with 4% paraformaldehyde, and stained with CellMask Blue solution and reimaged. The images of pre- and posttreated cells were aligned to define the initial wound boundaries to quantify the number of cells that migrated into the area of the scratch wound.
Caspase 3/7 activity measurement.
Differentiated mouse podocytes were seeded in 96-well plates. After treatment with various agents for 24–48 h at 37°C, Caspase-Glo 3/7 working solution containing a luminogenic substrate (cat. no. G8090, Promega, Madison, WI) was added to each well. Subsequently, luminescence from each well was measured using EnSpire microplate reader (PerkinElmer).
Annexin V adhesion assay.
Differentiated mouse podocytes were treated for 72 h with various compounds according to concentrations presented in the figure legend of Fig. 6. Cells were detached using trypsin-EDTA (Life Technologies) and incubated with FITC-annexin V (cat. no. 640906, BioLegend, San Diego, CA) and propidium iodide (PI; cat. no. P3566, Life Technologies) for 15 min in annexin V binding buffer (cat. no. 422201, BioLegend). Flow cytometry was performed using BD FACS Canto II (BD Biosciences) to detect annexin V- and/or PI-bound cells. Apoptotic cells were defined as cells that were annexin V positive and PI negative.
Zebrafish embryo-based glomerular injury assay.
Zebrafish studies were performed at the Medical University of South Carolina (MUSC) Zebrafish Core Facility. All animal work was performed under an IACUC-approved protocol from MUSC, protocol number 3364. Egg medium (E3) was used to grow zebrafish at 28.5°C. Adriamycin at a final concentration of 30.3 mg/l was used at 8 h postfertilization (hpf) in E3 growth medium to induce glomerular injury as described previously (25, 69). 1-Azakenpaullone (0.25 µM), alsterpaullone (0.25 µM), SB216763 (0.5 µM), or SB203580 (1 µM) were given in the medium at 8 hpf. Adriamycin was removed at 48 hpf, and the fish were kept in normal E3 medium for 72 hpf. The images were collected in a dissecting Leica microscope for the phenotypic analysis. Quantification of pericardial edema and whole body area were performed with images of zebrafish by using ImageJ software (National Institutes of Health, Bethesda, MD). Statistical analysis was performed using Prism 6 software (GraphPad, La Jolla, CA).
Statistical analysis.
For multiple comparisons, one-way ANOVA with Tukey’s or Dunnett’s multiple comparison test was used. A P value of <0.05 was considered statistically significant. Results are represented as means ± SE.
RESULTS
Identification of kenpaullone as a podocyte-protective compound from a podocyte-based HCS assay.
Confocal microscopy images of cells contain a large body of useful information about the state of the cells, including cell size, roundness and shape, nuclear size and shape, and cytoskeletal textures and intensity. Analysis and quantification of such parameters can be used to establish a cellular phenotype. Given that cellular morphology is essential for podocyte function and that aberrant changes in podocyte morphology associate with podocyte damage, we recently developed and described a novel HCS assay using podocyte morphology (35). In this assay, we cultured immortalized mouse podocytes in 96-well optical assay plates. We used puromycin aminonucleoside (PAN) treatment to induce podocyte damage in vitro and performed cotreatment with mizoribine (MZR) to protect podocytes from PAN damage (58), for use as a positive control in the assay. Subsequently, using a confocal microscopy-based automated imaging system (Opera HCS system, PerkinElmer), we imaged fluorescently labeled cells to establish quantitative parameters that distinguish changes in cellular phenotypes between cells treated with PAN and PAN+MZR, respectively. To identify novel podocyte-protective compounds, we utilized a library of 2,121 small-molecule compounds on PAN-treated podocytes and quantified single cellular parameters, such as cell roundness and the number of F-actin fibers per cell. From this assay, we previously reported on our identification of 24 unique podocyte-protective compounds, including the integrin β1 agonist compound pyrintegrin that we subsequently validated as a novel podocyte-protective agent in vitro and in vivo (35).
