Abstract
Clostridium difficile is the most frequent cause of nosocomial antibiotic-associated diarrhea. The incidence of C. difficile infection (CDI) has been rising worldwide with subsequent increases in morbidity, mortality, and health care costs. Asymptomatic colonization with C. difficile is common and a high prevalence has been found in specific cohorts, e.g., hospitalized patients, adults in nursing homes and in infants. However, the risk of infection with C. difficile differs significantly between these cohorts. While CDI is a clear indication for therapy, colonization with C. difficile is not believed to be a direct precursor for CDI and therefore does not require treatment. Antibiotic therapy causes alterations of the intestinal microbial composition, enabling C. difficile colonization and consecutive toxin production leading to disruption of the colonic epithelial cells. Clinical symptoms of CDI range from mild diarrhea to potentially life-threatening conditions like pseudomembranous colitis or toxic megacolon. While antibiotics are still the treatment of choice for CDI, new therapies have emerged in recent years such as antibodies against C. difficile toxin B and fecal microbial transfer (FMT). This specific therapy for CDI underscores the role of the indigenous bacterial composition in the prevention of the disease in healthy individuals and its role in the pathogenesis after alteration by antibiotic treatment. In addition to the pathogenesis of CDI, this review focuses on the colonization of C. difficile in the human gut and factors promoting CDI.
Keywords: Clostridium difficile, microbiota, Clostridium difficile infection, CDI, asymptomatic colonization
Introduction
Clostridium difficile was first described as part of the intestinal bacterial composition in newborns in 1935 (Hall and O′Toole, 1935). In the 1970s, C. difficile was identified as the causative agent for pseudomembranous colitis following antibiotic therapy. The pathogenic potential of this strain was proven to fulfill the Koch’s postulates (Bartlett et al., 1977) underscoring its role in the development of CDI. Recently, a dramatic increase in the incidence as well as in the mortality of CDI could be observed worldwide (Ananthakrishnan, 2011; Lo Vecchio and Zacur, 2012; Tattevin et al., 2013).
The clinical spectrum of C. difficile ranges from asymptomatic colonization, mild and self-limiting disease to a severe, life-threatening pseudomembranous colitis, toxic megacolon, sepsis and death (Gerding et al., 1995; Rupnik et al., 2009). CDI is defined when there is the presence of symptomatic diarrhea defined by three or more unformed stools per 24 h and at least one of the following criteria: a positive laboratory assay for C. difficile toxin A and/or B or toxin-producing C. difficile organism in a stool sample or pseudomembranous colitis or colonic histopathology characteristics of CDI revealed by endoscopy (Kuijper et al., 2006; Cohen et al., 2010). CDI is associated with an increased abundance of toxin-producing C. difficile strains, leading to high toxin concentrations within the colon resulting in inflammation and damage of the colonocytes (Ishida et al., 2004; Meyer et al., 2007; Carroll and Bartlett, 2011). Usually, the indigenous microbial communities provide a colonization resistance to C. difficile, which could also be proven in animal models (Wilson et al., 1981). However, a disruption of this microbial system can promote the development of CDI (Rea et al., 2012; Buffie et al., 2015).
While the clinical presentation of CDI is distinctive, C. difficile colonization without any symptoms, defined as asymptomatic colonization is common, especially in neonates (Ozaki et al., 2004; Jangi and Lamont, 2010). This review focuses on the role of C. difficile in asymptomatic colonization and CDI to better understand which factors might contribute to the progression and also prevention of the disease.
Microbiology
C. difficile is a Gram-positive, anaerobic, spore-forming and toxin-producing bacillus, belonging to cluster XI the Clostridium genus and can be isolated from water, vegetables, hospital environment, and the intestines of humans and domesticated animals (Weese, 2010).
Different virulence factors are associated with the development of CDI. The most important virulence factor is the release of multiple toxins, namely large glycosylating exotoxins A (TcdA) and B (TcdB). These toxins lead to the characteristic clinical symptoms by binding to C. difficile toxin receptors on intestinal epithelial cells (Kelly and LaMont, 1998; Voth and Ballard, 2005; Pruitt and Lacy, 2012; Shen, 2012). Another toxin can be found in some C. difficile strains, especially the PCR ribotype 027, named binary toxin or C. difficile transferase, which is associated with a higher mortality rate in patients (Gerding et al., 2014). This ribotype 027 carries a deletion in tcdC, which is discussed to play a major role in its increased production of toxins (Warny et al., 2005; Curry et al., 2007; Dupuy et al., 2008). There are C. difficile strains which can synthesize C. difficile transferase in the absence of TcdA and TcdB (McFarland et al., 2007a). These toxins, which are encoded on the pathogenicity locus, are multi-domain toxins with glycosyltransferase activities, which transfer glycosyl residues to small Ras homologous GTPases and consecutively lead to a loss of the intestinal membrane integrity and to cell death (Schirmer and Aktories, 2004; Moore et al., 2013). As a consequence, inflammation of the colon occurs with massive fluid loss into the large intestine, clinically presenting as acute diarrhea (Voth and Ballard, 2005). While initially TcdA was suggested to play a more prominent role in the development of CDI compared to TcdB, this view was challenged by different other studies (Lyerly et al., 1985; Komatsu et al., 2003; Drudy et al., 2007; Lyras et al., 2009; Steele et al., 2013). Colonization with C. difficile occurs by oral ingestion of spores from infected individuals or the environment (Jump et al., 2007; Gerding et al., 2008; Sarker and Paredes-Sabja, 2012). While C. difficile is an anaerobic organism, C. difficile spores can survive in aerobic environments for months or years (Rupnik et al., 2009). C. difficile spores are resistant to the gastric acid and can germinate into vegetative cells in the anaerobic conditions of the colon (Gil et al., 2017).
Epidemiology of CDI
The worldwide incidence of CDI has been rising steadily since 2000, however, susceptibility to treatment decreased (McDonald et al., 2006; Vardakas et al., 2012; Bagdasarian et al., 2015). C. difficile was first reported to cause severe antibiotic-associated diarrhea and pseudomembranous colitis in the 1970s and has become the most common healthcare-associated infection, leading to about 500,000 cases and 29,000 deaths annually in the United States (Bartlett et al., 1978; Bartlett, 2006; Lessa et al., 2015). Overall, the epidemiology data of CDI in Europe are more variable due to different reporting systems within the European Union. However, by extrapolation of the data from the United Kingdom to Europe, they result in a total number of 172,000 CDI cases annually within the European Union (Barbut et al., 2013). The epidemic spread of hypervirulent C. difficile strains, e.g., PCR ribotype 027 leads to larger nosocomial outbreaks, which are associated with increased morbidity and mortality (Reichardt et al., 2007; Bacci et al., 2011). The economic impact of CDI is enormous, leading to additional medical costs of over one billion dollar per year in the United States and three billion euro per year within the European Union (Kuijper et al., 2006; Dubberke and Olsen, 2012). Especially hospitalized patients and adults in long-term care facilities are at a higher risk of developing CDI (Simor et al., 2002; Bauer et al., 2011; Kim et al., 2011). Additionally, in infants an increase of CDI was observed in the last decade (Zilberberg et al., 2008; Nylund et al., 2011; Khanna et al., 2013; McFarland et al., 2016). This is especially interesting since – as mentioned above – C. difficile is highly prevalent in infants, however, they usually do not show clinical signs of CDI. Nevertheless, the data regarding CDI in pediatric patients are limited.
Asymptomatic Colonization
While many studies have focused on the pathogenesis and the development of CDI, the role of asymptomatic C. difficile colonization and its progression to CDI is still not completely understood. While in the past literature the definition of asymptomatic C. difficile colonization is not uniform, Furuya-Kanamori et al. (2015) were proposing one as followed: either detectable concentrations of C. difficile or its toxin and the absence of diarrhea without colonoscopic or histopathologic findings consistent with pseudomembranous colitis.
The prevalence of asymptomatic C. difficile colonization in adults varies in different population groups. In healthy adults, several studies have shown that 0–17.5% were colonized by C. difficile strains without clinical signs of CDI (Nakamura et al., 1981; Viscidi et al., 1981; Kobayashi, 1983; Aronsson et al., 1985; Fekety and Shah, 1993; Ozaki et al., 2004; Terveer et al., 2017). The colonization rate of toxigenic strains ranges from 1 to 5% in the surveyed group. While the prevalence of asymptomatic C. difficile colonization is relatively low in healthy adults, it can rise dramatically in individuals having contact with the health system. Elderly in long-term care facilities or nursing homes have an increased rate of colonization range from 0 to 51% (Campbell et al., 1988; Riggs et al., 2007; Arvand et al., 2012). A high prevalence of asymptomatic C. difficile can also be found in patients or health-care workers (McFarland et al., 1989; Samore et al., 1994; Kato et al., 2001; Hell et al., 2012; Guerrero et al., 2013; Leekha et al., 2013). Additionally, patients in rehabilitation centers have an increased rate of asymptomatic C. difficile colonization (Marciniak et al., 2006; Stevens et al., 2011). Furthermore, a high percentage of asymptomatic C. difficile colonization can be found in adult patients with underlying diseases, e.g., cystic fibrosis (Welkon et al., 1985; Peach et al., 1986; Bauer et al., 2014).
Risk factors for the development of the last asymptomatic C. difficile colonization are hospitalization within 12 months, use of corticosteroids, a previous history of CDI and antibodies against toxin B (Kong et al., 2015).
In contrast to adults, a high prevalence of C. difficile colonization without clinical signs of CDI can be observed in infants and neonates (Thompson et al., 1983; Rousseau et al., 2012). Especially in the first 4 weeks of life, C. difficile colonization increases from 0% to an average of 37%, followed by a recovery, dropping to an average of 10% during the first year of life (Bolton et al., 1984; Jangi and Lamont, 2010). Colonization rates comparable to the rates in healthy adults were observed in infants by the age of 2 (Hafiz and Oakley, 1976). Analysis of ribotypes revealed that pediatric patients harbor several toxigenic strains that circulate in adult patients (Schwartz et al., 2014; van Dorp et al., 2017).
Although – according to the definition – asymptomatic colonized individuals show no clinical signs of CDI, they can act as a reservoir of C. difficile and also may serve as potential disease carriers and might therefore transmit C. difficile to others (McFarland et al., 1989; Riggs et al., 2007; Curry et al., 2013; Eyre et al., 2013). Furthermore, asymptomatic colonization with C. difficile is a crucial factor in the progression to CDI, as carriers of toxigenic strains are at a higher risk for the development of an infection compared to non-colonized patients (Zacharioudakis et al., 2015).
In contrast to this, asymptomatic colonization could also induce the production of antibodies, which in turn protect their host against CDI with a humoral immune response (Shim et al., 1998; Kyne et al., 2000, 2001). It was also proposed that asymptomatic C. difficile colonization might lead to the integration of C. difficile into the indigenous intestinal microbiota, serving as a protective factor for the development of CDI (Vincent et al., 2016). This theory could also be proven in hamsters, where colonization with a non-toxigenic C. difficile strain before the application of a toxigenic C. difficile strain was able to prevent the development of CDI (Sambol et al., 2002; Merrigan et al., 2003, 2009). However, further prospective studies to better understand the mechanisms how individuals develop asymptomatic C. difficile colonization and if this may act as risk or protective factor in the progression for an infection are needed.
