Abstract
Eukaryote cells have flexible membranes that allow them to have a variety of dynamical shapes. The shapes of the cells serve important biological functions, both for cells within an intact tissue, and during embryogenesis and cellular motility. How cells control their shapes and the structures that they form on their surface has been a subject of intensive biological research, exposing the building blocks that cells use to deform their membranes. These processes have also drawn the interest of theoretical physicists, aiming to develop models based on physics, chemistry and nonlinear dynamics. Such models explore quantitatively different possible mechanisms that the cells can employ to initiate the spontaneous formation of shapes and patterns on their membranes. We review here theoretical work where one such class of mechanisms was investigated: the coupling between curved membrane proteins, and the cytoskeletal forces that they recruit. Theory indicates that this coupling gives rise to a rich variety of membrane shapes and dynamics, while experiments indicate that this mechanism appears to drive many cellular shape changes.
This article is part of the theme issue ‘Self-organization in cell biology’.
Keywords: membrane curvature, cell shape, curved membrane proteins, actin cytoskeleton
1. Introduction
Eukaryote cells perform a large variety of different functions in the body. These functions involve requirements for the cells to assume different shapes, and dynamically reshape their membranes [1]. In order to shape (bend) the membrane the cells rely on a variety of physical forces [2–4], which involve controlling the local membrane lipid composition, composition of membrane-bound proteins [5], activity of membrane channels and pumps [6–8] and the recruitment of the cell's cytoskeleton. Over the past several decades the molecular components of all these processes have been slowly revealed, and it is often found that cells rely on a combination of mechanisms to achieve a robust shape change [9]. For example, endocytosis, which is the process of internalizing vesicles from the cell membrane, has several parallel pathways: sometimes it relies on a curved membrane-bound scaffold (composed of clathrin [10]), in conjunction with a locally distinct lipid composition, and other times it is totally dependent on the recruitment of actin polymerization [11–13]. How these different membrane components are localized and synchronized in space and time to produce the final desired dynamics is still not fully understood [14].
The above example highlights the complexity of mechanisms that control the cell shape, and the way they are usually entangled in the living cell. It is difficult to study and understand the effects of each of these mechanisms on its own, or in combination, in vivo. In vitro studies with controlled concentrations of purified components have been used to unravel the dynamics of membrane shapes, with increasing levels of sophistication. So far, most of these experiments do not include the forces that are produced by the cytoskeleton, and therefore, shed light on the passive processes that shape the membrane: variations in lipid composition and the presence of curved membrane proteins [15]. There have been several extensive reviews on the molecular components, such as lipids and curved proteins (such as the BAR (Bin–Amphiphysin–Rvs) domain proteins [16,17]) that can locally curve the membrane [18]. We term these components as ‘passive’ to distinguish them from the active cytoskeletal forces that arise from consumption of chemical energy.
While it has been so far very difficult to study by in vitro experiments the processes of membrane shape changes that involve the recruitment of the cytoskeleton [19], these processes have been studied theoretically. In this review, we concentrate on theoretical studies of the coupling between curved membrane components (CMC), such as lipid domains or membrane-bound proteins [20], and the active forces exerted by the cytoskeleton, which is recruited by the CMC. These forces can arise due to localized polymerization of cytoskeleton biopolymers (mostly cortical actin in eukaryotes [21]), and due to contractile forces applied to membrane-bound filaments by molecular motors.
We first present below a brief description of the general theoretical framework that was used for the analysis of the coupled membrane–CMC–cytoskeleton system. This is not meant to be detailed, but just to give a flavour of the type of physics and mathematics involved. Afterwards, each section is devoted to a different class of membrane shapes and dynamics that this coupling can produce. At the end of each section, following the theoretical part, we give experimental examples where this coupling was identified or is likely to exist.