However, given that microscopy images from such HCS assays contain rich data, we wondered whether newer approaches could be used for multiparametric analysis of that data set to identify additional protective compounds. Toward that aim, here we describe our development of a multiparametric approach and its use in identification of additional compounds as hits from our screen (Fig. 1A). First, we performed analysis of the cellular images using multiple parameters [compared with analyzing only a single parameter before (35)] from the chemical screen with 2,121 compounds to calculate quantitative values for 216 cellular features, including area, roundness, width, length, and the width-to-length ratio of each cell and its nucleus using Columbus software (PerkinElmer). We further quantified texture structure using STAR method (49). Next, this multiparametric data set was analyzed using the High Content Profiler of Spotfire software (TIBCO Software). This module identified five features that showed high discrimination between PAN-damaged podocytes and the podocytes protected from injury with MZR cotreatment. These five measurement modules within the High Content Profiler directory were Cell Profile 1/5 SER Edge, 2/5 SER-Ridge, 4/5 SER-Ridge, 2/5 SER-Bright, and Cell Radial Mean Ratio SER Edge. This was followed by a supervised classification method, the ensemble-based tree classification, which is a feature selection and classification method based on the ensemble of decision tree classifiers (8), that placed data from the screen into two predicted classes based on the positive (PAN+MZR) and negative (PAN) controls. This methodology identified 65 compounds as potential hits in this assay (Table 1). To visually present this data, we generated the principle component analysis (PCA) visualization graph by using the first two principle components from all of the image analysis features (Fig. 1B). PCA is a statistical method that transforms a number of possibly correlated variables into a smaller number of uncorrelated ones, called principal components. The first principal component explains the maximum possible variability in the data, and each succeeding component accounts for as much of the remaining variability as possible. A common application of PCA is to find relationships in a multiparametric data set by projecting it into a new reduced space (usually two dimensional) that retains the main properties of the data. The two-dimensional PCA graph in Fig. 1B shows that PAN-damaged cells (red dots) are well segregated from the PAN+MZR-treated cells (positive control, yellow dots) in this multiparametric analysis. Here, the 65 hit compounds identified using this methodology (positive predicted class) are represented as dark green dots, while 783 negatively classified compounds are represented in blue. Known podocyte-protective compounds such as glucocorticoids (10) are included in the hits. Analysis of the list of hit compounds identified kenpaullone, a compound that is annotated as a GSK-3β inhibitor and is currently under preclinical development as a therapeutic for amyotrophic lateral sclerosis (ALS) (38, 67), as a top hit. Kenpaullone has not yet been studied in podocytes. Given that it is currently under preclinical development and thus has high translational potential, and since GSK-3β is a validated target in podocytes (5, 65, 66, 70), we decided to further investigate kenpaullone’s efficacy and its mechanism of action in podocytes (Table 1).
Table 1.