From Colonization to Infection
A schematic overview which factors lead to the development of CDI is given in Figure 1.
FIGURE 1.
Processes leading from asymptomatic C. difficile colonization to CDI. Different factors can prevent an asymptomatic individual from the development of CDI. Gastric acid production within the stomach prevents further spreading of the spores. A healthy indigenous intestinal microbial composition serves as a colonization resistance, can produce bacteriocins limiting C. difficile expansion and compete with nutritional contents. Additionally, a change in the bile acid composition can also have effects on the expansion of C. difficile. Increased exposure to C. difficile, e.g., contact with HCF or via oral ingestion with food, predisposes an individual at risk for asymptomatic colonization. In case of underlying risk factors, an asymptomatic colonization can progress to CDI. After application of antibiotics, a depletion of the commensal bacterial composition can occur leading to a reduced colonization resistance favoring the development of CDI. Other risk factors are increased age, comorbidities and the application of drugs which reduce the gastric acid, e.g., proton pump inhibitors (PPIs). Abbreviations: CDI, C. difficile infection; HCF, health care facilities; IgA, Immunoglobulin A; PPI, proton pump inhibitor; TcdA, C. difficile toxin A; TcdB, C. difficile toxin B.
Host Factors
The Indigenous Microbiota
The intestinal microbiota is a complex ecosystem consisting of over a thousand bacterial species reaching its highest concentration in the colon (Ley et al., 2006; Sekirov et al., 2010; Blaser, 2014). In adults, a healthy intestinal microbiota is dominated by the phyla Bacteroidetes and Firmicutes and shows a high diversity and richness (Rajilić-Stojanović et al., 2009). These commensal bacteria are essential for the host metabolism, nutrition function, maturation of the immune system and protection against pathogens. During human lifetime, different factors, such as the mode of delivery, diet, geography, antibiotic use and the development of gastrointestinal diseases can influence the composition of the intestinal microbiota (Schultsz et al., 1999; Huurre et al., 2008; De Filippo et al., 2010; Dominguez-Bello et al., 2010; Jakobsson et al., 2010; Manges et al., 2010; Dethlefsen and Relman, 2011; Muegge et al., 2011; Wu et al., 2011; Yatsunenko et al., 2012; Zupancic et al., 2012; Matamoros et al., 2013; Ringel and Maharshak, 2013). A disruption of this ecosystem, a so-called intestinal dysbiosis can have a significant influence on the structure and the function of the resident microbiota. Changes of the indigenous intestinal microbial composition result in a breakdown of the colonization resistance, which favors C. difficile germination, growth and spreading within the intestine (Antonopoulos et al., 2009; Robinson and Young, 2010).
It is well known that the susceptibility of CDI is strongly associated with a previous exposure to antibiotics. The application of antibiotics, especially broad-spectrum antibiotics, can have profound and long-lasting consequences on the host by altering the intestinal bacterial composition and the metabolome (Dethlefsen et al., 2008; Antonopoulos et al., 2009; Peterfreund et al., 2012; Theriot et al., 2014). The first description of CDI in the setting of antibiotic therapy was in 1974 in a patient after the application of clindamycin (Tedesco et al., 1974). Other antibiotics, especially cephalosporins, penicillin and fluoroquinolones have also been reported to be associated with the development of CDI (Bartlett, 2010; Manges et al., 2010). Moreover, it has been demonstrated that cumulative exposure to any kind of antibiotics increases the risk of developing CDI (Stevens et al., 2011). The impact of antibiotic administration on the microbial composition in healthy adults has been studied extensively. Sullivan et al. (2001) summarized the effects of different antimicrobial agents on the bacterial diversity and single bacterial phylae, families and classes. The effects of antibiotics on the intestinal microbial composition can also be investigated in murine models, allowing the examination of factors which lead to the resistance of C. difficile colonization and subsequent development of CDI (Chen et al., 2008; Reeves et al., 2011, 2012; Buffie et al., 2012; Lawley et al., 2012; Winston et al., 2016). Different studies described the intestinal microbial composition in patients with CDI and observed similar results regarding a reduced diversity and also reduced species richness. In contrast to healthy controls, patients with CDI showed an increase in Firmicutes and Proteobacteria phyla and a decrease in Bacteroidetes phylum. Furthermore, Ruminococcacea, Lachnospiraceae, Bacteriodaceae, Clostrida cluster IV and XIVa are decreased while an increased abundance of Enterococacea could be observed (Chang et al., 2008; Antharam et al., 2013; Hamilton et al., 2013). Additionally, in a study by Vincent et al. (2013, 2016), co-colonization with potentially protective bacterial taxa, e.g., Clostridiales Family XI Incertae Sedis, Clostridium or Eubacterium may protect the development of CDI from asymptomatic C. difficile colonization. In a recent study by Pakpour et al. (2017), Veillonella dispar was found as a candidate organism which might be protective for the recurrence of C. difficile.
Bile Acids
Germination of C. difficile spores is supported by changes in the composition of bile acids (Jump et al., 2007; Howerton et al., 2011). A reduced number of bacteria, producing hydrolase enzymes, results in a reduction of secondary bile acids, which normally inhibit vegetative cell growth and a simultaneous increase of primary bile acids like cholate or taurocholic acid stimulates spore germination (Sorg and Sonenshein, 2008). While cholate and glycine can promote C. difficile spore formation, chenodeoxycholate was found to act as an inhibitor of spore formation (Wilson, 1983; Sorg and Sonenshein, 2008). A depletion of commensals can also result in an oversupply of available nutrients, e.g., monosaccharides, which can further be utilized by C. difficile (Wilson and Perini, 1988; Begley et al., 2006). In a murine model, administration of antibiotics led to a shift of the bile acid pool and therefore increased C. difficile spore germination (Giel et al., 2010; Antunes and Finlay, 2011).
Bacteriocins
Bacteriocins are ribosomally synthesized antimicrobial peptides with narrow or broad spectrum activity against other bacterial species (Bacon et al., 1988; Cotter et al., 2005). The secretion of bacteriocins from Bacillus, Lactococcus, and Enterococcus strains, whose antimicrobial function against C. difficile has been proven in vitro, is decreased in CDI (Bartoloni et al., 2004; Rea et al., 2007; Trzasko et al., 2012).
C. Difficile Toxin A Receptor
The susceptibility of the host to CDI is also associated with the presence or absence of C. difficile toxin A receptor on the surface of intestinal epithelial cells. This fact was reinforced by the study of Eglow et al. (1992) which compared the effect of toxin A in newborn compared to adult rabbit ileum. The absence of pathological effects in the newborn ileum may be due to a complete lack or only a low expression of C. difficile toxin A receptor and therefore might prevent neonates from the development a CDI.
Immunological Factors
It is well known that the host recognition of C. difficile and the subsequent innate and adaptive immune responses have a protective effect against the development of CDI (Cowardin and Petri, 2014; Buonomo and Petri, 2016). Kyne et al. (2000) tested prospectively the immune response of the host via measuring IgG antibodies of TcdA and found that an acquired antibody response to C. difficile protected against CDI. However, the antibody response to C. difficile did not affect asymptomatic C. difficile colonization.
The protective effect of high IgA concentrations, which is a potent toxin A neutralizer has also been shown in breastfeed infants (Rolfe and Song, 1995). The presence of maternal secretory IgA may prevent them from colonization, as this cohort was found to have lower recovery rates compared to formula-fed infants (Viscidi et al., 1981; Larson et al., 1982; Stark and Lee, 1982; Richardson et al., 1983; Wongwanich et al., 2001). However, beneath IgA also other components of breast milk have the potential to bind C. difficile toxin A (Rolfe and Song, 1995; Naaber et al., 1996).
Bacterial Factors
The development of CDI is closely linked to the bacterial virulence factors TcdA and TcdB and the binary toxin, as non-toxigenic C. difficile strains are not known to cause CDI (Geric et al., 2006). Colonization with hypervirulent ribotype NAP1 occurred more likely in CDI than in asymptomatic colonized individuals, due to an increased TcdA and TcdB production compared to other toxigenic ribotypes (Warny et al., 2005; Loo et al., 2011; Alasmari et al., 2014).
Extrinsic Risk Factors
Different studies indicate that – beneath host-mediated and pathogen-related factors – multiple extrinsic risk factors increase the development and also severity of CDI.
Antibiotics
As described above, the use of antibiotics is the most-common risk factor in the development of CDI. Antibiotics have dramatic effects on the bacterial ecosystem of the gut, which can last for a long period of time (Dethlefsen et al., 2008; Antonopoulos et al., 2009). Especially fluoroquinolones and particularly cephalosporins and clindamycin are associated with an increased frequency of CDI (Nelson et al., 1994; McCusker et al., 2003; Muto et al., 2005; McFarland et al., 2007b; Kallen et al., 2009).
Proton Pump Inhibitors
Another important risk factor for the development of CDI is the use of proton pump inhibitors (PPIs) (Dial et al., 2004; Akhtar and Shaheen, 2007; Deshpande et al., 2012). While the normal gastric acidity provides a protective host defense, an increase of the gastric pH may prevent the gastric content from an elimination of the ingested C. difficile spores (Bavishi and Dupont, 2011). However, the role of PPIs in the development of CDI is still controversial, since other studies could not prove an association between the gastric acid suppression and an increased risk for the development of CDI (Novack et al., 2014; Khanafer et al., 2017). Since the use of PPIs is increasing globally, further prospective studies are needed in order to address the possible association with these drugs and the development of asymptomatic C. difficile colonization or CDI.
Health Care Facilities
In hospitals or long-term care facilities, an increased exposure to C. difficile can be found due to high C. difficile contamination on surfaces, medical devices and health care personal or infected roommates (McFarland et al., 1989; Chang and Nelson, 2000). Furthermore, a high rate of polypharmacy like antibiotics and underlying co-morbidities such as malignancy or inflammatory bowel disease are closely associated with patients in health care facilities (Morris et al., 1984; Rea et al., 2007). To decrease the C. difficile transmission and infection rate in hospitals and long-term care facilities, a screening of new patients could be an option to identify toxigenic strain carriers and isolate them from other patients. These approach was able to significantly decrease the incidence of hospital acquired CDI in a prospective Canadian study cohort (Longtin et al., 2016).
Age
Clostridium difficile is more common in advanced age, also showing a more severe outcome in this population (Loo et al., 2005; Pépin et al., 2005; Henrich et al., 2009; Miller et al., 2010). There are several possible mechanisms for this phenomenon. First, an inadequate innate or humoral immune response might lead to a higher incidence and also severity of CDI (Kelly, 1996; Mariat et al., 2009; Ogra, 2010). Secondarily, the higher prevalence of CDI in the elderly could also be associated with the change of the intestinal microbial composition, e.g., loss of bacterial diversity during aging, which might promote C. difficile colonization (Hopkins et al., 2001; Woodmansey, 2007). Additionally, the presence of chronic disorders and an increase in the infection rate, requiring polypharmacy, including antibiotics, is generally much higher in this age cohort (Garibaldi and Nurse, 1986; Werner and Kuntsche, 2000; Gao et al., 2018).
