Abstract
Background
Marek’s disease virus (MDV) resides in the genus Mardivirus in the family Herpesviridae. MDV is a highly contagious virus that can cause neurological lesions, lymphocytic proliferation, immune suppression, and death in avian species, including Galliformes (chickens, quails, partridges, and pheasants), Strigiformes (owls), Anseriformes (ducks, geese, and swans), and Falconiformes (kestrels).
Case presentation
In 2015, two red-crowned cranes died in Nanjing (Jiangsu, China). It was determined that the birds were infected with Marek’s disease virus by histopathological examination, polymerase chain reaction (PCR), gene sequencing and sequence analysis of tissue samples from two cranes. Gross lesions included diffuse nodules in the skin, muscle, liver, spleen, kidney, gizzard and heart, along with liver enlargement and gizzard mucosa hemorrhage. Histopathological assay showed that infiltrative lymphocytes and mitotic figures existed in liver and heart. The presence of MDV was confirmed by PCR. The sequence analysis of the Meq gene showed 100% identity with Md5, while the VP22 gene showed the highest homology with CVI988. Furthermore, the phylogenetic analysis of the VP22 and Meq genes suggested that the MDV (from cranes) belongs to MDV serotype 1.
Conclusion
We describe the first molecular detection of Marek’s disease in red-crowned cranes based on the findings previously described. To our knowledge, this is also the first molecular identification of Marek’s disease virus in the order Gruiformes and represents detection of a novel MDV strain.
Keywords: Marek’s disease virus, Red-crowned crane, Clinical necropsy, PCR, Homology
Background
The red-crowned crane (Grus japonensis) is classified as an endangered species with a small global population of 1830 mature individuals [1]. The red-crowned crane breeds in south-eastern Russia, north-east China, Mongolia, and eastern Hokkaido, Japan [2]. The Russian and Chinese populations mainly migrate to the Yellow River Delta and the coast of Jiangsu province, China, and the demilitarized zone of North Korea/South Korea in winter [3]. The number of over wintering cranes in China is now only 8% of what it was in the 1980s due to habitat degradation [4]. This also leads to the overconcentration of cranes at a few sites, which therefore decrease the genetic diversity [5]. The small population and low genetic diversity make this species especially vulnerable to epidemic diseases.
Marek’s disease (MD) is a highly contagious disease, characterized by immunosuppression, neurological disorder, CD4+ T cells transformation and eventual tumor formation in peripheral nerves and visceral organs [6]. The causative agent of MD is Marek’s disease virus (MDV) which is a member of the genus Mardivirus belonging to the subfamily Alphaherpesvirinae of the family Herpesviridae. MD was first reported in chicken by Josef Marek in 1907 [7], and is prevalent throughout the world. Later, it was also reported in Galliformes (such as turkeys [8], quails [9] and pheasants [10]), Strigiformes (owls), Anseriformes (ducks, geese and swans) and Falconiformes (kestrels). The most important natural hosts for MDV are domestic and wild chicken, including game fowl [11], native breeds [12] and jungle fowl [13]. MDV contains three serotypes: MDV-1 (GaHV-2), MDV-2 (GaHV-3) and MDV-3 (MeHV-1) [14]. However, only MDV-1 can induce disease in chicken, whereas MDV-2 and MDV-3 are avirulent and are used as vaccines. Symptoms of MD depend on the age of the bird [15, 16]. For example, young chickens infected with virulent MDV strains may exhibit high mortality in 8–16 days post infection with early mortality syndrome [17]. MDV can be transmitted horizontally through aerosols and enter the host through the respiratory tract, but it cannot be transmitted vertically from chicken to eggs [18]. The infectious virus particles replicate in epithelial cells of the feather follicles, and then are shed to the environment with the skin dander [19]. MDV in the dust survives for at least several months at room temperature [20]. Thus, skin dander, house dust, feces, and saliva can be a source of infection. Because cross-species spreading of the virus is possible, this mode of transmission enables it to infect an even broader spectrum of hosts [21]. Despite several cases of herpesvirus infection in cranes that were previously reported [22, 23], there is a lack of molecular evidence on MDV infection and knowledge of which species are infected.
This article reports the molecular detection of a novel MDV isolate in the red-crowned crane. It is also the first molecular determination of MDV from individual red-crowned cranes (Grus japonensis), indicating that red-crowned cranes can be infected by MDV.