2. Continuum model for coupled membrane-curved membrane component-cytoskeleton system
The theoretical analysis of the coupled system was carried out in terms of a continuum field model, where the dynamics of both the membrane and the local density of CMC are derived. We start by writing the continuum free energy, based on the elastic curvature energy of the Helfrich Hamiltonian [22], including the interactions between the membrane-adsorbed proteins and entropy [23]. For a flat membrane and isotropic spontaneous curvature this can generally be written as
2.1 |
where κ is the bending modulus of the membrane, H is the local mean curvature, n is the local density of CMC and H0 is the spontaneous curvature of the CMC. In this form, the spontaneous curvature is assumed to be isotropic, and to couple only to the mean curvature. Other forms of curvature can take into account anisotropic shapes of the CMC, such as the BAR-domain proteins [24], where the orientation and position of the CMCs couple to both principal curvatures of the membrane [25–28]. The reorientations of the anisotropic CMC are driven by thermal rotations in the plane of the membrane [26,29]. Anisotropic CMC, considered as one-dimensional curved proteins [30], are not always aligned with one principal membrane curvature, even when the thermal rotation of the molecules is neglected [31]. In addition, one could also consider a coupling between the CMC and the Gaussian curvature [25]. Note that the bending energy (first term on the right-hand side of equation (2.1)) assumes that the CMC locally bends the membrane to conform to its shape. In the coarse-grained description, this amounts to the membrane having an effective spontaneous curvature that depends on the coverage fraction n of the membrane by the CMC. For a CMC that is not infinitely rigid and has a finite bending modulus [32], the form should become [33]
2.2 |
where κ′ is the bending modulus of the CMC.
The second term in equation (2.1) gives the effective membrane tension, which is usually positive such that it resists extensions in the membrane area. The third term gives the approximate entropy of the gas of CMC, which diffuses in the plane of the (fluid) membrane. The last two terms give the direct interaction between the CMC, which is taken to be attractive J > 0. The parameter ns gives the saturation density of the CMC on the membrane, and is of order of the inverse area of a single CMC.
From this free energy the equations of motion for the membrane shape, and density of CMC, can be derived. For small deformations of a flat membrane, the membrane shape can be parametrized by the Monge gauge, using a single height field h(r) (figure 1a). The equation of motion for h(r) can be written as [34]
2.3 |
where ξ is some friction coefficient. The long-range hydrodynamic interactions are not described here, both for simplicity, and due to the fact that inside cells the dense cytoskeleton network greatly reduces long-range cytoplasmic flows. The first term on the right-hand side of equation (2.3) gives the forces that act to deform the membrane due to passive mechanisms, such as due to the spontaneous curvature of the CMC, which are therefore extracted from a variation of the free energy (equation (2.1)) with respect to the membrane shape deformation [34]. The elastic forces that act to restore the membrane to its flat shape arise from the membrane's resistance to bending (finite bending modulus κ) and resistance to stretching (positive membrane tension σ).
In equation (2.3), the last term describes an additional, active force that is acting to deform the membrane, wherever the local concentration of CMC is different from its mean value 〈n〉. First, in order to keep the problem as simple as possible, it can be assumed that the local coverage fraction of CMC n(r) can be used as a measure of the local density of cytoskeleton network recruited to the membrane. Second, since the forces produced by the cytoskeleton arise from energy consuming processes, they cannot be derived from the free energy, and are therefore added to the equation of motion for the membrane shape. The direction of the active force depends on the sign of the parameter A: a positive value indicates that the cytoskeleton is pushing outwards, and there is a protrusive force acting on the membrane whenever n(r) > 〈n〉. A negative A indicates a dominant contractile force, pointing into the cell. It is assumed here that the average forces of the cytoskeleton, given by A〈n〉, are balanced by the finite compressibility/stretching of the cell, and are therefore removed from the force balance, leaving only local deviations in the active forces.
Next, the equation of motion for the dynamics of the density of CMC is given by the following conservation equation [7]
2.4 |
where Λ is the mobility of the CMC in the membrane and J is the total current of CMC on the membrane. Note that we assume here that the CMC are not directly propelled on the membrane by the active cytoskeleton-driven forces that they recruit, since these forces are mostly directed normal to the membrane. In our coarse-grained treatment, the normal direction of the local cytoskeletal forces on the membrane arises by averaging the forces of individual actin filaments, for example, which are oriented at various angles with respect to the membrane plane.