C. difficile in Food
While the transmission of C. difficile from humans to humans is well-established, C. difficile as a foodborne disease still remains a matter of debate. In different studies, C. difficile was found in retail meat (Rodriguez-Palacios et al., 2007, 2009). Additionally, C. difficile was also detected in water, vegetables, pets and also piglets (Borriello et al., 1983; al Saif and Brazier, 1996; Keel et al., 2007; Songer et al., 2007; Yaeger et al., 2007; Clooten et al., 2008; Pirs et al., 2008; Bakri et al., 2009). Regular exposure to C. difficile in the food might lead to asymptomatic C. difficile colonization. However, since community-acquired C. difficile is relatively uncommon, it is not clear if the ingestion of C. difficile via the oral route also leads to consecutive CDI. Further studies will be needed in order to address this issue.
Treatment of CDI
Conventional
The mainstay in the treatment of CDI is – beneath the withdrawal of antibiotics fostering CDI – the initiation of an antibiotic therapy, e.g., vancomycin or metronidazole (Debast et al., 2014; Hagel et al., 2015). Recent advances in the therapy of C. difficile and the role of antibiotic resistance in CDI are summarized elsewhere (Spigaglia, 2016). However, therapy of recurrent CDI can be challenging with conventional antibiotic therapy (Cohen et al., 2010; Wilcox et al., 2017). Recurrence of CDI is found in 20–30% of the patients with a high mortality rate in this cohort (Dubberke and Olsen, 2012). Fidaxomicin, approved by the United States Food and Drug Administration for CDI treatment, shows reduced recurrence rates in patients with C. difficile, however, not in the highly virulent strains B1/NAP1/027 (Louie et al., 2011; Cornely et al., 2012). In a recent study, the use of bezlotoxumab, a human monoclonal antibody against TcdB, was associated with a lower rate of C. difficile recurrent infection compared to placebo (Wilcox et al., 2017). The addition of an antibody against TcdA (actoxumab) had no effect on the disease recurrence alone or in combination with bezlotoxumab, which is also underscoring the crucial role of toxin B in the pathogenesis of CDI. A matter of debate for this new approach is the potential combination with fecal microbial transplantation (FMT). Further studies will be needed in order to redefine the treatment algorithm of CDI with bezlotoxumab.
Microbiota-Targeted Therapy
The intestinal microbial communities of patients with CDI differ from patients with asymptomatic C. difficile colonization (Rousseau et al., 2012). In different studies, the administration of single strain probiotics showed only limited success in the treatment of CDI (Pochapin, 2000; Wullt et al., 2003). The role of probiotics in the prevention of CDI is still discussed controversial (Shen et al., 2017; Vernaya et al., 2017). In contrast to this, the probiotic treatment with three strains from Lactobacillus parallel to antibiotic application in hospitalized adults showed a significantly decreased CDI rate from 18.0 to 2.3 cases per 10,000 patients-days during the 10-year observation period (Maziade et al., 2015). The most direct and effective way in changing the patient’s intestinal bacterial composition is via FMT. FMT is highly effective in the treatment of antibiotic-refractory CDI and recently was also shown to be cost effective (Kassam et al., 2013; van Nood et al., 2013; Arbel et al., 2017). FMT involves installation of stool from a healthy donor into a patient, leading to a shift of the intestinal microbial communities. Despite the high effectiveness of FMT in the treatment of recurrent CDI, the long-term effects of this therapeutic approach are still not known and might lead to an increased risk of other diseases. Furthermore, FMT is still a highly diverse biological product with several challenges in the standardization of protocols (Arbel et al., 2017). Another therapeutic approach is the administration of non-toxigenic C. difficile strains or a mixture of spore-forming commensals. In two phase II clinical trials testing both treatments, a significant decrease of CDI recurrence was observed (Gerding et al., 2015; Khanna et al., 2016). However, in another study it was observed that non-toxigenic strains had the capacity to change their phenotype to toxigenic C. difficile strains (Brouwer et al., 2013). Therefore, non-toxigenic strains can also be a predisposition in the development of CDI and have to be used with caution in the setting of C. difficile prevention.
Conclusion
The incidence of CDI increased dramatically in the last years. While asymptomatic C. difficile colonization is common especially in newborns, the progression from asymptomatic colonization to infection is not completely understood and large, prospective studies are lacking. While many studies in adults and infants showed high C. difficile colonization rates with toxigenic as well as non-toxigenic strains, the detection of C. difficile or its toxins in feces of individuals does not immediately implicate an infection with this pathogen and therefore treatment is only indicated when there are clinical signs of CDI. Although persons with asymptomatic C. difficile colonization are potential disease carriers and therefore predispose a risk factor for themselves and other people, based on current information an eradication of C. difficile is not indicated. CDI is strongly associated with host-mediated factors, including the indigenous microbiota, bacteriocins, toxin A receptor and immunological factors as well as pathogen-related factors, including TcdA, TcdB, and binary toxin. However, host-mediated factors are discussed to have a more pronounced role in the development of CDI (McFarland et al., 1991; Cheng et al., 1997). Especially a disruption of the indigenous intestinal microbial composition within the host can promote the development of CDI via germination and proliferation of toxigenic C. difficile strains. Furthermore, several external factors like age, polypharmacy or underlying medical conditions increase the risk and severity of CDI. Due to the strong association between CDI and antibiotic exposure, therapeutic approaches that target the modulation of the intestinal bacterial composition like FMT are crucial in this clinical setting. Treatment strategies with non-toxigenic C. difficile strains are on their way, however, a change of non-toxigenic to toxigenic C. difficile strains can occur, making this therapeutic approach challenging.
The role of asymptomatic C. difficile colonization in the development of CDI is still a controversial matter of debate. Further studies elucidating the clinical consequences of asymptomatic C. difficile colonization are needed to further investigate if the presence of C. difficile without any signs of CDI is beneficial or might potentially be harmful. We conclude that mechanisms that enable the progression from asymptomatic C. difficile colonization to CDI are closely associated with host-mediated as well as pathogen-related factors and a combination of both might be of outstanding interest in the pathogenesis and also prevention of CDI.
Author’s Note
Due to a limitation of words no citation of all primary literature was possible, the authors kindly ask to excuse this circumstance.
Author Contributions
All authors listed have made a substantial, direct and intellectual contribution to the work, and approved it for publication.
Conflict of Interest Statement
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Acknowledgments
AB thanks the Federal State Government of Mecklenburg-Vorpommern, Ministry of Education, Science and Culture, Grant No. AU 15 002.
Abbreviations
- C. difficile
Clostridium difficile
- CDI
C. difficile infection
- FMT
fecal microbiota transfer
- Ig
immunoglobulin
- TcdA
C. difficile toxin A
- TcdB
C. difficle toxin B.
Footnotes
Funding. HS received a research grant from the Damp Foundation (2016-04).
References
- Akhtar A. J., Shaheen M. (2007). Increasing incidence of Clostridium difficile-associated diarrhea in African-American and Hispanic patients: association with the use of proton pump inhibitor therapy. J. Natl. Med. Assoc. 99 500–504. [PMC free article] [PubMed] [Google Scholar]
- al Saif N., Brazier J. S. (1996). The distribution of Clostridium difficile in the environment of South Wales. J. Med. Microbiol. 45 133–137. 10.1099/00222615-45-2-133 [DOI] [PubMed] [Google Scholar]
- Alasmari F., Seiler S. M., Hink T., Burnham C.-A. D., Dubberke E. R. (2014). Prevalence and risk factors for asymptomatic Clostridium difficile carriage. Clin. Infect. Dis. 59 216–222. 10.1093/cid/ciu258 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ananthakrishnan A. N. (2011). Clostridium difficile infection: epidemiology, risk factors and management. Nat. Rev. Gastroenterol. Hepatol. 8 17–26. 10.1038/nrgastro.2010.190 [DOI] [PubMed] [Google Scholar]
- Antharam V. C., Li E. C., Ishmael A., Sharma A., Mai V., Rand K. H., et al. (2013). Intestinal dysbiosis and depletion of butyrogenic bacteria in Clostridium difficile infection and nosocomial diarrhea. J. Clin. Microbiol. 51 2884–2892. 10.1128/JCM.00845-13 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Antonopoulos D. A., Huse S. M., Morrison H. G., Schmidt T. M., Sogin M. L., Young V. B. (2009). Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation. Infect. Immun. 77 2367–2375. 10.1128/IAI.01520-08 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Antunes L. C. M., Finlay B. B. (2011). A comparative analysis of the effect of antibiotic treatment and enteric infection on intestinal homeostasis. Gut Microbes 2 105–108. 10.4161/gmic.2.2.15610 [DOI] [PubMed] [Google Scholar]
- Arbel L. T., Hsu E., McNally K. (2017). Cost-effectiveness of fecal microbiota transplantation in the treatment of recurrent Clostridium difficile infection: a literature review. Cureus 9:e1599. 10.7759/cureus.1599 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Aronsson B., Möllby R., Nord C. E. (1985). Antimicrobial agents and Clostridium difficile in acute enteric disease: epidemiological data from Sweden, 1980-1982. J. Infect. Dis. 151 476–481. 10.1093/infdis/151.3.476 [DOI] [PubMed] [Google Scholar]