Case presentation
In August 2015, reduced feed consumption was observed in a 2-month-old red-crowned crane (crane A) that was bred and incubated in Hongshan Forest Zoo in Nanjing, China. After segregation and palliative treatment, it exhibited astasia and then died. Subcutaneous palpation examination revealed many diffuse soybean-sized nodules (Table 1). Red-crowned crane B showed obvious swelling of its left knee joint. After antibiotic treatment, although it showed an improved appetite and a decrease in symptoms, the crane died unexpectedly ten days later (Table 1). The dead cranes were not immunized with the MDV vaccine. Although there had been no previous reports of MDV-infected cranes, the cranes were fed in mesh cages that were accessible to wild birds.
Table 1.
Date | Clinical Observation | Intervention | Samples Collected |
---|---|---|---|
Aug 19-20 | Red-crowned crane Aa: emaciation, reduced appetite. Diagnostic check: Heart rate: 106 bp/min Body temperature: 39.7°C Weight: 1.6kg; Crane Aa: astasia. |
Rocephin (100 mg/kg) + Dexamethasone (0.25 mg/kg) + 0.9% NaCl 15 ml (intravenous infusion once daily for 3 days) Vitamin C (100 mg/kg) + Vitamin B1(15 mg/kg) + ATP (5 mg/kg) + Inosine (15 mg/kg) + coenzyme A (15 IU/kg) + 10% glucose 15 ml (intravenous infusion once daily for 3 days) 10% glucose + mixture of fish and corn, orally, for 3 days Calcium gluconate (25 mg/kg) + 10% glucose 15 ml (intravenous infusion once daily), for 1 day |
Crane Aa: •Histopathological examination of liver, heart, and spleen. Three repeated samples were collected from each tissue. The ratio of MDV-positive tissues: Heart: 67%, liver: 100%, spleen: 67%. •RNA extraction of feather, liver, spleen, kidney and muscle. Three of each. Positive ratio of all samples was 100%. •Genome extraction of muscle, feather, feather-pulp and spleen; three of each. The positive ratio of all samples was 100%. Crane Bb: same as crane A. |
Aug 21 | Diagnostic check: Heart rate: 156 bp/min Body temperature: 39.8°C Crane Aa died. |
||
Aug 22 | Clinical necropsy: Nodules found in skin, muscle, liver, heart, trachea, and gizzard. (MD suspected). |
||
Sept 11 | Crane Bb: obvious swelling of its left knee joint. |
Musk analgesic aerosol, external use | |
Sept 12-17 | Clinical improvement: Recovered appetite, left knee joint swelled | Musk analgesic aerosol + ichthammol ointment, external use Calcium tablets (10 mg/kg) + Vitamin D2(500 IU/kg) + Vitamin A (1500 IU/kg), orally |
|
Sept 18-19 | Relapse, anorexia, depression | ||
Sept 20 | Crane Bb died. Clinical necropsy: Inflammatory exudates; diffuse yellow-white nodules in muscle, liver, spleen, kidney, pancreas, gizzard, and heart. |
aCrane A: hatched on June 10, died on Aug 22, 2015. Body weight: 1.6 kg
bCrane B: hatched on June 9, died on Sep 22. Body weight: 2.4 kg
Clinical necropsy revealed diffuse yellow-white nodules from millet to soybean size in the skin, muscle, trachea, liver, gizzard, and heart in both cranes (Fig. 1a-f). Diffused yellow-white nodules were also observed in the vertical section of the liver (Fig. 1g). Several hemorrhage sites were observed in the gizzard mucosa (Fig. 1h). A large amount of inflammatory exudates oozed from a surface cut of the swollen joint (Fig. 1i). No other significant gross lesions were observed.