It is helpful to list the main currents that arise from this equation of motion [35]: the currents acting to disperse the CMC and prevent their aggregation arise from thermal diffusion (Jdiff) and the resistance of the membrane to the deformation caused by the CMC aggregation (Jdisp):
2.5 |
and
2.6 |
where the diffusion coefficient D = ΛkBT. Both of these currents are negative for a positive slope in the density, which means that the current is away from the high density region, and acts to disperse any aggregation. The current Jdisp (equation (2.6)) arises from the resistance of the membrane to the deformation imposed by the CMC. It is, therefore, independent of the sign of the spontaneous curvature of the CMC (H0) and is proportional to the bending modulus of the membrane.
The currents that act to aggregate the CMC arise from the direct attractive interaction J (Jagg), as well as due to the spontaneous curvature (Jcurv):
2.7 |
and
2.8 |
The first of these currents, Jagg, depends on the strength of the direct attractive interaction J between the CMC. The response of curved CMC to the membrane shape, described by the current Jcurv, is schematically shown in figure 1c: depending on the sign of the spontaneous curvature H0, the current flows towards either maximal or minimal values of the curvature H (figure 1b,c).
To judge the strength of the opposing effects of the different currents, we can compare the dispersion due to thermal diffusion to the aggregating current due to spontaneous curvature (equations (2.5) and (2.8)). Equating these currents, we find a steady-state solution of the form
2.9 |
From this expression, we see that even if the spontaneous radius of curvature of the CMC is of molecular size, , which is much smaller than the radius of membrane curvature, R = 1/H, the distribution of CMC on the membrane can be affected since the bending modulus is large: κ/kBT ∼ 1 − 100, while a/R ∼ 0.1 − 10−3. This analysis demonstrates that curved proteins and lipid domains do respond to the shape of the membrane by aggregating where their spontaneous curvature best fits with the local membrane curvature, and the elastic bending energy is minimized (equations (2.1) and (2.2)). Such effects have been observed in bacteria, where curved membrane proteins aggregate near the poles [36–38] or at concave regions (such as nascent septa) [39,40].
Note that a similar accumulation of curved CMC to matching regions on the membrane arises due to the curvature-dependence of the adsorption of curved molecules (such as membrane proteins) from the cytoplasm to the membrane [41] (figure 1c). This tendency of curved proteins to accumulate in response to the imposed membrane curvature was observed in vitro [42–45] and in living cells [46]. Quantitative comparisons to the in vitro experiments support the use of the continuum theory described above, even on length-scales down to approximately 10 nm, close to the molecular size.
While the CMC respond to imposed membrane deformations, it is not as simple for these curved entities to initiate spontaneous aggregation and shape deformation. The conditions for initiation of phase separation, aggregation of CMC and the consequent formation of curved membrane shapes can be found by performing linear stability analysis of the coupled system (equations (2.1)–(2.4)). From such analysis of passive systems, it was found that the entropic cost prevents the aggregation of CMC in the limit of a flat membrane with small height deformations, unless direct attraction (J) is present [23]. Such attraction between the CMC results in the formation of dense aggregated scaffolds that bend the membrane [47,48]. The curvature effects can aid the aggregation by raising the critical temperature for the initiation of phase separation [23]. Since the aggregate of CMC necessarily involves a curved deformation of the membrane, it is suppressed by membrane tension, which acts to flatten the membrane [49]. All these passive effects have been extensively studied theoretically [50–53], and have also been exposed in experiments. For example, the role of membrane curvature near the phase separation transition was observed in [54,55]. Note that curvature alone was shown to maintain a stable aggregate when large-scale deformations, beyond the regime of small fluctuations, are considered [56].
In the presence of active forces, the deformations are greatly enhanced (equation (2.3)), which cause larger aggregation currents due to the spontaneous curvature of the CMC (equation (2.8)). A recent static calculation has shown the effect of the additional cytoskeletal force in maintaining the aggregation of curved proteins and associated membrane deformation [57]. In the sections below, the coupled systems were investigated for different geometries and combinations of curvatures and forces in the presence of active forces. Linear stability analysis was used to expose the regimes of spontaneous initiation of spatial and dynamic patterns. Nonlinear terms were included to allow us to follow the dynamics beyond the linear regime in some cases, mostly using numerical simulations.