- Arvand M., Moser V., Schwehn C., Bettge-Weller G., Hensgens M. P., Kuijper E. J. (2012). High prevalence of Clostridium difficile colonization among nursing home residents in Hesse, Germany. PLoS One 7:e30183. 10.1371/journal.pone.0030183 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bacci S., Mølbak K., Kjeldsen M. K., Olsen K. E. P. (2011). Binary toxin and death after Clostridium difficile infection. Emerg. Infect. Dis. 17 976–982. 10.3201/eid/1706.101483 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bacon A. E., Fekety R., Schaberg D. R., Faix R. G. (1988). Epidemiology of Clostridium difficile colonization in newborns: results using a bacteriophage and bacteriocin typing system. J. Infect. Dis. 158 349–354. 10.1093/infdis/158.2.349 [DOI] [PubMed] [Google Scholar]
- Bagdasarian N., Rao K., Malani P. N. (2015). Diagnosis and treatment of Clostridium difficile in adults: a systematic review. JAMA 313 398–408. 10.1001/jama.2014.17103 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bakri M. M., Brown D. J., Butcher J. P., Sutherland A. D. (2009). Clostridium difficile in ready-to-eat salads, Scotland. Emerg. Infect. Dis. 15 817–818. 10.3201/eid1505.081186 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Barbut F., Cornely O. A., Fitzpatrick F., Kuijper E. J., Nagy E., Rupnik M., et al. (2013). Clostridium difficile Infection in Europe: A CDI Europe Report. Available at: http://www.multivu.com/assets/60637/documents/60637-CDI-HCP-Report-original.pdf [accessed March 05 2018]. [Google Scholar]
- Bartlett J. G. (2006). Narrative review: the new epidemic of Clostridium difficile-associated enteric disease. Ann. Intern. Med. 145 758–764. 10.7326/0003-4819-145-10-200611210-00008 [DOI] [PubMed] [Google Scholar]
- Bartlett J. G. (2010). Clostridium difficile: progress and challenges. Ann. N. Y. Acad. Sci. 1213 62–69. 10.1111/j.1749-6632.2010.05863.x [DOI] [PubMed] [Google Scholar]
- Bartlett J. G., Chang T. W., Onderdonk A. B. (1978). Comparison of five regimens for treatment of experimental clindamycin-associated colitis. J. Infect. Dis. 138 81–86. 10.1093/infdis/138.1.81 [DOI] [PubMed] [Google Scholar]
- Bartlett J. G., Onderdonk A. B., Cisneros R. L., Kasper D. L. (1977). Clindamycin-associated colitis due to a toxin-producing species of Clostridium in hamsters. J. Infect. Dis. 136 701–705. 10.1093/infdis/136.5.701 [DOI] [PubMed] [Google Scholar]
- Bartoloni A., Mantella A., Goldstein B. P., Dei R., Benedetti M., Sbaragli S., et al. (2004). In-vitro activity of nisin against clinical isolates of Clostridium difficile. J. Chemother. 16 119–121. 10.1179/joc.2004.16.2.119 [DOI] [PubMed] [Google Scholar]
- Bauer M. P., Farid A., Bakker M., Hoek R. A. S., Kuijper E. J., van Dissel J. T. (2014). Patients with cystic fibrosis have a high carriage rate of non-toxigenic Clostridium difficile. Clin. Microbiol. Infect. 20 O446–O449. 10.1111/1469-0691.12439 [DOI] [PubMed] [Google Scholar]
- Bauer M. P., Notermans D. W., van Benthem B. H. B., Brazier J. S., Wilcox M. H., Rupnik M., et al. (2011). Clostridium difficile infection in Europe: a hospital-based survey. Lancet 377 63–73. 10.1016/S0140-6736(10)61266-4 [DOI] [PubMed] [Google Scholar]
- Bavishi C., Dupont H. L. (2011). Systematic review: the use of proton pump inhibitors and increased susceptibility to enteric infection. Aliment. Pharmacol. Ther. 34 1269–1281. 10.1111/j.1365-2036.2011.04874.x [DOI] [PubMed] [Google Scholar]
- Begley M., Hill C., Gahan C. G. M. (2006). Bile salt hydrolase activity in probiotics. Appl. Environ. Microbiol. 72 1729–1738. 10.1128/AEM.72.3.1729-1738.2006 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Blaser M. J. (2014). The microbiome revolution. J. Clin. Invest. 124 4162–4165. 10.1172/JCI78366 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Bolton R. P., Tait S. K., Dear P. R., Losowsky M. S. (1984). Asymptomatic neonatal colonisation by Clostridium difficile. Arch. Dis. Child. 59 466–472. 10.1136/adc.59.5.466 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Borriello S. P., Honour P., Turner T., Barclay F. (1983). Household pets as a potential reservoir for Clostridium difficile infection. J. Clin. Pathol. 36 84–87. 10.1136/jcp.36.1.84 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Brouwer M. S. M., Roberts A. P., Hussain H., Williams R. J., Allan E., Mullany P. (2013). Horizontal gene transfer converts non-toxigenic Clostridium difficile strains into toxin producers. Nat. Commun. 4:2601. 10.1038/ncomms3601 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Buffie C. G., Bucci V., Stein R. R., McKenney P. T., Ling L., Gobourne A., et al. (2015). Precision microbiome reconstitution restores bile acid mediated resistance to Clostridium difficile. Nature 517 205–208. 10.1038/nature13828 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Buffie C. G., Jarchum I., Equinda M., Lipuma L., Gobourne A., Viale A., et al. (2012). Profound alterations of intestinal microbiota following a single dose of clindamycin results in sustained susceptibility to Clostridium difficile-induced colitis. Infect. Immun. 80 62–73. 10.1128/IAI.05496-11 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Buonomo E. L., Petri W. A. (2016). The microbiota and immune response during Clostridium difficile infection. Anaerobe 41 79–84. 10.1016/j.anaerobe.2016.05.009 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Campbell R. R., Beere D., Wilcock G. K., Brown E. M. (1988). Clostridium difficile in acute and long-stay elderly patients. Age Ageing 17 333–336. 10.1093/ageing/17.5.333 [DOI] [PubMed] [Google Scholar]
- Carroll K. C., Bartlett J. G. (2011). Biology of Clostridium difficile: implications for epidemiology and diagnosis. Annu. Rev. Microbiol. 65 501–521. 10.1146/annurev-micro-090110-102824 [DOI] [PubMed] [Google Scholar]
- Chang J. Y., Antonopoulos D. A., Kalra A., Tonelli A., Khalife W. T., Schmidt T. M., et al. (2008). Decreased diversity of the fecal Microbiome in recurrent Clostridium difficile-associated diarrhea. J. Infect. Dis. 197 435–438. 10.1086/525047 [DOI] [PubMed] [Google Scholar]
- Chang V. T., Nelson K. (2000). The role of physical proximity in nosocomial diarrhea. Clin. Infect. Dis. 31 717–722. 10.1086/314030 [DOI] [PubMed] [Google Scholar]
- Chen X., Katchar K., Goldsmith J. D., Nanthakumar N., Cheknis A., Gerding D. N., et al. (2008). A mouse model of Clostridium difficile-associated disease. Gastroenterology 135 1984–1992. 10.1053/j.gastro.2008.09.002 [DOI] [PubMed] [Google Scholar]
- Cheng S. H., Lu J. J., Young T. G., Perng C. L., Chi W. M. (1997). Clostridium difficile–associated diseases: comparison of symptomatic infection versus carriage on the basis of risk factors, toxin production, and genotyping results. Clin. Infect. Dis. 25 157–158. 10.1086/516891 [DOI] [PubMed] [Google Scholar]
- Clooten J., Kruth S., Arroyo L., Weese J. S. (2008). Prevalence and risk factors for Clostridium difficile colonization in dogs and cats hospitalized in an intensive care unit. Vet. Microbiol. 129 209–214. 10.1016/j.vetmic.2007.11.013 [DOI] [PubMed] [Google Scholar]
- Cohen S. H., Gerding D. N., Johnson S., Kelly C. P., Loo V. G., McDonald L. C., et al. (2010). Clinical practice guidelines for Clostridium difficile infection in adults: 2010 update by the society for healthcare epidemiology of America (SHEA) and the infectious diseases society of America (IDSA). Infect. Control Hosp. Epidemiol. 31 431–455. 10.1086/651706 [DOI] [PubMed] [Google Scholar]
- Cornely O. A., Crook D. W., Esposito R., Poirier A., Somero M. S., Weiss K., et al. (2012). Fidaxomicin versus vancomycin for infection with Clostridium difficile in Europe, Canada, and the USA: a double-blind, non-inferiority, randomised controlled trial. Lancet Infect. Dis. 12 281–289. 10.1016/S1473-3099(11)70374-7 [DOI] [PubMed] [Google Scholar]
- Cotter P. D., Hill C., Ross R. P. (2005). Bacteriocins: developing innate immunity for food. Nat. Rev. Microbiol. 3 777–788. 10.1038/nrmicro1273 [DOI] [PubMed] [Google Scholar]
- Cowardin C. A., Petri W. A. (2014). Host recognition of Clostridium difficile and the innate immune response. Anaerobe 30 205–209. 10.1016/j.anaerobe.2014.08.014 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Curry S. R., Marsh J. W., Muto C. A., O’Leary M. M., Pasculle A. W., Harrison L. H. (2007). tcdC genotypes associated with severe TcdC truncation in an epidemic clone and other strains of Clostridium difficile. J. Clin. Microbiol. 45 215–221. 10.1128/JCM.01599-06 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Curry S. R., Muto C. A., Schlackman J. L., Pasculle A. W., Shutt K. A., Marsh J. W., et al. (2013). Use of multilocus variable number of tandem repeats analysis genotyping to determine the role of asymptomatic carriers in Clostridium difficile transmission. Clin. Infect. Dis. 57 1094–1102. 10.1093/cid/cit475 [DOI] [PMC free article] [PubMed] [Google Scholar]
- De Filippo C., Cavalieri D., Di Paola M., Ramazzotti M., Poullet J. B., Massart S., et al. (2010). Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc. Natl. Acad. Sci. U.S.A. 107 14691–14696. 10.1073/pnas.1005963107 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Debast S. B., Bauer M. P., Kuijper E. J. (2014). European Society of Clinical Microbiology and Infectious Diseases: update of the treatment guidance document for Clostridium difficile infection. Clin. Microbiol. Infect. 20(Suppl. 2), 1–26. 10.1111/1469-0691.12418 [DOI] [PubMed] [Google Scholar]
- Deshpande A., Pant C., Pasupuleti V., Rolston D. D. K., Jain A., Deshpande N., et al. (2012). Association between proton pump inhibitor therapy and Clostridium difficile infection in a meta-analysis. Clin. Gastroenterol. Hepatol. 10 225–233. 10.1016/j.cgh.2011.09.030 [DOI] [PubMed] [Google Scholar]