Representative tissue samples were collected during necropsy from the liver, spleen, kidney, muscle, heart, feather follicles, and skin, and these were used for pathological and virological investigations (Table 1). Two sets of tissue samples were collected for different purposes, and were processed in different ways: one set was used for virology analysis and stored at − 80 °C and the other was used for conventional histopathology analysis and fixed in 10% neutral formalin. Formalin-fixed samples were subsequently dehydrated through graded alcohols before being embedded in paraffin wax. Several 4 μm-thick sections were cut from each sample and stained using hematoxylin and eosin (H&E). The heart histology showed that numerous lymphoid cells had infiltrated between adjacent cardiac muscle fibers. We also found that there were various polymorphic lymphoid cells with mitotic figures (Fig. 2a-b). Similarly, the liver structure was disrupted, and a large number of variably sized lymphoblastic cells was dispersed or exhibited mass distribution in the hepatic lobules (Fig. 2c-d). These findings were consistent with the symptoms of MDV infection. However, bacterial infection cannot be excluded from this case, as swollen joints could be a consequence of bacterial infection. It is possible that the birds were infected with MDV, which is immunosuppressive, but succumbed to other conditions such as bacterial superinfection.
For virological detection, frozen tissue samples of feather, liver, spleen, kidney, and muscle were homogenized using a dispersing homogenizer (IKA Ultra-Turrax, T10, Germany). Total RNA was extracted using TRIzol reagent (Sigma, USA) according to the manufacturer’s protocol. The cDNA was prepared using an iScript™ Reverse Transcription Supermix kit (Bio-Rad, USA). The PCR was carried out with 2× Taq Master Mix (Vazyme, China) with the following conditions: denaturation at 94 °C for 5 min; 28 cycles of denaturation at 94 °C for 30 s, annealing at 55 °C for 30 s, and extension at 72 °C for 30s; final extension at 72 °C for 7 min; and maintenance at 4 °C. To optimize the PCR conditions, primers were modified on the basis of Yamaguchi et al. [24]. The Meq primer used herein amplified the DNA 10 bp longer than published primer, due to the forward primer being located 10 bp upstream from the published forward primer. For example, the sequence of the published primer is 5’-GGTCGACTTCGAGACGGAAA-3′, while here, we used 5’-CTTTCTCTCGGGTCGACTTC-3′. The underlined parts are the overlapped sequence. Our gB primers can amplify shorter sequences, but still within the same region compared with the published one. The amplified fragments were resolved by electrophoresis in 1.5% agarose gels (Sigma, USA). Here, RT-PCR was used to determine the viral gene expression. Meq mRNA was examined to measure general mRNA expression regardless of the phase of infection, and gB mRNA was examined to indicate virus lytic replication. Samples were analyzed for the presence of MDV and the reactions were positive for all sampled tissues when amplified with both Meq (Fig. 3a) and gB (Fig. 3b) primers [24] in both crane A (Fig. 3a, b) and crane B (Fig. 3c, d).
To further characterize the virus, samples from spleen, skin, muscle, feather and feather pulp were cut and digested overnight at 55 °C in lysis buffer (10 mM Tris, 100 mM EDTA, 0.5% SDS, and 0.2 mg/ml Proteinase K), and total cellular DNA was extracted with phenol-chloroform-isoamylalcohol (25:24:1), then precipitated with ethanol, and dissolved in TE buffer (10 mM Tris-HCl 1 mM EDTA pH 8.0). Total cellular DNA samples were used as templates for amplifying viral genes. The PCR was carried out with LA Taq DNA polymerase (Takara, Japan). Primers were designed to target the entire-length of the Meq and VP22 genes of Md5 (Table 2). The Meq gene was successfully amplified from the spleen tissue (Fig. 4a). The sequence alignment revealed that the analyzed fragment presented 100% sequence identity with reference MDV strains such as Md5 and Md11 (Fig. 4b and c). It also shared a high homology (97.9%) to the very virulent strain LMS from China (Fig. 4b). An additional PCR was carried out to amplify the VP22 gene, which is a major structural component of the virion [25] (Fig. 5a). The obtained band was sequenced and aligned using DNAMAN software. The sequence alignment showed that the VP22 protein shared the highest identity with the vaccine strain CVI988 as compared to other strains (Fig. 5b). Two substitutions at residues 152 (A → P), 155 (S → C) were found in CVI988, while 2–3 substitutions were found when aligned with other eight isolates. The same as CVI988, six amino acids (TKSERT) were deleted from residues 201 to 206 compared with other isolates (Fig. 5b). The deleted site was located in the domain (SKSERTTKSERT), which contained two copies of motif (KSERT) in virulent MDV strains. It has been shown that regardless of the deletion, the VP22 of the CVI988/Rispens vaccine strain still maintains an intercellular-trafficking function [26].