3. Convex proteins coupled to protrusive forces: cellular protrusions
We start with the case of convex CMC, which means the curvature of the membrane at the tips of cellular protrusions (figures 1c,2a), which recruit protrusive forces of the cytoskeleton [34]. Protrusive forces, which push the membrane outwards, are mostly produced at the cell cortex by the polymerization of actin, but can also arise from polymerization of microtubules. Convex CMC (H0 < 0), together with the protrusive force (A > 0, in equation (2.3)), act as a positive feedback (figure 2a): a small membrane shape fluctuation induces a local flow of CMC towards the most protrusive parts of the undulation. This flow causes an increase in n at the protrusive tip, which in turn causes the force of the cytoskeleton to increase there, further pushing that part of the membrane outwards with respect to the surrounding membrane. As the membrane protrudes, more convex CMC flow to the tip, giving rise to a positive feedback. Similarly, a random fluctuation in the density n can initiate this process.
When is this positive feedback strong enough to spontaneously destabilize the uniform density and flat membrane state, and initiate the formation of outwards pointing membrane protrusions? The condition for instability is satisfied above a critical strength of the recruited protrusive force of the cytoskeleton (A, equation (2.3)) and below a critical value of the membrane tension (σ) [23,58]. In the regime of instability, the protrusions will grow fastest at the wavelength for which the system is most unstable. In figure 2b, we plot a typical calculation of the rate of growth of fluctuations at different wavelengths (ω(q)), from the linear stability analysis [34]. At short wavelengths (large q), the bending energy cost is prohibitive while the amount of CMC accumulation at each tip is limited, and the fluctuations quickly disperse and the membrane flattens. This stable regime is indicated by the negative values of the growth rate ω < 0. However, above a certain critical wavelength, the process can become self-sustaining and an initial perturbation grows (ω > 0). A numerical simulation shown in figure 2c shows that periodically spaced protrusions are initiated by this positive feedback process at the wavelength of the most unstable mode predicted by the linear stability analysis (figure 2b).
At longer times, the protrusions, and their associated tip aggregates of convex CMC, may undergo a process of coalescence, as shown using a numerical simulation [35] in figure 2c. This process, where protrusions merge or grow larger at the expense of neighbouring protrusions, is called ‘coarsening’ and is driven by nonlinear terms in equations (2.3) and (2.4). An important feature is that the time-scale of the coarsening process increases dramatically when the positive feedback is weaker and occurs faster when it is stronger. This means that in cells where this mechanism is weak, for example, due to weak actin polymerization, the protrusions are likely to be found at the regular spacing at which they initiate, given by the most unstable mode. In cells that have a strong positive feedback, the protrusions undergo fast coarsening and the cell exhibits a smaller number of larger protrusions. Note that the adhesion of the cell membrane to an external substrate, through membrane-bound adhesion complexes, can also exert a protrusive force that stretches the membrane outwards, similar to the effect of actin polymerization [23,35]. When the adhesion complexes are convex shaped, we can have a positive feedback that is dominated by adhesion-induced protrusive forces, as shown in figure 2c.
The simulations shown in figure 2c,d describe a one-dimensional contour that marks the edge of a flat, two-dimensional cell. For adhering cells this cell edge has a high curvature in the direction that is normal to the plane of the calculation, i.e. where the membrane curves back to form a closed volume. Owing to this high convex curvature, it is natural to assume that the convex CMC are confined along this edge [34], as was done in these simulations (figure 2c,d [35]). When the convex CMC at the rim of the cell recruit the protrusive force of actin polymerization, the result is a ‘fan-shaped’ cell that resembles closely the shapes of lamellipodia structures in cells [35] (figure 2d,e). Recent experiments have found that the leading edge of the lamellipodia indeed involves the presence of curved proteins that recruit actin polymerization [59]. When the curved proteins are convex, and recruit actin polymerization, they drive lamellipodia extension (I. Begemann et al. 2017, private communication). This coupling was also shown to help maintain the highly curved leading edge of the lamellipodia using detailed simulations [60]. When the curved proteins are concave and lead to suppression of actin polymerization, the positive feedback has both the sign of the spontaneous curvature and of the active force reversed (H0 > 0, A < 0), so works to destabilize the leading edge and results in membrane retraction [46].