Compound Name | Known Bioactivity |
---|---|
Kenpaullone | GSK-3β inhibitor |
Agelasine | Cytotoxic, antineoplastic |
Antimycin A | Antifungal, antiviral, interferes in cytochrome oxidation |
Berberine chloride | Antiarrhythmic, α2 agonist, cholinesterase |
Derrusnin | Mechanism of action unknown |
Mundulone acetate | Mechanism of action unknown |
Salicyl alcohol | Anesthetic (local), anti-inflammatory |
1R,2S-Phenylpropylamine | Decongestant |
2-Aminoguanidine hemisulfate | Nitric oxide synthase inhibitor |
3,6-Dimethoxyflavone | Mechanism of action unknown |
4,4′-Diisothiocyanostilbene-2,2′-sufonic acid sodium salt | ATP transport inhibitor, anion transport inhibitor, antiulcer |
5-Hydroxy-2′,4′,7,8-tetramethoxyflavone | Mechanism of action unknown |
6,4′-Dihydroxyflavone | Antihemorrhagic |
6α-Methylprednisolone acetate | Glucocorticoid |
Aminoethylisothiourea dihydrobromide | Nitric oxide synthase inhibitor |
Apotoxicarol | Mechanism of action unknown |
Bisabolol | Mechanism of action unknown |
Bromopride | Antiemetic |
Budesonide | Antiinflammatory |
Carapin-8 (9)-ene | Mechanism of action unknown |
Carbetapentane citrate | Antitussive |
Cinchonine | Antimalarial |
Clenbuterol hydrochloride | Bronchodilator, β-2 adrenergic agonist |
Coniferyl alcohol | Mechanism of action unknown |
Curcumin | Antiinflammatory, antifungal, lipo/cyclooxygenase inhibitor |
Desacetylcolforsin | Mechanism of action unknown |
Embelin | Anthelmintic, oral contraceptive |
Epiandrosterone | Mechanism of action unknown |
Epoxy (1, 11)humulene | Mechanism of action unknown |
Ethaverine hydrochloride | Antispasmodic |
Fenoterol hydrobromide | β-Adrenergic agonist |
Gardenin B | Mechanism of action unknown |
Ginkgolide A | Antibacterial |
Gossypin | Mechanism of action unknown |
Halcinonide | Glucocorticoid, antiinflammatory |
Hesperidin | Sweetener |
Hexamethylquercetagetin | Mechanism of action unknown |
Hinokitiol | Antifungal, metaloprotease inhibitor, DNA synthesis inhibitor |
Isoliquiritigenin | Aldose reductase inhibitor, antineoplastic, antiinflammatory |
Lawsone | Mechanism of action unknown |
Lobeline hydrochloride | Antiasthmatic, respiratory stimulant |
Lorglumide sodium | Cholecystokinin (CCK) receptor antagonist |
Madecassic acid | Wound healing |
Methoprene (S) | Ectoparasiticide |
Mycophenolic acid | Antineoplastic |
Nobiletin | Mechanism of action unknown |
Piperine | Analeptic, antibacterial |
Pridinol methanesulfonate | Anticholinergic |
Pteryxin | Muscle relaxant |
Quercetin tetramethyl (5,7,3′,4′) ether | Mechanism of action unknown |
Racephedrine hydrochloride | Bronchodilator, decongestant |
Resveratrol | Antifungal, antibacterial |
Ritodrine hydrochloride | Muscle relaxant (smooth) |
Sennoside B | Cathartic |
Sinensetin | Mechanism of action unknown |
Sulfamethoxazole | Antibacterial, antipneumocystis |
Terbutaline hemisulfate | β-Adrenergic agonist, bronchodilator |
Thiodiglycol | Antineoplastic, alkylating agent |
Tolnaftate | Antifungal |
Triamcinolone | Glucocorticoid |
Triamcinolone acetonide | Antiinflammatory |
Triptophenolide | Mechanism of action unknown |
Paullone derivatives protect podocytes by suppressing cytoskeletal changes and signaling downstream of GSK-3β.