Table 2.
Name | Sequence | Length |
---|---|---|
Meq-RT-F | CTTTCTCTCGGGTCGACTTC | 347 bp |
Meq-RT-R | GTAAGCAGTCCAAGGGTCAC | |
gB-RT-F | CTTCACAGTTGGGTGGGAC | 338 bp |
gB-RT-R | GAGCCAGGGATTTGGATAG | |
MDV-Meq-F | AGAGATGTCTCAGGAGCCAGAGCC | 1020 bp |
MDV-Meq-R | ATCATCAGGGTCTCCCGTCACCTG | |
MDV-VP22-F | ATCGGATCCATGGGGGATTCTGAAAG | 750 bp |
MDV-VP22-R | ACACTCGAGTTATTCGCTATCACTGC |
Phylogenetic analysis of the Meq gene showed that our MDV clustered with very virulent strain and was most closely related to Md5, Md11 and W (Fig. 6a). However, phylogenetic analysis of the VP22 gene showed that our MDV was closely related with attenuated virulent strain CVI988 (Fig. 6b).
The Meq gene is only present in MDV1m and its gene product, MEQ, which is an MDV1-specific 339 amino acids protein with an N-terminal basic leucine zipper (bZIP) [27, 28]. L-Meq is a longer isoform of Meq that contains a 180 bp nucleotide insertion in the transactivation domain of Meq and is normally detected in non-oncogenic MDV1 vaccine strains such as CVI988 [29]. Interestingly, L-Meq was also amplified from crane spleen cDNA (Fig. 7a). Sequence alignment indicated that it shared 100% identity with the BC-1 strain (Fig. 7b). One substitution was found in the American strains GA and JM10 (Fig. 7c), and four substitutions were found in the JM102 strain (Fig. 7c).
Discussion and conclusions
This article describes the first reported case of MD in red-crowned cranes and confirms that red-crowned cranes are susceptible to MDV infection. Previous research has suggested that multiple avian species can be infected by MDV such as Galliformes (turkeys [8], quails [9] and pheasants [10]), Strigiformes (owls), Anseriformes (ducks, geese, swans), and Falconiformes (kestrels). Therefore, this is also the first molecular detection of Marek’s disease virus in the order Gruiformes. One possible sources of infection for red-crowned cranes might be from migrating wild birds. Murata et al. tested feather-tip samples of wild geese from Japan and the Far East region of Russia by nested PCR, and 30% of analyzed white-fronted geese contained MDV [30], which suggested that migratory birds such as white-fronted geese could be MDV carriers during their migration. Previous research showed that MDV can be transmitted horizontally and across-species. Kenzy and Cho reported that a MDV-positive quail can transmit MD to monitor chicks by contact exposure [31]. Additionally, MDV is fairly resistant to environmental factors. Indeed, MDV can survive at least a few months in the dust at room temperature [32]. The infection source is also diverse, including chicken feather follicle, scurf, house dust, feces, and saliva. Many chickens with a normal appearance can be MDV carriers and spread infection. All of these provide a conducive environment for the spreading of MDV. Considering that the red-crowned cranes were fed in mesh cages that were accessible to wild birds and were never immunized with MDV vaccine before, it is possible that the MDV infection originated from migratory birds.
This case report describes the first detection and characterization of MDV from red-crowned cranes in a Chinese zoo. The molecular analysis of MDV genes suggested that the MDV (from crane) belongs to MDV serotype 1. The red-crowned cranes described in this study showed clinical signs of disease including decreased feed consumption, depression, paralysis, joint swelling, and eventual death. The results of necropsies of dead cranes revealed diffuse nodules in skin, muscle, liver, gizzard and heart. Histological investigation demonstrated lymphomatous infiltration into the affected tissue and neoplastic changes with evidence of mitosis. Additionally, a range of leukocytes was observed, including small/large lymphocytes, lymphoblasts, and occasional plasma cells. The demonstration of polymorphic leukocytes along with molecular detection is highly suggestive of Marek’s disease. RT-PCR targeting oncogenic gene Meq and glycoprotein B (gB) was performed to confirm the presence of MDV, with observation of expected amplification products throughout all tissue samples. Further phylogenetic analysis of the Meq and VP22 genes suggested that our MDV could belong to MDV-1, but it is a novel MDV that contains both Meq and L-Meq gene in its genome.