When this mechanism for initiating cellular protrusions was first investigated theoretically [34], there were no known candidates for convex proteins that also recruit the protrusive forces of the cytoskeleton. However, such components were discovered shortly afterwards. A prime example is the IRSp53, an inverse-BAR (I-BAR) domain protein [61]. While it was already known to be part of a complex that recruits and promotes actin polymerization near the membrane [62,63], its convex shape was identified later [64]. This protein therefore has all the properties required to drive the positive feedback described above, and is indeed implicated in driving the initiation of cellular protrusions [65–68]. Another recently discovered example of convex CMC that recruits actin polymerization and induces cellular protrusions is the Formin FMNL2-Cdc42 complex [69].
Another example where convex CMC couple with the protrusive forces of the cytoskeleton to drive aggregation and protrusion is during the process of HIV budding [58]. The coat proteins of the HIV virus have the convex spontaneous curvature needed to form a closed shell (figure 2f). As they adsorb to the infected cell membrane, they aggregate to form a bud and eventually detach (figure 2f). Under normal conditions it was found that these complexes can recruit actin polymerization, and this enables the aggregation into buds to occur at much lower membrane density of viral proteins compared to the case when the actin recruitment is impaired [58]. Viral budding that is enhanced by hijacking the actin cytoskeleton can therefore occur faster, making the virus more potent. Similar processes seem to occur during the budding process of other retroviruses [70,71].
Whole-cell simulations that describe the shapes of cells, notably during motility, have been developed over recent years using the ‘phase-field’ [72–74] or ‘Cellular Potts Model’ [75–77] techniques. Such works allow to describe the dynamic shape deformations of cells that are driven by the internal forces of actin polymerization and contractility due to molecular motors. However, we are not aware of such simulations that have explicitly included the feedback from the membrane curvature, although one work includes implicitly a positive feedback between the protrusive motion and local curvature [77].
4. Curved proteins on cylindrical membranes: rings, constrictions and fission
Cellular membranes are often in the form of cylinders and tubes. Examples include the tubular shape of bacteria, where the inner fluid membrane is typically cylindrical with hemispherical ends. Inside eukaryote cells, cylindrical tubes are observed as parts of internal organelles, from the golgi to the endoplasmic reticulum (ER), as well as during the process of endocytosis. Such tubes are formed when the membrane, for example, conforms to the shape of the rigid cell wall of the bacteria, or when an adsorbed protein scaffold stabilizes this shape [3,78], or when the membrane is pulled by active forces, such as by molecular motors [79–81].
Tubular invaginations (extending into the cell) can be initiated by the reverse of the mechanism we described in the previous section for the initiation of cellular protrusions (figure 2a), using concave CMC (e.g. of the BAR-domain family), and where the recruited cytoskeleton ends up producing forces directed into the cell [82–85]. It simply amounts to reversing both the sign of the spontaneous curvature of the CMC, H0 > 0, and the force of the cytoskeleton A < 0, in equations (2.3) and (2.4) (or turning figure 2a upside down). Such inwards-directed forces can arise, for example, when the actin polymerization is overwhelmed by contractile forces of myosin-II motors, resulting in a net retraction of the membrane into the cell [86]. Other possibilities include the sideways entrainment of the curved proteins to the treadmilling motion of the actin filaments, flowing backwards from the membrane. This mechanism may play an important role during endocytosis [13,14].