- Dethlefsen L., Huse S., Sogin M. L., Relman D. A. (2008). The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol. 6:e280. 10.1371/journal.pbio.0060280 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dethlefsen L., Relman D. A. (2011). Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proc. Natl. Acad. Sci. U.S.A. 108(Suppl. 1), 4554–4561. 10.1073/pnas.1000087107 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dial S., Alrasadi K., Manoukian C., Huang A., Menzies D. (2004). Risk of Clostridium difficile diarrhea among hospital inpatients prescribed proton pump inhibitors: cohort and case-control studies. CMAJ 171 33–38. 10.1503/cmaj.1040876 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dominguez-Bello M. G., Costello E. K., Contreras M., Magris M., Hidalgo G., Fierer N., et al. (2010). Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns. Proc. Natl. Acad. Sci. U.S.A. 107 11971–11975. 10.1073/pnas.1002601107 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Drudy D., Fanning S., Kyne L. (2007). Toxin A-negative, toxin B-positive Clostridium difficile. Int. J. Infect. Dis. 11 5–10. 10.1016/j.ijid.2006.04.003 [DOI] [PubMed] [Google Scholar]
- Dubberke E. R., Olsen M. A. (2012). Burden of Clostridium difficile on the healthcare system. Clin. Infect. Dis. 55(Suppl. 2), S88–S92. 10.1093/cid/cis335 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Dupuy B., Govind R., Antunes A., Matamouros S. (2008). Clostridium difficile toxin synthesis is negatively regulated by TcdC. J. Med. Microbiol. 57 685–689. 10.1099/jmm.0.47775-0 [DOI] [PubMed] [Google Scholar]
- Eglow R., Pothoulakis C., Itzkowitz S., Israel E. J., O’Keane C. J., Gong D., et al. (1992). Diminished Clostridium difficile toxin A sensitivity in newborn rabbit ileum is associated with decreased toxin A receptor. J. Clin. Invest. 90 822–829. 10.1172/JCI115957 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Eyre D. W., Griffiths D., Vaughan A., Golubchik T., Acharya M., O’Connor L., et al. (2013). Asymptomatic Clostridium difficile colonisation and onward transmission. PLoS One 8:e78445. 10.1371/journal.pone.0078445 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Fekety R., Shah A. B. (1993). Diagnosis and treatment of Clostridium difficile colitis. JAMA 269 71–75. 10.1001/jama.1993.03500010081036 [DOI] [PubMed] [Google Scholar]
- Furuya-Kanamori L., Marquess J., Yakob L., Riley T. V., Paterson D. L., Foster N. F., et al. (2015). Asymptomatic Clostridium difficile colonization: epidemiology and clinical implications. BMC Infect. Dis. 15:516. 10.1186/s12879-015-1258-4 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gao L., Maidment I., Matthews F. E., Robinson L., Brayne C. (2018). Medication usage change in older people (65+) in England over 20 years: findings from CFAS I and CFAS II. Age Ageing 47 220–225. 10.1093/ageing/afx158 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Garibaldi R. A., Nurse B. A. (1986). Infections in the elderly. Am. J. Med. 81 53–58. 10.1016/0002-9343(86)90514-0 [DOI] [PubMed] [Google Scholar]
- Gerding D. N., Johnson S., Peterson L. R., Mulligan M. E., Silva J. (1995). Clostridium difficile-associated diarrhea and colitis. Infect. Control Hosp. Epidemiol. 16 459–477. 10.2307/30141083 [DOI] [PubMed] [Google Scholar]
- Gerding D. N., Johnson S., Rupnik M., Aktories K. (2014). Clostridium difficile binary toxin CDT: mechanism, epidemiology, and potential clinical importance. Gut Microbes 5 15–27. 10.4161/gmic.26854 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gerding D. N., Meyer T., Lee C., Cohen S. H., Murthy U. K., Poirier A., et al. (2015). Administration of spores of nontoxigenic Clostridium difficile strain M3 for prevention of recurrent C. difficile infection: a randomized clinical trial. JAMA 313 1719–1727. 10.1001/jama.2015.3725 [DOI] [PubMed] [Google Scholar]
- Gerding D. N., Muto C. A., Owens R. C. (2008). Measures to control and prevent Clostridium difficile infection. Clin. Infect. Dis. 46(Suppl. 1), S43–S49. 10.1086/521861 [DOI] [PubMed] [Google Scholar]
- Geric B., Carman R. J., Rupnik M., Genheimer C. W., Sambol S. P., Lyerly D. M., et al. (2006). Binary toxin-producing, large clostridial toxin-negative Clostridium difficile strains are enterotoxic but do not cause disease in hamsters. J. Infect. Dis. 193 1143–1150. 10.1086/501368 [DOI] [PubMed] [Google Scholar]
- Giel J. L., Sorg J. A., Sonenshein A. L., Zhu J. (2010). Metabolism of bile salts in mice influences spore germination in Clostridium difficile. PLoS One 5:e8740. 10.1371/journal.pone.0008740 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Gil F., Lagos-Moraga S., Calderón-Romero P., Pizarro-Guajardo M., Paredes-Sabja D. (2017). Updates on Clostridium difficile spore biology. Anaerobe 45 3–9. 10.1016/j.anaerobe.2017.02.018 [DOI] [PubMed] [Google Scholar]
- Guerrero D. M., Becker J. C., Eckstein E. C., Kundrapu S., Deshpande A., Sethi A. K., et al. (2013). Asymptomatic carriage of toxigenic Clostridium difficile by hospitalized patients. J. Hosp. Infect. 85 155–158. 10.1016/j.jhin.2013.07.002 [DOI] [PubMed] [Google Scholar]
- Hafiz S., Oakley C. L. (1976). Clostridium difficile: isolation and characteristics. J. Med. Microbiol. 9 129–136. 10.1099/00222615-9-2-129 [DOI] [PubMed] [Google Scholar]
- Hagel S., Epple H.-J., Feurle G. E., Kern W. V., Lynen Jansen P., Malfertheiner P., et al. (2015). S2k-Leitlinie Gastrointestinale Infektionen und Morbus Whipple. Z. Gastroenterol. 53 418–459. 10.1055/s-0034-1399337 [DOI] [PubMed] [Google Scholar]
- Hall I. C. and O′Toole E. (1935). Intestinal flora in new-born infants: with a description of a new pathogenic anaerobe, Bacillus difficilis. Am. J. Dis. Child. 2 390–402. 10.1001/archpedi.1935.01970020105010 [DOI] [Google Scholar]
- Hamilton M. J., Weingarden A. R., Unno T., Khoruts A., Sadowsky M. J. (2013). High-throughput DNA sequence analysis reveals stable engraftment of gut microbiota following transplantation of previously frozen fecal bacteria. Gut Microbes 4 125–135. 10.4161/gmic.23571 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hell M., Sickau K., Chmelizek G., Kern J. M., Maass M., Huhulescu S., et al. (2012). Absence of Clostridium difficile in asymptomatic hospital staff. Am. J. Infect. Control 40 1023–1024. 10.1016/j.ajic.2012.01.018 [DOI] [PubMed] [Google Scholar]
- Henrich T. J., Krakower D., Bitton A., Yokoe D. S. (2009). Clinical risk factors for severe Clostridium difficile-associated disease. Emerg. Infect. Dis. 15 415–422. 10.3201/eid1503.080312 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hopkins M. J., Sharp R., Macfarlane G. T. (2001). Age and disease related changes in intestinal bacterial populations assessed by cell culture, 16S rRNA abundance, and community cellular fatty acid profiles. Gut 48 198–205. 10.1136/gut.48.2.198 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Howerton A., Ramirez N., Abel-Santos E. (2011). Mapping interactions between germinants and Clostridium difficile spores. J. Bacteriol. 193 274–282. 10.1128/JB.00980-10 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Huurre A., Kalliomäki M., Rautava S., Rinne M., Salminen S., Isolauri E. (2008). Mode of delivery - effects on gut microbiota and humoral immunity. Neonatology 93 236–240. 10.1159/000111102 [DOI] [PubMed] [Google Scholar]
- Ishida Y., Maegawa T., Kondo T., Kimura A., Iwakura Y., Nakamura S., et al. (2004). Essential involvement of IFN-gamma in Clostridium difficile toxin A-induced enteritis. J. Immunol. 172 3018–3025. 10.4049/jimmunol.172.5.3018 [DOI] [PubMed] [Google Scholar]
- Jakobsson H. E., Jernberg C., Andersson A. F., Sjölund-Karlsson M., Jansson J. K., Engstrand L. (2010). Short-term antibiotic treatment has differing long-term impacts on the human throat and gut microbiome. PLoS One 5:e9836. 10.1371/journal.pone.0009836 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Jangi S., Lamont J. T. (2010). Asymptomatic colonization by Clostridium difficile in infants: implications for disease in later life. J. Pediatr. Gastroenterol. Nutr. 51 2–7. 10.1097/MPG.0b013e3181d29767 [DOI] [PubMed] [Google Scholar]
- Jump R. L. P., Pultz M. J., Donskey C. J. (2007). Vegetative Clostridium difficile survives in room air on moist surfaces and in gastric contents with reduced acidity: a potential mechanism to explain the association between proton pump inhibitors and C. difficile-associated diarrhea? Antimicrob. Agents Chemother. 51 2883–2887. 10.1128/AAC.01443-06 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kallen A. J., Thompson A., Ristaino P., Chapman L., Nicholson A., Sim B.-T., et al. (2009). Complete restriction of fluoroquinolone use to control an outbreak of Clostridium difficile infection at a community hospital. Infect. Control Hosp. Epidemiol. 30 264–272. 10.1086/595694 [DOI] [PubMed] [Google Scholar]
- Kassam Z., Lee C. H., Yuan Y., Hunt R. H. (2013). Fecal microbiota transplantation for Clostridium difficile infection: systematic review and meta-analysis. Am. J. Gastroenterol. 108 500–508. 10.1038/ajg.2013.59 [DOI] [PubMed] [Google Scholar]
- Kato H., Kita H., Karasawa T., Maegawa T., Koino Y., Takakuwa H., et al. (2001). Colonisation and transmission of Clostridium difficile in healthy individuals examined by PCR ribotyping and pulsed-field gel electrophoresis. J. Med. Microbiol. 50 720–727. 10.1099/0022-1317-50-8-720 [DOI] [PubMed] [Google Scholar]
- Keel K., Brazier J. S., Post K. W., Weese S., Songer J. G. (2007). Prevalence of PCR ribotypes among Clostridium difficile isolates from pigs, calves, and other species. J. Clin. Microbiol. 45 1963–1964. 10.1128/JCM.00224-07 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Kelly C. P. (1996). Immune response to Clostridium difficile infection. Eur. J. Gastroenterol. Hepatol. 8 1048–1053. 10.1097/00042737-199611000-00004 [DOI] [PubMed] [Google Scholar]
- Kelly C. P., LaMont J. T. (1998). Clostridium difficile infection. Annu. Rev. Med. 49 375–390. 10.1146/annurev.med.49.1.375 [DOI] [PubMed] [Google Scholar]
- Khanafer N., Vanhems P., Barbut F., Luxemburger C. (2017). Factors associated with Clostridium difficile infection: a nested case-control study in a three year prospective cohort. Anaerobe 44 117–123. 10.1016/j.anaerobe.2017.03.003 [DOI] [PubMed] [Google Scholar]
- Khanna S., Baddour L. M., Huskins W. C., Kammer P. P., Faubion W. A., Zinsmeister A. R., et al. (2013). The epidemiology of Clostridium difficile infection in children: a population-based study. Clin. Infect. Dis. 56 1401–1406. 10.1093/cid/cit075 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Khanna S., Pardi D. S., Kelly C. R., Kraft C. S., Dhere T., Henn M. R., et al. (2016). A novel microbiome therapeutic increases gut microbial diversity and prevents recurrent Clostridium difficile infection. J. Infect. Dis. 214 173–181. 10.1093/infdis/jiv766 [DOI] [PubMed] [Google Scholar]