The detection of MDV in red-crowned cranes suggests that the virus may have a huge impact on the endangered crane’s survival in the wild. However, because this is the first verified instance of crane mortality resulting from MD, its true impact on the population is unknown. A possible solution for management of this species is to vaccinate all the red-crowed cranes to provide immunity against this disease. There are several available MDV vaccines including serotypes MDV-2 (SB-1), HVT, and attenuated MDV-1 (CVI988/Rispens), which are used singly or jointly [33]. MDV vaccination began in the late 1960s and made great contributions to protecting the poultry industry for more than 50 years. However, the current problem involves attenuated MDV vaccine that cannot provide effective protection against new virulent MDV strains. For example, previous reports have shown that molecular evolution of MDV genes could increase the pathogenicity of MDV virulent strains [34]. Infection of very virulent MDV (vvMDV) could also break post-vaccinal protection and cause the outbreak of MDV [35]. Therefore, the safety of this measurement needs to be studied in depth.
Acknowledgements
We thank Dr. Yingjun Lv for review of histological slides and constructive input for data analysis strategies.
Funding
This work was financially supported by the National Natural Science Foundation of China (Grant No. 31472218), the Natural Science Foundation of Jiangsu Province (Grant No. BK20140711), the Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD), SRF for ROCS, SEM([2014]1685), and the Fundamental Research Funds for the Central Universities (Y0201300526; Y0201300527). The funders did not play any role in the design, conclusions or interpretation of the study.
Availability of data and materials
The datasets analysed during the current study are available in the TreeBASE repository. Our data are posted as NEXUS files in the following public domain resources: http://purl.org/phylo/treebase/phylows/study/TB2:S22355. The viral protein sequences of different MDV strains were deposited in GenBank under the accession number in Tables 3, 4 and 5.
Table 3.
Isolate | Country of Origin | Accession Number | Pathotype |
---|---|---|---|
Md5 | USA | AAG14255.1 | vvMDV |
Md11 | USA | AAS01627.1 | vvMDV |
GA | USA | AAF66798.1 | vMDV |
RB1B | USA | AY243332 | vvMDV |
RL | USA | AAR13332.1 | vv + MDV |
TK | USA | AAR13333.1 | vv + MDV |
N | USA | AAR13330.1 | vv + MDV |
New | USA | AAR13331.1 | vv + MDV |
U | USA | AAR13334.1 | vv + MDV |
W | USA | AAR13335.1 | vv + MDV |
X | USA | AAR13336.1 | vv + MDV |
571 | USA | AAR13322.1 | vMDV |
573 | USA | AAR13323.1 | vMDV |
595 | USA | AAR13327.1 | vvMDV |
617A | USA | AAR13324.1 | vMDV |
637 | USA | AAR13325.1 | vMDV |
643P | USA | AAR13328.1 | vvMDV |
660-A | USA | AAR13338.1 | vv + MDV |
648A | USA | AAR13337.1 | vv + MDV |
686 | USA | AAR13339.1 | vv + MDV |
CVI988/Rispens | Netherlands | AAP06940.1 | attMDV |
814 | China | AAL99997.1 | attMDV |
J-1 | China | AEA06596.1 | N.A. |
LQQHR | China | AEM63533.1 | N.A. |
LSY2 | China | AEM63534.1 | N.A. |
LMS | China | AEZ51745.1 | vvMDV |
GX0101 | China | AFX97850.1 | vvMDV |
GX070060 | China | ACA13267.1 | vvMDV |
GX070079 | China | ACA13268.1 | N.A. |
BY | China/Tibet | AEA06593.1 | N.A. |
GXY2 | China | ABQ23868.1 | N.A. |
LDH | China | AEM63523.1 | N.A. |
LYC | China | AEM63536.1 | N.A. |
YLO40920 | China | ABA54944.1 | N.A. |
G2 | China | AAM00003.1 | vvMDV |
Abbreviation: Att attenuated, N.A not available, v virulent, vv very virulent, vv + very virulent plus
Table 4.