On such cylindrical membrane tubes there can be processes where the CMC undergo an instability and aggregation due to a positive feedback between their spontaneous curvature, the membrane shape and the recruited forces of the cytoskeleton (figure 3a–c). We consider convex (concave) arc-like CMC that adsorb to the inner (outer) side of the membrane tube. The CMC are taken to have cylindrical symmetry, i.e. their density is uniform around the cylinder's circumference. It is found that they can become unstable even in the absence of any direct attraction (J = 0 in equation (2.1)) [88]: if the membrane tube radius, determined by the balance of curvature and tension forces [88], is larger than the spontaneous radius of curvature of the CMC (1/H0), the CMC act to constrict the tube. Such a constriction draws more CMC, which increase the local constriction, and drives a positive feedback. This is in contrast to the case of a flat membrane [23]. Note that such ring-like CMC, oriented along the circumference of the cylinder, are naturally anisotropic [89], and therefore couple more strongly (or even exclusively) to one of the principal curvatures of the cylinder, rather than to the mean curvature [87]: CMC that are convex and adsorbed to the inner side of the tube orient along the cylinder's circumference and couple to the cylinder's radius (figure 3a), while concave CMC (adsorbed to the inner side of the tube) align along the cylinder's axis and couple to axial deformations (figure 3b). In the later case, the positive feedback draws the CMC to the tip of the constriction, similar to the dynamics shown in figure 2a for flat membranes.
The instability involves formation of condensed rings at equal separations along the length of the cylindrical membrane [88] (figure 3c(i),(ii)), corresponding to the most unstable wavelength of the linear stability analysis (figure 2f). As for the case of protrusions, nonlinear effects drive the coarsening of the rings into fewer and thicker rings (figure 3c(iii),(iv)). Since the condensed rings contain more of the CMC, the membrane there bends, either inwards or outwards depending on the relation between the cylinder's natural radius and the spontaneous radius of the CMC. For inwards bending, the condensed rings initiate constrictions of the cylinder, which become more pronounced as the rings grow larger through the coarsening process (figure 3c(iii),(iv)). Numerical simulations have shown this process also on spherical vesicles [90].
In the presence of active forces, the spontaneous initiation of rings can occur more readily, due to the following positive feedbacks [87]: for CMC with a radius of curvature that induces constrictions, the recruitment of contractile forces, for example due to acto-myosin complexes (figure 3d) [91,92], gives such a positive feedback. The combination of curvature and contractile forces produces a robust mechanism for initiation of contractile rings [87]. A similar behaviour will occur if the CMC have the opposite curvatures, adsorb to the outer side of the cylindrical membrane and recruit contractile forces or protrusive forces that are directed inwards (towards the tube axis) [93]. This mechanism seems to play a role during actin-driven fission of cylindrical membrane invaginations [94], for example during endocytosis [95,96].
On a long tube, the instability described above initiates rings at the most unstable wavelength [97]. This phenomenon is indeed observed in in vitro experiments [44,98]. These rings serve to initiate fission of the membrane tubes, at the boundary between the dense CMC ring and the unconstricted membrane [97,99], as was observed in experiments [100]. Note that the instability leading to the formation of constricting rings can then serve to recruit further proteins and cytoskeletal elements that drive the final membrane fission [101]. In bacteria, the condensation of constricting rings (usually of FtsZ proteins) can mark the locations for the recruitment of the cell-wall building machinery [102], which forms the septum that divides the cell or organelle. The FtsZ filaments possess spontaneous curvature [103,104], may induce constrictive forces [105], and therefore both bend the membrane and are affected by its curvature [106]. In mitochondria, such rings serve to recruit the cytoskeleton of the cell, to complete the fission process [107]. In eukaryotes, the initiation of the contractile ring through the process we described may serve as the initial step for the formation of the ring that divides the cell during mitosis and gives rise to the condensation of the contractile forces at the site of the ring formation [108,109].
One interesting feature of this instability is that as the tube grows in length, it first reaches the conditions of instability when an unstable mode has a wavelength that is twice the tube length [87]. This means that the first instability should occur at the mid point along the tube length, making this instability a useful mechanism for dividing membrane tubes, or tubular cells, into two symmetric pieces. This mechanism may have allowed primitive cells to initiate symmetric division above a threshold cell length, which later became supplemented by further mechanisms that ensure the spatial and temporal accuracy of this process.