Kenpaullone belongs to the paullone family of small-molecule compounds (31). To study if other members of the paullone family have podocyte-protective activity, we obtained four different paullones—paullone, kenpaullone, 1-azakenpaullone, and alsterpaullone (Fig. 2A)—from commercial sources and tested them for their efficacy in protecting podocytes from PAN injury in vitro. We found that three compounds—alsterpaullone, kenpaullone, and 1-azakenpaulone—protected podocytes from PAN damage in a dose-dependent fashion. Each compound significantly reduced cell roundness and increased number of F-actin fibers per cell in podocytes (Fig. 2B and Supplementary Fig. S1). On the other hand, paullone showed no protective effect. As with published studies with motor neurons (38), kenpaullone, as well as alsterpaullone, and 1-azakenpaulone, showed dose-dependent protection of podocytes from injury. They showed optimal efficacy at concentrations <5 μM, whereas concentrations higher than 5 μM showed loss of efficacy due to compound precipitation. Confocal microscopy-based imaging confirmed the protection of F-actin stress fibers and focal adhesions in PAN-injured podocytes by alsterpaullone, kenpaullone, and 1-azakenpaullone (Fig. 2C), as compared with vehicle DMSO-treated cells. Mizoribine and our recently discovered agent, integrin β1 agonist pyrintegrin, also showed a high level of protection and served as positive controls. GSK-3β is a direct target of kenpaullone (4), suggesting GSK-3β inhibition as the primary mechanism behind the efficacy of these paullone derivatives in podocytes. GSK-3β is the predominant GSK-3 isoform in podocytes, and signaling downstream of GSK-3β is increased during podocyte injury (9, 42, 66, 70), resulting in increased oxidative stress, mitochondrial dysfunction, and podocyte apoptosis (9). To confirm that GSK-3β inhibition is protective in this PAN injury-based in vitro model, we utilized a known GSK-3β inhibitor, SB216763 (12), and found that it also protected podocytes from PAN injury (PAN+GSK3i, Fig. 2C). Finally, as the activation of p38 MAPK is a common upstream mechanism in podocyte injury, including PAN injury (29), we tested a p38 inhibitor, SB203580 (68), in this assay and found that it too protected podocytes in this assay by reducing F-actin cytoskeletal rearrangement and preventing the loss of focal adhesions (PAN+p38i, Fig. 2C).
To maintain their cellular architecture, podocytes also utilize microtubules and intermediate filaments in the cell body and primary processes (43), in addition to the densely accumulated actin filaments in their foot processes. Microtubules are comprised of polymerized heterodimers of α- and β-tubulin. Immunofluorescence staining of immortalized murine podocytes with an anti-acetylated tubulin antibody showed that they radiate from the juxtanuclear region and extend toward peripheral area in healthy podocytes (Fig. 3A). To quantify, we measured signal intensity of acetylated tubulin around the nuclear membrane (Fig. 3K). As expected, PAN treatment induced microtubule rearrangement and significantly reduced the microtubule fiber density in podocytes (Fig. 3B). As with F-actin stabilization, the control compounds mizoribine and pyrintegrin, as well as GSK-3β inhibitor SB216763 and the p38 inhibitor SB203580 also showed protection of microtubules, whereas paullone did not. Notably, we found that kenpaullone, 1-azakenpaullone, and alsterpaullone also significantly protected podocytes from the PAN injury-mediated microtubule rearrangements (Fig. 3, F–H), suggesting that their effects extended to protecting the microtubule architecture in cells. Thus the newly discovered protective compounds help maintain podocyte cellular architecture and shape by targeting key intracellular structural elements. Collectively, these studies suggest that three paullone derivatives protect podocytes from PAN injury, although they do so with varying degrees of efficacy. Among them, alsterpaullone showed the strongest protective effect at the lowest concentration (<5 μM) (Fig. 2B). Therefore, we chose alsterpaullone for further mechanistic studies and in vivo experiments.
Podocyte-protective effects of alsterpaullone.
Podocyte injury results in gene expression changes, including significant upregulation in Desmin and Cd80 expression levels (16, 46, 52). Real-time quantitative RT-PCR of PAN-treated podocytes showed significantly increased mRNA expression of Desmin and Cd80, which was reversed upon cotreatment with alsterpaullone (Fig. 4A). Podocyte injury also results in increased cell motility (60). We found that PAN injury-mediated increase in podocyte migration and wound closure (3, 34, 35, 48) was also significantly reduced by cotreatment of cells with alsterpaullone, as measured using a scratch wound-healing assay (Fig. 4B). This suggests that alsterpaullone-dependent protection of cellular cytoskeleton results in a functional protection of podocytes.
Alsterpaullone suppresses PAN injury-mediated changes in β-catenin expression and JNK and p38 phosphorylation.