Isolate | Country of Origin | Accession Number | Pathotype |
---|---|---|---|
CVI988/Rispens | Netherlands | ABF72204.1 | attMDV |
814 | China | ADA83412.1 | attMDV |
GX060167 | China | ACD75766.1 | N.A. |
HNGS201 | China | CCO02736.1 | N.A. |
MDCC-MSB1 | Japan | BAC57989.1 | N.A. |
MDCC-RP1 | Japan | BAC57991.1 | N.A. |
BC-1 | USA | AAR13319.1 | vMDV |
GA | USA | AAC54628.1 | vMDV |
JM10 | USA | AAP06937.1 | vMDV |
JM/102 W | USA | ABG22905.1 | vMDV |
RM-1 | USA | ABG22996.1 | attMDV |
CU-2 | USA | ACF94907.1 | mMDV |
3004 | Russia | ABS84657.1 | attMDV |
Abbreviation: att attenuated; m mild, N.A not available, v virulent, vv very virulent, vv + very virulent plus
Table 5.
Isolate | Country of Origin | Accession Number | Pathotype |
---|---|---|---|
Md5 | USA | YP-001033978.1 | vvMDV |
CVI988/Rispens | Netherlands | ABF72291.1 | attMDV |
GA | USA | AAF66784.1 | vMDV |
RB1B | USA | ABR13137.1 | vvMDV |
Md11 | USA | AAS01692.1 | vvMDV |
648A | USA | AFM7426.1 | vv + MDV |
549A | USA | ABV31181.1 | vvMDV |
571 | USA | ABV31182.1 | vMDV |
584A | USA | ABV31183.1 | vv + MDV |
595 | USA | ABV31184.1 | vvMDV |
686 | USA | ABV31179.1 | vv + MDV |
JW/102 W | USA | ABV31188.1 | vMDV |
CU-2 | USA | ABV31189.1 | mMDV |
R2/23 | USA | ABV31191.1 | N.A. |
RM-1 | USA | ABV31180.2 | N.A. |
CC/1409 | China | AQN78018.1 | N.A. |
HS/1412 | China | AQN78190.1 | N.A. |
J-1 | China | AQN77146.1 | N.A. |
814 | China | AEV55030.1 | attMDV |
GX0101 | China | AFX97970.1 | vvMDV |
LMS | China | AEZ51712.1 | vvMDV |
JL/1404 | China | AQN77845.1 | N.A. |
LCC | China | AQN77320.1 | N.A. |
LCY | China | ARE59101.1 | N.A. |
LTS | China | AQN77496.1 | N.A. |
Abbreviation: att attenuated, N.A not available, v virulent, vv very virulent, vv + very virulent plus
Abbreviations
- gB
Glycoprotein B
- MDV
Marek’s disease virus
- PCR
Polymerase chain reaction
Authors’ contributions
XL, XM, YSJ, and YJQ designed the research. XL, WC and XM performed laboratory experiments. XL, XM, JX, WC, XZ, HC, CD, YSJ, and YJQ analyzed the data. WC initiated the study and organized samples. XL, XM, YSJ, and YJQ wrote the paper. All authors read and approved the final manuscript.
Ethics approval and consent to participate
This study was approved by the author’s institution (Nanjing Agricultural University ethics committee) and owner consent was obtained for the animals used for the post-mortem examinations.
Consent for publication
Consent was obtained from the owner of the animal for publication of this case report.
Competing interests
The authors declare that they have no competing interests.
Publisher’s Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Contributor Information
Yong-Sam Jung, Email: ysjung@njau.edu.cn.
Yingjuan Qian, Email: yqian@njau.edu.cn.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Data Availability Statement
The datasets analysed during the current study are available in the TreeBASE repository. Our data are posted as NEXUS files in the following public domain resources: http://purl.org/phylo/treebase/phylows/study/TB2:S22355. The viral protein sequences of different MDV strains were deposited in GenBank under the accession number in Tables 3, 4 and 5.
Table 3.