Note that the formation of a dense scaffold of curved proteins, and also the formation of an actin coat, can act to stabilize membrane tubules by providing a supporting structure that is rather static and rigid. It is, therefore, found that during the initial formation of tubes from the cell membrane the cortical actin network needs to be weakened [110]. Such rigid scaffolds act to inhibit the instability described above, preventing the break-up of the tubes into vesicles. On the other hand, a uniform polymerizing actin coat can exert an inwards pressure on the tube [111] that can drive a pearling instability [93].
5. Positive and negative feedbacks: oscillations and membrane waves
The recruitment of cytoskeletal forces by the curved CMC can give rise to positive feedback and instability, as we saw above, but can also produce a negative feedback. Consider a concave CMC on a flat membrane, that recruits the protrusive force of actin. An accumulation of the CMC will produce a small protrusion, which will drive the concave CMC to the sides where the curvature is more concave (figure 1c). As the CMC flow to the sides, so does the protrusive actin force that it recruits. This process gives rise to a decaying sideways motion (damped waves), which restores the membrane to its flat shape and the CMC to their uniform distribution [34]. While this negative feedback by itself does not spontaneously produce any membrane pattern, it may be a useful mechanism for cells in order to maintain uniformity and prevent aggregation. Such a mechanism is used by bacteria to maintain their straight cylindrical shape, where the equivalent of the protrusive force of the cytoskeleton is the cell-wall building process [40].
More interesting dynamics follow from the coupling between positive and negative feedback mechanisms. The convex CMC that recruit protrusive cytoskeletal forces provide a positive feedback that produces stationary protrusions, as we described above. We call these protrusions ‘stationary’ in the sense that they do not tend to propagate sideways in the plane of the membrane, at least in the linear regime (coarsening due to nonlinear terms can lead to sideways sliding [35]). When coupled to a negative feedback process, the system has a phase diagram with parameter regimes of damped oscillations and regimes of ‘wave instability’. In the wave instability regime, propagating or oscillatory perturbations grow in amplitude (due to the instability) and correspond to waves and oscillations that may be triggered spontaneously. The rate of growth of perturbations is now complex, ω(q) = ω′(q) + iω′′(q), with the imaginary part giving the oscillatory phase and the real part describing the rate of growth (or decay) of the amplitude. We describe examples for three such mechanisms below. Within the cell there are many overlapping feedbacks, so the simple and tractable models we give here serve as examples when few such feedbacks dominate. Other models have been proposed to couple the membrane shape with the actin cytoskeleton into a feedback network that produces waves [112], while there are also models for these waves that include the active forces of the cytoskeleton but do not involve the curvature of the membrane [113,114]. Recent experiments find propagating cellular waves involving all the ingredients of the theoretical model: membrane deformations and actin polymerization that is recruited by curved membrane proteins [115]. Note that other curved membrane proteins and lipids, which are not directly related to the mechanism driving the membrane waves, are affected by the propagating membrane undulations that can ‘sweep’ them due to their intrinsic curvature [33].
(a). Waves driven by myosin contractility
When the convex CMC recruit polymerization of cortical actin, the actin filaments provide a substrate for a host of actin-binding proteins. One such protein is myosin-II, which acts to pull anti-parallel actin filaments and transmit a force that pulls the membrane into the cell [86]. It is assumed that the myosin contractility acts, on average, to pull the membrane perpendicularly into the cell, since the cortical actin network is assumed to be locally uniform on the membrane. The active term in equation (2.3) becomes [116]
5.1 |
where A* is the strength of myosin-II contractility, and m is the local concentration of myosin at the cell cortex. The dynamics of the myosin field are described by the following additional equation of motion [116]
5.2 |
describing the adsorption/desorption kinetics of the myosin motors on the actin network (which is given by the local CMC concentration n).
When the contractile force overwhelms the protrusive force of the actin polymerization, the instability can change from production of stationary protrusions to propagating waves [116]. The dynamical process is as follows: convex CMC recruit protrusive actin forces and this results in their aggregation at the protrusive tip (figure 4a). Myosin-II builds up on the actin and reverses the motion of the membrane, such that it retracts and forms a local dip. The convex CMC flow and accumulate at the shoulders of the dip, where the process repeats itself (figure 4b).