- Kim J. H., Toy D., Muder R. R. (2011). Clostridium difficile infection in a long-term care facility: hospital-associated illness compared with long-term care-associated illness. Infect. Control Hosp. Epidemiol. 32 656–660. 10.1086/660767 [DOI] [PubMed] [Google Scholar]
- Kobayashi T. (1983). Studies on Clostridium difficile and antimicrobial associated diarrhea or colitis. Jpn. J. Antibiot. 36 464–476. [PubMed] [Google Scholar]
- Komatsu M., Kato H., Aihara M., Shimakawa K., Iwasaki M., Nagasaka Y., et al. (2003). High frequency of antibiotic-associated diarrhea due to toxin A-negative, toxin B-positive Clostridium difficile in a hospital in Japan and risk factors for infection. Eur. J. Clin. Microbiol. Infect. Dis. 22 525–529. 10.1007/s10096-003-0992-5 [DOI] [PubMed] [Google Scholar]
- Kong L. Y., Dendukuri N., Schiller I., Bourgault A.-M., Brassard P., Poirier L., et al. (2015). Predictors of asymptomatic Clostridium difficile colonization on hospital admission. Am. J. Infect. Control 43 248–253. 10.1016/j.ajic.2014.11.024 [DOI] [PubMed] [Google Scholar]
- Kuijper E. J., Coignard B., Tüll P. (2006). Emergence of Clostridium difficile-associated disease in North America and Europe. Clin. Microbiol. Infect. 12(Suppl. 6), 2–18. 10.1111/j.1469-0691.2006.01580.x [DOI] [PubMed] [Google Scholar]
- Kyne L., Warny M., Qamar A., Kelly C. P. (2000). Asymptomatic carriage of Clostridium difficile and serum levels of IgG antibody against toxin A. N. Engl. J. Med. 342 390–397. 10.1056/NEJM200002103420604 [DOI] [PubMed] [Google Scholar]
- Kyne L., Warny M., Qamar A., Kelly C. P. (2001). Association between antibody response to toxin A and protection against recurrent Clostridium difficile diarrhoea. Lancet 357 189–193. 10.1016/S0140-6736(00)03592-3 [DOI] [PubMed] [Google Scholar]
- Larson H. E., Barclay F. E., Honour P., Hill I. D. (1982). Epidemiology of Clostridium difficile in infants. J. Infect. Dis. 146 727–733. 10.1093/infdis/146.6.727 [DOI] [PubMed] [Google Scholar]
- Lawley T. D., Clare S., Walker A. W., Stares M. D., Connor T. R., Raisen C., et al. (2012). Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice. PLoS Pathog. 8:e1002995. 10.1371/journal.ppat.1002995 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Leekha S., Aronhalt K. C., Sloan L. M., Patel R., Orenstein R. (2013). Asymptomatic Clostridium difficile colonization in a tertiary care hospital: admission prevalence and risk factors. Am. J. Infect. Control 41 390–393. 10.1016/j.ajic.2012.09.023 [DOI] [PubMed] [Google Scholar]
- Lessa F. C., Winston L. G., McDonald L. C. (2015). Burden of Clostridium difficile infection in the United States. N. Engl. J. Med. 372 2369–2370. 10.1056/NEJMc1505190 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ley R. E., Peterson D. A., Gordon J. I. (2006). Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell 124 837–848. 10.1016/j.cell.2006.02.017 [DOI] [PubMed] [Google Scholar]
- Lo Vecchio A., Zacur G. M. (2012). Clostridium difficile infection: an update on epidemiology, risk factors, and therapeutic options. Curr. Opin. Gastroenterol. 28 1–9. 10.1097/MOG.0b013e32834bc9a9 [DOI] [PubMed] [Google Scholar]
- Longtin Y., Paquet-Bolduc B., Gilca R., Garenc C., Fortin E., Longtin J., et al. (2016). Effect of detecting and isolating Clostridium difficile carriers at hospital admission on the incidence of C. difficile infections: a quasi-experimental controlled study. JAMA Intern. Med. 176 796–804. 10.1001/jamainternmed.2016.0177 [DOI] [PubMed] [Google Scholar]
- Loo V. G., Bourgault A.-M., Poirier L., Lamothe F., Michaud S., Turgeon N., et al. (2011). Host and pathogen factors for Clostridium difficile infection and colonization. N. Engl. J. Med. 365 1693–1703. 10.1056/NEJMoa1012413 [DOI] [PubMed] [Google Scholar]
- Loo V. G., Poirier L., Miller M. A., Oughton M., Libman M. D., Michaud S., et al. (2005). A predominantly clonal multi-institutional outbreak of Clostridium difficile-associated diarrhea with high morbidity and mortality. N. Engl. J. Med. 353 2442–2449. 10.1056/NEJMoa051639 [DOI] [PubMed] [Google Scholar]
- Louie T. J., Miller M. A., Mullane K. M., Weiss K., Lentnek A., Golan Y., et al. (2011). Fidaxomicin versus vancomycin for Clostridium difficile infection. N. Engl. J. Med. 364 422–431. 10.1056/NEJMoa0910812 [DOI] [PubMed] [Google Scholar]
- Lyerly D. M., Saum K. E., MacDonald D. K., Wilkins T. D. (1985). Effects of Clostridium difficile toxins given intragastrically to animals. Infect. Immun. 47 349–352. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Lyras D., O’Connor J. R., Howarth P. M., Sambol S. P., Carter G. P., Phumoonna T., et al. (2009). Toxin B is essential for virulence of Clostridium difficile. Nature 458 1176–1179. 10.1038/nature07822 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Manges A. R., Labbe A., Loo V. G., Atherton J. K., Behr M. A., Masson L., et al. (2010). Comparative metagenomic study of alterations to the intestinal microbiota and risk of nosocomial Clostridium difficile-associated disease. J. Infect. Dis. 202 1877–1884. 10.1086/657319 [DOI] [PubMed] [Google Scholar]
- Marciniak C., Chen D., Stein A. C., Semik P. E. (2006). Prevalence of Clostridium difficile colonization at admission to rehabilitation. Arch. Phys. Med. Rehabil. 87 1086–1090. 10.1016/j.apmr.2006.03.020 [DOI] [PubMed] [Google Scholar]
- Mariat D., Firmesse O., Levenez F., Guimarães V., Sokol H., Doré J., et al. (2009). The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age. BMC Microbiol. 9:123. 10.1186/1471-2180-9-123 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Matamoros S., Gras-Leguen C., Le Vacon F., Potel G., de La Cochetiere M.-F. (2013). Development of intestinal microbiota in infants and its impact on health. Trends Microbiol. 21 167–173. 10.1016/j.tim.2012.12.001 [DOI] [PubMed] [Google Scholar]
- Maziade P.-J., Pereira P., Goldstein E. J. C. (2015). A decade of experience in primary prevention of Clostridium difficile infection at a community hospital using the probiotic combination Lactobacillus acidophilus CL1285 Lactobacillus casei LBC80R, and Lactobacillus rhamnosus CLR2 (Bio-K+). Clin. Infect. Dis. 60(Suppl. 2), S144–S147. 10.1093/cid/civ178 [DOI] [PubMed] [Google Scholar]
- McCusker M. E., Harris A. D., Perencevich E., Roghmann M.-C. (2003). Fluoroquinolone use and Clostridium difficile-associated diarrhea. Emerg. Infect. Dis. 9 730–733. 10.3201/eid0906.020385 [DOI] [PMC free article] [PubMed] [Google Scholar]
- McDonald L. C., Owings M., Jernigan D. B. (2006). Clostridium difficile infection in patients discharged from US short-stay hospitals, 1996-2003. Emerg. Infect. Dis. 12 409–415. 10.3201/eid1205.051064 [DOI] [PMC free article] [PubMed] [Google Scholar]
- McFarland L. V., Beneda H. W., Clarridge J. E., Raugi G. J. (2007a). Implications of the changing face of Clostridium difficile disease for health care practitioners. Am. J. Infect. Control 35 237–253. 10.1016/j.ajic.2006.06.004 [DOI] [PubMed] [Google Scholar]
- McFarland L. V., Clarridge J. E., Beneda H. W., Raugi G. J. (2007b). Fluoroquinolone use and risk factors for Clostridium difficile-associated disease within a Veterans Administration health care system. Clin. Infect. Dis. 45 1141–1151. 10.1086/522187 [DOI] [PubMed] [Google Scholar]
- McFarland L. V., Elmer G. W., Stamm W. E., Mulligan M. E. (1991). Correlation of immunoblot type, enterotoxin production, and cytotoxin production with clinical manifestations of Clostridium difficile infection in a cohort of hospitalized patients. Infect. Immun. 59 2456–2462. [DOI] [PMC free article] [PubMed] [Google Scholar]
- McFarland L. V., Mulligan M. E., Kwok R. Y., Stamm W. E. (1989). Nosocomial acquisition of Clostridium difficile infection. N. Engl. J. Med. 320 204–210. 10.1056/NEJM198901263200402 [DOI] [PubMed] [Google Scholar]
- McFarland L. V., Ozen M., Dinleyici E. C., Goh S. (2016). Comparison of pediatric and adult antibiotic-associated diarrhea and Clostridium difficile infections. World J. Gastroenterol. 22 3078–3104. 10.3748/wjg.v22.i11.3078 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Merrigan M. M., Sambol S. P., Johnson S., Gerding D. N. (2003). Prevention of fatal Clostridium difficile-associated disease during continuous administration of clindamycin in hamsters. J. Infect. Dis. 188 1922–1927. 10.1086/379836 [DOI] [PubMed] [Google Scholar]
- Merrigan M. M., Sambol S. P., Johnson S., Gerding D. N. (2009). New approach to the management of Clostridium difficile infection: colonisation with non-toxigenic C. difficile during daily ampicillin or ceftriaxone administration. Int. J. Antimicrob. Agents 33(Suppl. 1), S46–S50. 10.1016/S0924-8579(09)70017-2 [DOI] [PubMed] [Google Scholar]
- Meyer G. K. A., Neetz A., Brandes G., Tsikas D., Butterfield J. H., Just I., et al. (2007). Clostridium difficile toxins A and B directly stimulate human mast cells. Infect. Immun. 75 3868–3876. 10.1128/IAI.00195-07 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Miller M., Gravel D., Mulvey M., Taylor G., Boyd D., Simor A., et al. (2010). Health care-associated Clostridium difficile infection in Canada: patient age and infecting strain type are highly predictive of severe outcome and mortality. Clin. Infect. Dis. 50 194–201. 10.1086/649213 [DOI] [PubMed] [Google Scholar]
- Moore P., Kyne L., Martin A., Solomon K. (2013). Germination efficiency of clinical Clostridium difficile spores and correlation with ribotype, disease severity and therapy failure. J. Med. Microbiol. 62 1405–1413. 10.1099/jmm.0.056614-0 [DOI] [PubMed] [Google Scholar]
- Morris J. G., Jarvis W. R., Nunez-Montiel O. L., Towns M. L., Thompson F. S., Dowell V. R., et al. (1984). Clostridium difficile. Colonization and toxin production in a cohort of patients with malignant hematologic disorders. Arch. Intern. Med. 144 967–969. 10.1001/archinte.1984.00350170109020 [DOI] [PubMed] [Google Scholar]
- Muegge B. D., Kuczynski J., Knights D., Clemente J. C., González A., Fontana L., et al. (2011). Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. Science 332 970–974. 10.1126/science.1198719 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Muto C. A., Pokrywka M., Shutt K., Mendelsohn A. B., Nouri K., Posey K., et al. (2005). A large outbreak of Clostridium difficile-associated disease with an unexpected proportion of deaths and colectomies at a teaching hospital following increased fluoroquinolone use. Infect. Control Hosp. Epidemiol. 26 273–280. 10.1086/502539 [DOI] [PubMed] [Google Scholar]