Isolate | Country of Origin | Accession Number | Pathotype |
---|---|---|---|
Md5 | USA | AAG14255.1 | vvMDV |
Md11 | USA | AAS01627.1 | vvMDV |
GA | USA | AAF66798.1 | vMDV |
RB1B | USA | AY243332 | vvMDV |
RL | USA | AAR13332.1 | vv + MDV |
TK | USA | AAR13333.1 | vv + MDV |
N | USA | AAR13330.1 | vv + MDV |
New | USA | AAR13331.1 | vv + MDV |
U | USA | AAR13334.1 | vv + MDV |
W | USA | AAR13335.1 | vv + MDV |
X | USA | AAR13336.1 | vv + MDV |
571 | USA | AAR13322.1 | vMDV |
573 | USA | AAR13323.1 | vMDV |
595 | USA | AAR13327.1 | vvMDV |
617A | USA | AAR13324.1 | vMDV |
637 | USA | AAR13325.1 | vMDV |
643P | USA | AAR13328.1 | vvMDV |
660-A | USA | AAR13338.1 | vv + MDV |
648A | USA | AAR13337.1 | vv + MDV |
686 | USA | AAR13339.1 | vv + MDV |
CVI988/Rispens | Netherlands | AAP06940.1 | attMDV |
814 | China | AAL99997.1 | attMDV |
J-1 | China | AEA06596.1 | N.A. |
LQQHR | China | AEM63533.1 | N.A. |
LSY2 | China | AEM63534.1 | N.A. |
LMS | China | AEZ51745.1 | vvMDV |
GX0101 | China | AFX97850.1 | vvMDV |
GX070060 | China | ACA13267.1 | vvMDV |
GX070079 | China | ACA13268.1 | N.A. |
BY | China/Tibet | AEA06593.1 | N.A. |
GXY2 | China | ABQ23868.1 | N.A. |
LDH | China | AEM63523.1 | N.A. |
LYC | China | AEM63536.1 | N.A. |
YLO40920 | China | ABA54944.1 | N.A. |
G2 | China | AAM00003.1 | vvMDV |
Abbreviation: Att attenuated, N.A not available, v virulent, vv very virulent, vv + very virulent plus
Table 4.
Isolate | Country of Origin | Accession Number | Pathotype |
---|---|---|---|
CVI988/Rispens | Netherlands | ABF72204.1 | attMDV |
814 | China | ADA83412.1 | attMDV |
GX060167 | China | ACD75766.1 | N.A. |
HNGS201 | China | CCO02736.1 | N.A. |
MDCC-MSB1 | Japan | BAC57989.1 | N.A. |
MDCC-RP1 | Japan | BAC57991.1 | N.A. |
BC-1 | USA | AAR13319.1 | vMDV |
GA | USA | AAC54628.1 | vMDV |
JM10 | USA | AAP06937.1 | vMDV |
JM/102 W | USA | ABG22905.1 | vMDV |
RM-1 | USA | ABG22996.1 | attMDV |
CU-2 | USA | ACF94907.1 | mMDV |
3004 | Russia | ABS84657.1 | attMDV |
Abbreviation: att attenuated; m mild, N.A not available, v virulent, vv very virulent, vv + very virulent plus
Table 5.
Isolate | Country of Origin | Accession Number | Pathotype |
---|---|---|---|
Md5 | USA | YP-001033978.1 | vvMDV |
CVI988/Rispens | Netherlands | ABF72291.1 | attMDV |
GA | USA | AAF66784.1 | vMDV |
RB1B | USA | ABR13137.1 | vvMDV |
Md11 | USA | AAS01692.1 | vvMDV |
648A | USA | AFM7426.1 | vv + MDV |
549A | USA | ABV31181.1 | vvMDV |
571 | USA | ABV31182.1 | vMDV |
584A | USA | ABV31183.1 | vv + MDV |
595 | USA | ABV31184.1 | vvMDV |
686 | USA | ABV31179.1 | vv + MDV |
JW/102 W | USA | ABV31188.1 | vMDV |
CU-2 | USA | ABV31189.1 | mMDV |
R2/23 | USA | ABV31191.1 | N.A. |
RM-1 | USA | ABV31180.2 | N.A. |
CC/1409 | China | AQN78018.1 | N.A. |
HS/1412 | China | AQN78190.1 | N.A. |
J-1 | China | AQN77146.1 | N.A. |
814 | China | AEV55030.1 | attMDV |
GX0101 | China | AFX97970.1 | vvMDV |
LMS | China | AEZ51712.1 | vvMDV |
JL/1404 | China | AQN77845.1 | N.A. |
LCC | China | AQN77320.1 | N.A. |
LCY | China | ARE59101.1 | N.A. |
LTS | China | AQN77496.1 | N.A. |
Abbreviation: att attenuated, N.A not available, v virulent, vv very virulent, vv + very virulent plus