GSK-3β activation leads to degradation of β-catenin through a ubiquitin/proteasome-dependent pathway (1, 41), implicating that GSK-3β inhibition would protect β-catenin expression. As it is involved in the formation of cadherin-based adherens junctions, stabilization of β-catenin is highly beneficial in maintaining cytoskeletal interaction (22), epithelial integrity (6), and cell adhesion (57). Immunofluorescent staining of murine podocytes with anti-β-catenin antibody showed a significant reduction in β-catenin expression on PAN injury, as compared with the control cells, and that cotreatment with alsterpaullone or GSK3β inhibitor SB216763 resulted in significant protection against this PAN-induced loss of β-catenin to a similar extent (Fig. 5A). PAN injury also leads to increased activation of MAP kinases JNK and p38 via phosphorylation of JNK at Thr183/Tyr185 and of p38 at Thr180/Tyr182 (Fig. 5B) (15, 44a, 33, 56). Alsterpaullone and the GSK-3β inhibitor SB216763 significantly decreased phosphorylation of JNK and p38 in PAN-injured podocytes (Fig. 5B).
Alsterpaullone reduces apoptosis in PAN-injured podocytes.
Given that both GSK-3β (42) and p38 signaling pathways regulate cellular apoptosis (59), and that alsterpaullone suppresses the GSK-3β signaling and reduces p38 phosphorylation, we wondered if part of alsterpaullone’s efficacy is due to inhibition of podocyte apoptosis, a common response to stressful stimuli in podocytes (40). As caspase 3 and 7 proteases are key players in apoptosis and their activity determines the level of cellular apoptosis (14, 51), we quantified caspase 3/7 activity by using a luminogenic caspase-3/7 substrate as a measure of podocyte apoptosis. Whereas PAN treatment significantly increased caspase 3/7 activity relative to healthy control cells, podocyte cotreatment with alsterpaullone, GSK3β inhibitor SB216763, or p38 inhibitor SB203580 significantly reduced caspase 3/7 activity (Fig. 6A), suggesting protection from apoptosis. Furthermore, an increase in podocyte apoptosis on treatment with additional damaging agents, such as TGF-β1 that is involved in podocyte damage in diabetic nephropathy (11, 23, 44, 50, 55, 63, 71) (Supplementary Fig. S2A) or with p38 agonist anisomycin that induces stress-mediated cellular apoptosis (54) (Supplementary Fig. S2B), was also similarly and significantly reduced by alsterpaullone, SB216763, and SB203580. We further confirmed this protective activity of alsterpaullone against apoptosis by using a flow cytometry-based annexin V affinity assay (Fig. 6B), where PAN injury resulted in apoptosis of ~30% of podocytes that was significantly reduced by alsterpaullone, SB216763, and SB203580 (Fig. 6B, panels c–e). There was no significant difference in necrotic cell number (PI-positive cells) between various treatment conditions. Together, these results suggest that alsterpaullone-mediated inhibition of GSK-3β suppresses downstream p38 activation and pro-apoptotic signaling in podocytes.
Alsterpaullone and 1-azakenapaullone protect against glomerular damage in zebrafish.
Adriamycin (ADR)-induced nephropathy is a well-established glomerular injury model. This anthracycline derivative antibiotic causes proteinuria and FSGS-like phenotype in rodents (36) and was shown to induce glomerular damage in zebrafish embryos (69). Phenotypic characterization of zebrafish embryos in this model includes analysis of body axis curvature, pericardial edema, and whole body edema (2, 13, 19, 30). Pericardial edema in zebrafish embryo is followed by loss of kidney function, because the pronephric kidney in these animals regulates osmolality (21, 27). As we recently showed, ADR-induced injury resulted in moderate curved body axis in animals (2). Treatment of zebrafish embryos with ADR resulted in approximately 60% of embryos with curved body axis, while none of the untreated embryos presented with curved body axis (Fig. 7A). We also found that cotreatment of embryos with either 1-azakenpaullone (0.25 µM), alsterpaullone (0.25 µM), SB216763 (0.5 µM), or SB203580 (1 µM) in the presence of ADR showed significant reduction in the curved body axis, with very few embryos (0 to 4%) showing curved body axis (Fig. 7A). We also estimated the level of pericardial edema by quantifying cardiac area per total body area as another measure of kidney dysfunction. This cardiac to total body area ratio was significantly increased in ADR-treated embryos (Fig. 7B). However, cotreatment with either 1-azakenpaullone, alsterpaullone, GSK-3β inhibitor SB216763, or p38 inhibitor SB203580 showed a significant reduction in the ratio of cardiac/total body area (Fig. 7B), suggesting protection from ADR-mediated kidney in vivo damage by these compounds.