- Naaber P., Lehto E., Salminen S., Mikelsaar M. (1996). Inhibition of adhesion of Clostridium difficile to Caco-2 cells. FEMS Immunol. Med. Microbiol. 14 205–209. 10.1111/j.1574-695X.1996.tb00288.x [DOI] [PubMed] [Google Scholar]
- Nakamura S., Mikawa M., Nakashio S., Takabatake M., Okado I., Yamakawa K., et al. (1981). Isolation of Clostridium difficile from the feces and the antibody in sera of young and elderly adults. Microbiol. Immunol. 25 345–351. 10.1111/j.1348-0421.1981.tb00036.x [DOI] [PubMed] [Google Scholar]
- Nelson D. E., Auerbach S. B., Baltch A. L., Desjardin E., Beck-Sague C., Rheal C., et al. (1994). Epidemic Clostridium difficile-associated diarrhea: role of second- and third-generation cephalosporins. Infect. Control Hosp. Epidemiol. 15 88–94. 10.2307/30145537 [DOI] [PubMed] [Google Scholar]
- Novack L., Kogan S., Gimpelevich L., Howell M., Borer A., Kelly C. P., et al. (2014). Acid suppression therapy does not predispose to Clostridium difficile infection: the case of the potential bias. PLoS One 9:e110790. 10.1371/journal.pone.0110790 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Nylund C. M., Goudie A., Garza J. M., Fairbrother G., Cohen M. B. (2011). Clostridium difficile infection in hospitalized children in the United States. Arch. Pediatr. Adolesc. Med. 165 451–457. 10.1001/archpediatrics.2010.282 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ogra P. L. (2010). Ageing and its possible impact on mucosal immune responses. Ageing Res. Rev. 9 101–106. 10.1016/j.arr.2009.07.007 [DOI] [PubMed] [Google Scholar]
- Ozaki E., Kato H., Kita H., Karasawa T., Maegawa T., Koino Y., et al. (2004). Clostridium difficile colonization in healthy adults: transient colonization and correlation with enterococcal colonization. J. Med. Microbiol. 53 167–172. 10.1099/jmm.0.05376-0 [DOI] [PubMed] [Google Scholar]
- Pakpour S., Bhanvadia A., Zhu R., Amarnani A., Gibbons S. M., Gurry T., et al. (2017). Identifying predictive features of Clostridium difficile infection recurrence before, during, and after primary antibiotic treatment. Microbiome 5:148. 10.1186/s40168-017-0368-1 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Peach S. L., Borriello S. P., Gaya H., Barclay F. E., Welch A. R. (1986). Asymptomatic carriage of Clostridium difficile in patients with cystic fibrosis. J. Clin. Pathol. 39 1013–1018. 10.1136/jcp.39.9.1013 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pépin J., Valiquette L., Cossette B. (2005). Mortality attributable to nosocomial Clostridium difficile-associated disease during an epidemic caused by a hypervirulent strain in Quebec. CMAJ 173 1037–1042. 10.1503/cmaj.050978 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Peterfreund G. L., Vandivier L. E., Sinha R., Marozsan A. J., Olson W. C., Zhu J., et al. (2012). Succession in the gut microbiome following antibiotic and antibody therapies for Clostridium difficile. PLoS One 7:e46966. 10.1371/journal.pone.0046966 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Pirs T., Ocepek M., Rupnik M. (2008). Isolation of Clostridium difficile from food animals in Slovenia. J. Med. Microbiol. 57 790–792. 10.1099/jmm.0.47669-0 [DOI] [PubMed] [Google Scholar]
- Pochapin M. (2000). The effect of probiotics on Clostridium difficile diarrhea. Am. J. Gastroenterol. 95 S11–S13. 10.1016/S0002-9270(99)00809-6 [DOI] [PubMed] [Google Scholar]
- Pruitt R. N., Lacy D. B. (2012). Toward a structural understanding of Clostridium difficile toxins A and B. Front. Cell. Infect. Microbiol. 2:28. 10.3389/fcimb.2012.00028 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rajilić-Stojanović M., Heilig H. G. H. J., Molenaar D., Kajander K., Surakka A., Smidt H., et al. (2009). Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults. Environ. Microbiol. 11 1736–1751. 10.1111/j.1462-2920.2009.01900.x [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rea M. C., Clayton E., O’Connor P. M., Shanahan F., Kiely B., Ross R. P., et al. (2007). Antimicrobial activity of lacticin 3147 against clinical Clostridium difficile strains. J. Med. Microbiol. 56 940–946. 10.1099/jmm.0.47085-0 [DOI] [PubMed] [Google Scholar]
- Rea M. C., O’Sullivan O., Shanahan F., O’Toole P. W., Stanton C., Ross R. P., et al. (2012). Clostridium difficile carriage in elderly subjects and associated changes in the intestinal microbiota. J. Clin. Microbiol. 50 867–875. 10.1128/JCM.05176-11 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Reeves A. E., Koenigsknecht M. J., Bergin I. L., Young V. B. (2012). Suppression of Clostridium difficile in the gastrointestinal tracts of germfree mice inoculated with a murine isolate from the family Lachnospiraceae. Infect. Immun. 80 3786–3794. 10.1128/IAI.00647-12 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Reeves A. E., Theriot C. M., Bergin I. L., Huffnagle G. B., Schloss P. D., Young V. B. (2011). The interplay between microbiome dynamics and pathogen dynamics in a murine model of Clostridium difficile infection. Gut Microbes 2 145–158. 10.4161/gmic.2.3.16333 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Reichardt C., Chaberny I. F., Kola A., Mattner F., Vonberg R. P., Gastmeier P. (2007). Dramatischer Anstieg von Clostridium-difficile-assoziierter Diarrhoe in Deutschland: Ist der neue Stamm PCR-Ribotyp 027 bereits angekommen? Dtsch. Med. Wochenschr. 132 223–228. 10.1055/s-2007-959314 [DOI] [PubMed] [Google Scholar]
- Richardson S. A., Alcock P. A., Gray J. (1983). Clostridium difficile and its toxin in healthy neonates. Br. Med. J. (Clin. Res. Ed) 287:878. 10.1136/bmj.287.6396.878 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Riggs M. M., Sethi A. K., Zabarsky T. F., Eckstein E. C., Jump R. L. P., Donskey C. J. (2007). Asymptomatic carriers are a potential source for transmission of epidemic and nonepidemic Clostridium difficile strains among long-term care facility residents. Clin. Infect. Dis. 45 992–998. 10.1086/521854 [DOI] [PubMed] [Google Scholar]
- Ringel Y., Maharshak N. (2013). Intestinal microbiota and immune function in the pathogenesis of irritable bowel syndrome. Am. J. Physiol. Gastrointest. Liver Physiol. 305 G529–G541. 10.1152/ajpgi.00207.2012 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Robinson C. J., Young V. B. (2010). Antibiotic administration alters the community structure of the gastrointestinal micobiota. Gut Microbes 1 279–284. 10.4161/gmic.1.4.12614 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rodriguez-Palacios A., Reid-Smith R. J., Staempfli H. R., Daignault D., Janecko N., Avery B. P., et al. (2009). Possible seasonality of Clostridium difficile in retail meat, Canada. Emerg. Infect. Dis. 15 802–805. 10.3201/eid1505.081084 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rodriguez-Palacios A., Staempfli H. R., Duffield T., Weese J. S. (2007). Clostridium difficile in retail ground meat, Canada. Emerg. Infect. Dis. 13 485–487. 10.3201/eid1303.060988 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Rolfe R. D., Song W. (1995). Immunoglobulin and non-immunoglobulin components of human milk inhibit Clostridium difficile toxin A-receptor binding. J. Med. Microbiol. 42 10–19. 10.1099/00222615-42-1-10 [DOI] [PubMed] [Google Scholar]
- Rousseau C., Poilane I., Pontual L., de Maherault A.-C., Le Monnier A., Collignon A. (2012). Clostridium difficile carriage in healthy infants in the community: a potential reservoir for pathogenic strains. Clin. Infect. Dis. 55 1209–1215. 10.1093/cid/cis637 [DOI] [PubMed] [Google Scholar]
- Rupnik M., Wilcox M. H., Gerding D. N. (2009). Clostridium difficile infection: new developments in epidemiology and pathogenesis. Nat. Rev. Microbiol. 7 526–536. 10.1038/nrmicro2164 [DOI] [PubMed] [Google Scholar]
- Sambol S. P., Merrigan M. M., Tang J. K., Johnson S., Gerding D. N. (2002). Colonization for the prevention of Clostridium difficile disease in hamsters. J. Infect. Dis. 186 1781–1789. 10.1086/345676 [DOI] [PubMed] [Google Scholar]
- Samore M. H., DeGirolami P. C., Tlucko A., Lichtenberg D. A., Melvin Z. A., Karchmer A. W. (1994). Clostridium difficile colonization and diarrhea at a tertiary care hospital. Clin. Infect. Dis. 18 181–187. 10.1093/clinids/18.2.181 [DOI] [PubMed] [Google Scholar]
- Sarker M. R., Paredes-Sabja D. (2012). Molecular basis of early stages of Clostridium difficile infection: germination and colonization. Future Microbiol. 7 933–943. 10.2217/fmb.12.64 [DOI] [PubMed] [Google Scholar]
- Schirmer J., Aktories K. (2004). Large clostridial cytotoxins: cellular biology of Rho/Ras-glucosylating toxins. Biochim. Biophys. Acta 1673 66–74. 10.1016/j.bbagen.2004.03.014 [DOI] [PubMed] [Google Scholar]
- Schultsz C., van den Berg F. M., Kate F. W., ten Tytgat G. N., Dankert J. (1999). The intestinal mucus layer from patients with inflammatory bowel disease harbors high numbers of bacteria compared with controls. Gastroenterology 117 1089–1097. 10.1016/S0016-5085(99)70393-8 [DOI] [PubMed] [Google Scholar]
- Schwartz K. L., Darwish I., Richardson S. E., Mulvey M. R., Thampi N. (2014). Severe clinical outcome is uncommon in Clostridium difficile infection in children: a retrospective cohort study. BMC Pediatr. 14:28. 10.1186/1471-2431-14-28 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sekirov I., Russell S. L., Antunes L. C. M., Finlay B. B. (2010). Gut microbiota in health and disease. Physiol. Rev. 90 859–904. 10.1152/physrev.00045.2009 [DOI] [PubMed] [Google Scholar]
- Shen A. (2012). Clostridium difficile toxins: mediators of inflammation. J. Innate Immun. 4 149–158. 10.1159/000332946 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Shen N. T., Maw A., Tmanova L. L., Pino A., Ancy K., Crawford C. V., et al. (2017). Timely use of probiotics in hospitalized adults prevents Clostridium difficile infection: a systematic review with meta-regression analysis. Gastroenterology 152 1889.e9–1900.e9. 10.1053/j.gastro.2017.02.003 [DOI] [PubMed] [Google Scholar]