DISCUSSION
Healthy podocytes are central for preserving a normal kidney function. Podocytes create a stable filtration barrier in the glomeruli by using their unique cellular shape that is maintained with the help of a number of intracellular molecular fibers. Chief among them are the F-actin and microtubules, which provide structural elements for podocytes’ cellular architecture. Rearrangement or damage of the integrity of these cytoskeletal structures, due to genetic, circulating exogenous, or endogenous factors, greatly alters the cellular morphology that results in foot processes effacement, a hallmark of glomerular diseases (Fig. 8) (45). Conversely, prevention of damage or rearrangement of F-actin and microtubule assemblies protects podocytes from injury and death in vitro and ameliorates proteinuria in vivo (24). Thus recent efforts have focused on identifying novel agents that protect podocyte cytoskeleton from injury as a promising approach to treating glomerular diseases. Toward that end, we recently described a first HCS-based phenotypic assay to discover novel podocyte-protective compounds from a chemical screen with a library of 2,121 unique compounds (35). Here, we extend our previous studies by performing an improved, multiparametric analysis of the imaging data set from our previous screen to identify a novel family of compounds as podocyte-protective agents. We found that an unbiased, multiparametric approach is able to identify 65 unique compounds as potential hits that protect podocytes from PAN injury-mediated damage in vitro. Among them, we found kenpaullone to be a top hit. Given that kenpaullone is currently under preclinical development as a therapeutic for neurological diseases (67), and that it has been shown to be an inhibitor of signaling by GSK-3β (31, 37), which is a validated target in podocytes (5, 65, 66, 70), we further investigated its mechanism of action in podocytes in vitro. We also studied additional commercially available analogs in the paullone family of compounds. We found that while kenpaullone and two other paullone derivatives (1-azakenpaullone and alsterpaullone) protected podocytes from PAN-induced injury in dose-dependent fashion, paullone was ineffective. Our studies also showed alsterpaullone to be the most potent out of these three derivatives in vitro. This is also in accordance with it being reported to be the most potent inhibitor of GSK-3β in literature, with an IC50 value of 4 nM, which compares favorably as compared with the IC50 values of kenpaullone (23 nM), 1-azakenpaullone (18 nM), and paullone (620 nM), as well as the selective GSK-3β inhibitor SB216763 (34 nM) (12, 31, 37). Emerging studies suggest that podocyte damage also results in reorganization of microtubules (24, 28, 61, 64), in addition to the changes in the F-actin cytoskeleton, that together significantly affect cell shape and motility. Our cell-based studies presented here further showed that these three paullone derivatives suppressed reorganization of the intracellular F-actin and microtubule assemblies. This further suggests that stabilization of such intracellular protein networks is feasible via small molecules, which could lead to newer strategies for maintaining a podocyte’s cellular architecture and shape.
We also found that alsterpaullone treatment in vitro reduced mRNA expression of podocyte damage markers and cell motility that was induced in injured podocytes, providing new insights into its roles on regulating cell and cytoskeleton morphology. Furthermore, we found that alsterpaullone altered signaling downstream of GSK-3β and p38. PAN-mediated podocyte injury increased GSK-3β and p38 activity, which is consistent with previous reports suggesting that phosphorylation of GSK-3β and p38 is altered in podocytes in rodent models of glomerular injury and in patients, partly via GSK-3β-dependent modulation of focal adhesion dynamics and p38-mediated actin reorganization (5, 29, 65). Podocyte damage also reduced β-catenin protein expression that is regulated by GSK-3β (7, 20, 26). Additionally, JNK was activated in mouse podocytes damaged by PAN. It has been previously shown that GSK-3β activates JNK, which leads to increased apoptosis (53). Alsterpaullone and SB216763 increased β-catenin expression and reduced phosphorylation of JNK and apoptosis. These findings support previous findings that GSK-3β activation in injured podocytes is damaging to cells and that inhibition of GSK-3β protects podocytes. These studies, in concert with our findings, show the broad pathological and potentially therapeutic significance of GSK-3β inhibitors. Additionally, recent studies show that GSK-3β is linked to an aggressive form of amyotrophic lateral sclerosis (ALS), a neurodegenerative disease, and that a small-molecule screen identified kenpaullone (38, 67) and other GSK-3β inhibitors (67) as novel agents to rescue functional deficits in patient derived neuronal cells. This has initiated new efforts for developing kenpaullone as a potential therapeutic for ALS (67). Furthermore, our in vivo experiments using ADR-induced glomerular injury in a zebrafish as a model system showed that alsterpaullone and 1-azakenpaullone significantly reduced injury in the model organism. Together these results identify paullone derivatives as novel podocyte-protective agents and suggest alsterpaullone as a highly promising new agent for future therapeutic development for kidney diseases.
However, the in vitro and the zebrafish-based model systems used in the identification of compounds here have many limitations and are not predictive of clinical efficacy of these agents. Future studies using additional model systems, including human cell-based assays and murine models of glomerular injury, are needed.
In summary, we describe here further development of a podocyte cell-based HCS assay that is designed to carefully assess podocyte phenotype. We believe that the newer multiparametric approaches are well suited for data sets from imaging-based screening assays. Our identification of paullone derivatives as novel podocyte-protective compounds also sets the stage for their future development to treat proteinuric kidney diseases. Our studies also show that both F-actin and microtubule-based filamentous networks can be stabilized in podocytes to protect cells from injury and death (Figure 8). Future research will fully elucidate the underlying mechanism of action. Finally, we believe that the methodologies presented here will also be useful in phenotypic screens with other cell types.
GRANTS
This work was supported in part by National Institutes of Health Grants R01 DK-084195 and R01 HL-109582 (to V. Gupta), R01 DK-106512 and R01 DK-107984 (to V. Gupta and J. Reiser), and R01 DK-087956 (to D. Nihalani); the Nephcure Foundation; and with resources from the Rush University Medical Center.
DISCLOSURES
V. Gupta and J. Reiser are inventors on pending patents related to this study and have the potential for financial benefit from their future commercialization.
AUTHOR CONTRIBUTIONS
H.W.L., D.N., and V.G. conceived and designed research; H.W.L., E.A., M.M.A., and K.Q. performed experiments; H.W.L., E.A., M.M.A., K.Q., S.M., A.P., A.M., and D.N. analyzed data; H.W.L., E.A., K.Q., and D.N. interpreted results of experiments; H.W.L., E.A., M.M.A., K.Q., S.M., A.P., A.M., D.N., and V.G. prepared figures; H.W.L., E.A., J.R., D.N., and V.G. drafted manuscript; H.W.L., E.A., D.N., and V.G. edited and revised manuscript; H.W.L., E.A., M.M.A., K.Q., S.M., J.R., D.N., and V.G. approved final version of manuscript.
ACKNOWLEDGMENTS
We thank M. Hafeez Faridi, Xiaobo Li, Terese Geraghty, Nicholas J. Tardi, Hatem Elshabrawy, and Tristan Hays for generous technical help and helpful discussions.
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