- Shim J. K., Johnson S., Samore M. H., Bliss D. Z., Gerding D. N. (1998). Primary symptomless colonisation by Clostridium difficile and decreased risk of subsequent diarrhoea. Lancet 351 633–636. 10.1016/S0140-6736(97)08062-8 [DOI] [PubMed] [Google Scholar]
- Simor A. E., Bradley S. F., Strausbaugh L. J., Crossley K., Nicolle L. E. (2002). Clostridium difficile in long-term-care facilities for the elderly. Infect. Control Hosp. Epidemiol. 23 696–703. 10.1086/501997 [DOI] [PubMed] [Google Scholar]
- Songer J. G., Jones R., Anderson M. A., Barbara A. J., Post K. W., Trinh H. T. (2007). Prevention of porcine Clostridium difficile-associated disease by competitive exclusion with nontoxigenic organisms. Vet. Microbiol. 124 358–361. 10.1016/j.vetmic.2007.04.019 [DOI] [PubMed] [Google Scholar]
- Sorg J. A., Sonenshein A. L. (2008). Bile salts and glycine as cogerminants for Clostridium difficile spores. J. Bacteriol. 190 2505–2512. 10.1128/JB.01765-07 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Spigaglia P. (2016). Recent advances in the understanding of antibiotic resistance in Clostridium difficile infection. Ther. Adv. Infect. Dis. 3 23–42. 10.1177/2049936115622891 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Stark P. L., Lee A. (1982). Clostridia isolated from the feces of infants during the first year of life. J. Pediatr. 100 362–365. 10.1016/S0022-3476(82)80430-7 [DOI] [PubMed] [Google Scholar]
- Steele J., Mukherjee J., Parry N., Tzipori S. (2013). Antibody against TcdB, but not TcdA, prevents development of gastrointestinal and systemic Clostridium difficile disease. J. Infect. Dis. 207 323–330. 10.1093/infdis/jis669 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Stevens V., Dumyati G., Fine L. S., Fisher S. G., van Wijngaarden E. (2011). Cumulative antibiotic exposures over time and the risk of Clostridium difficile infection. Clin. Infect. Dis. 53 42–48. 10.1093/cid/cir301 [DOI] [PubMed] [Google Scholar]
- Sullivan A., Edlund C., Nord C. E. (2001). Effect of antimicrobial agents on the ecological balance of human microflora. Lancet Infect. Dis. 1 101–114. 10.1016/S1473-3099(01)00066-4 [DOI] [PubMed] [Google Scholar]
- Tattevin P., Buffet-Bataillon S., Donnio P.-Y., Revest M., Michelet C. (2013). Clostridium difficile infections: do we know the real dimensions of the problem? Int. J. Antimicrob. Agents 42(Suppl.) S36–S40. 10.1016/j.ijantimicag.2013.04.009 [DOI] [PubMed] [Google Scholar]
- Tedesco F. J., Barton R. W., Alpers D. H. (1974). Clindamycin-associated colitis. A prospective study. Ann. Intern. Med. 81 429–433. 10.7326/0003-4819-81-4-429 [DOI] [PubMed] [Google Scholar]
- Terveer E. M., Crobach M. J. T., Sanders I. M. J. G., Vos M. C., Verduin C. M., Kuijper E. J. (2017). Detection of Clostridium difficile in feces of asymptomatic patients admitted to the hospital. J. Clin. Microbiol. 55 403–411. 10.1128/JCM.01858-16 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Theriot C. M., Koenigsknecht M. J., Carlson P. E., Hatton G. E., Nelson A. M., Li B., et al. (2014). Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection. Nat. Commun. 5:3114. 10.1038/ncomms4114 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Thompson C. M., Gilligan P. H., Fisher M. C., Long S. S. (1983). Clostridium difficile cytotoxin in a pediatric population. Am. J. Dis. Child. 137 271–274. 10.1001/archpedi.1983.02140290057015 [DOI] [PubMed] [Google Scholar]
- Trzasko A., Leeds J. A., Praestgaard J., Lamarche M. J., McKenney D. (2012). Efficacy of LFF571 in a hamster model of Clostridium difficile infection. Antimicrob. Agents Chemother. 56 4459–4462. 10.1128/AAC.06355-11 [DOI] [PMC free article] [PubMed] [Google Scholar]
- van Dorp S. M., Smajlovic E., Knetsch C. W., Notermans D. W., de Greeff S. C., Kuijper E. J. (2017). Clinical and microbiological characteristics of Clostridium difficile infection among hospitalized children in the Netherlands. Clin. Infect. Dis. 64 192–198. 10.1093/cid/ciw699 [DOI] [PubMed] [Google Scholar]
- van Nood E., Vrieze A., Nieuwdorp M., Fuentes S., Zoetendal E. G., de Vos W. M., et al. (2013). Duodenal infusion of donor feces for recurrent Clostridium difficile. N. Engl. J. Med. 368 407–415. 10.1056/NEJMoa1205037 [DOI] [PubMed] [Google Scholar]
- Vardakas K. Z., Polyzos K. A., Patouni K., Rafailidis P. I., Samonis G., Falagas M. E. (2012). Treatment failure and recurrence of Clostridium difficile infection following treatment with vancomycin or metronidazole: a systematic review of the evidence. Int. J. Antimicrob. Agents 40 1–8. 10.1016/j.ijantimicag.2012.01.004 [DOI] [PubMed] [Google Scholar]
- Vernaya M., McAdam J., Hampton M. D. (2017). Effectiveness of probiotics in reducing the incidence of Clostridium difficile-associated diarrhea in elderly patients: a systematic review. JBI Database System. Rev. Implement. Rep. 15 140–164. 10.11124/JBISRIR-2016-003234 [DOI] [PubMed] [Google Scholar]
- Vincent C., Miller M. A., Edens T. J., Mehrotra S., Dewar K., Manges A. R. (2016). Bloom and bust: intestinal microbiota dynamics in response to hospital exposures and Clostridium difficile colonization or infection. Microbiome 4:12. 10.1186/s40168-016-0156-3 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Vincent C., Stephens D. A., Loo V. G., Edens T. J., Behr M. A., Dewar K., et al. (2013). Reductions in intestinal Clostridiales precede the development of nosocomial Clostridium difficile infection. Microbiome 1:18. 10.1186/2049-2618-1-18 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Viscidi R., Willey S., Bartlett J. G. (1981). Isolation rates and toxigenic potential of Clostridium difficile isolates from various patient populations. Gastroenterology 81 5–9. [PubMed] [Google Scholar]
- Voth D. E., Ballard J. D. (2005). Clostridium difficile toxins: mechanism of action and role in disease. Clin. Microbiol. Rev. 18 247–263. 10.1128/CMR.18.2.247-263.2005 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Warny M., Pepin J., Fang A., Killgore G., Thompson A., Brazier J., et al. (2005). Toxin production by an emerging strain of Clostridium difficile associated with outbreaks of severe disease in North America and Europe. Lancet 366 1079–1084. 10.1016/S0140-6736(05)67420-X [DOI] [PubMed] [Google Scholar]
- Weese J. S. (2010). Clostridium difficile in food–innocent bystander or serious threat? Clin. Microbiol. Infect. 16 3–10. 10.1111/j.1469-0691.2009.03108.x [DOI] [PubMed] [Google Scholar]
- Welkon C. J., Long S. S., Thompson C. M., Gilligan P. H. (1985). Clostridium difficile in patients with cystic fibrosis. Am. J. Dis. Child. 139 805–808. 10.1001/archpedi.1985.02140100067032 [DOI] [PubMed] [Google Scholar]
- Werner H., Kuntsche J. (2000). Infektionen im Alter–was ist anders? Z. Gerontol. Geriatr. 33 350–356. 10.1007/s003910070031 [DOI] [PubMed] [Google Scholar]
- Wilcox M. H., Gerding D. N., Poxton I. R., Kelly C., Nathan R., Birch T., et al. (2017). Bezlotoxumab for Prevention of Recurrent Clostridium difficile Infection. N. Engl. J. Med. 376 305–317. 10.1056/NEJMoa1602615 [DOI] [PubMed] [Google Scholar]
- Wilson K. H. (1983). Efficiency of various bile salt preparations for stimulation of Clostridium difficile spore germination. J. Clin. Microbiol. 18 1017–1019. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wilson K. H., Perini F. (1988). Role of competition for nutrients in suppression of Clostridium difficile by the colonic microflora. Infect. Immun. 56 2610–2614. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wilson K. H., Silva J., Fekety F. R. (1981). Suppression of Clostridium difficile by normal hamster cecal flora and prevention of antibiotic-associated cecitis. Infect. Immun. 34 626–628. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Winston J. A., Thanissery R., Montgomery S. A., Theriot C. M. (2016). Cefoperazone-treated mouse model of clinically-relevant Clostridium difficile strain R20291. J. Vis. Exp. 118:e54850. 10.3791/54850 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wongwanich S., Pongpech P., Dhiraputra C., Huttayananont S., Sawanpanyalert P. (2001). Characteristics of Clostridium difficile strains isolated from asymptomatic individuals and from diarrheal patients. Clin. Microbiol. Infect. 7 438–441. 10.1046/j.1198-743x.2001.00308.x [DOI] [PubMed] [Google Scholar]
- Woodmansey E. J. (2007). Intestinal bacteria and ageing. J. Appl. Microbiol. 102 1178–1186. 10.1111/j.1365-2672.2007.03400.x [DOI] [PubMed] [Google Scholar]
- Wu G. D., Chen J., Hoffmann C., Bittinger K., Chen Y.-Y., Keilbaugh S. A., et al. (2011). Linking long-term dietary patterns with gut microbial enterotypes. Science 334 105–108. 10.1126/science.1208344 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wullt M., Hagslätt M.-L. J., Odenholt I. (2003). Lactobacillus plantarum 299v for the treatment of recurrent Clostridium difficile-associated diarrhoea: a double-blind, placebo-controlled trial. Scand. J. Infect. Dis. 35 365–367. 10.1080/00365540310010985 [DOI] [PubMed] [Google Scholar]
- Yaeger M. J., Kinyon J. M., Glenn Songer J. (2007). A prospective, case control study evaluating the association between Clostridium difficile toxins in the colon of neonatal swine and gross and microscopic lesions. J. Vet. Diagn. Invest. 19 52–59. 10.1177/104063870701900108 [DOI] [PubMed] [Google Scholar]
- Yatsunenko T., Rey F. E., Manary M. J., Trehan I., Dominguez-Bello M. G., Contreras M., et al. (2012). Human gut microbiome viewed across age and geography. Nature 486 222–227. 10.1038/nature11053 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Zacharioudakis I. M., Zervou F. N., Pliakos E. E., Ziakas P. D., Mylonakis E. (2015). Colonization with toxinogenic C. difficile upon hospital admission, and risk of infection: a systematic review and meta-analysis. Am. J. Gastroenterol. 110 381–390; quiz 391. 10.1038/ajg.2015.22 [DOI] [PubMed] [Google Scholar]
- Zilberberg M. D., Shorr A. F., Kollef M. H. (2008). Increase in Clostridium difficile-related hospitalizations among infants in the United States, 2000-2005. Pediatr. Infect. Dis. J. 27 1111–1113. 10.1097/INF.0b013e31817eef13 [DOI] [PubMed] [Google Scholar]
- Zupancic M. L., Cantarel B. L., Liu Z., Drabek E. F., Ryan K. A., Cirimotich S., et al. (2012). Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome. PLoS One 7:e43052. 10.1371/journal.pone.0043052 [DOI] [PMC free article] [PubMed] [Google Scholar]