This process gives rise to propagating waves with an almost linear dispersion relation: ω′′(q)∝qc (figure 4c), which correspond to waves with a well-defined propagation speed c, which is roughly independent of wavelength for large wavelengths (acoustic-like). The speed of propagation turns out to be largely independent of the rate of actin polymerization, while it strongly depends on the strength of myosin-II contractility A* [116,117], approximately as: . Within the wave, the actin concentration is at the leading front of the wave, while the myosin concentration is trailing, and they are oscillating out-of-phase with respect to each other (figure 4d).
This model can describe the spatio-temporal correlations of observed cellular membrane waves [118]. Direct experimental evidence for the role of myosin-II in membrane waves was reported in [119]. However, the role of curved membrane proteins was not reported in these studies. Within the model the waves are predicted to be excitable using mechanical perturbations of the membrane (figure 4d) and the actin cortex [117], which can serve to probe the frequency spectrum of the waves through the frequency-dependence of the amplitude of the excited waves. These predictions await future experiments [120].
(b). Waves driven by combining convex and concave curvatures
When the cell membrane has CMC of both curvature signs, and both recruit protrusive forces of the cytoskeleton (figure 5a,b), there can be a regime where wave instability occurs [41]. The key property to ensure the appearance of the wave instability is found to be that the convex CMC, which give the positive feedback, are recruited faster than the concave CMC, which give the negative feedback. The faster recruitment, through larger diffusion coefficient or higher adsorption rate from the cytoplasm, ensures that the positive feedback is maintained and not damped by the negative feedback. This is similar to the model with the myosin contractility described above, where the myosin (negative feedback) appears after the actin polymerization (positive feedback). An example of a feedback scheme for this model is shown in figure 5c [41].
The waves are found to exist above a minimal value of the actin polymerization force, and above this threshold value the waves' velocity increases with increasing actin polymerization force. Within the waves, the concave and convex CMC are displaced with respect to each other, as each follows the different curved region of the membrane undulation (figure 5d).
This model was proposed to explain the phenomenon of circular dorsal ruffles (CDR) [121], where some ingredients of this model exist: proteins of both curvature signs are localized in the waves [41,122], together with actin polymerization. In addition, myosin-II contractility was shown not to play a crucial role for this type of membrane waves [41]. This model offers an explanation for the observed displacement between the location of the concave proteins and the actin within the propagating CDR [122], as arising from the curved proteins following the undulations of the wave (figure 5d). Increasing membrane tension is predicted to diminish the amplitude of the waves, while leaving the wave velocity largely unaffected [41], in agreement with recent observations of membrane waves [119].
(c). Oscillations driven by a mechano-chemical negative feedback
Finally, another possible negative feedback that can be coupled to the positive feedback of the convex CMC and cytoskeleton protrusive forces (or concave CMC with inwards-directed cytoskeletal forces), is a biochemical negative feedback [123]. The negative feedback can arise due to a large variety of biochemical interactions within the cell. One such biochemical feedback is the influx of calcium ions into the cell through the membrane (figure 6). This influx, as well as the rate of outflux, can depend on the local concentration of membrane proteins, which affect the functioning of calcium channels and pumps [125,126]. The calcium influx can also depend on the shape deformation of the membrane, through stretch-activated channels [124]. Therefore, both the aggregation of the CMC and the protrusive force due to actin polymerization can induce higher overall influx of calcium. Higher cellular concentration of calcium ions in turn triggers an inhibition of the protrusive force of actin polymerization, either by activating actin-severing and capping proteins, or by activating myosin-II contractility.
The overall feedback scheme for this model is shown in figure 6, where the calcium is shown to inhibit the activity of the CMC or the actin polymerization force that pushes the membrane. The result of analysing this model is a phase diagram, where the oscillatory phase appears only below a threshold of actin polymerization activity. Oscillations and waves appear above a threshold of the calcium-driven negative feedback, i.e. strong calcium inhibition of the protrusive actin force, and a strong effect of the CMC and the actin on the calcium influx. Within the oscillatory regime, a higher actin protrusive force lowers the oscillation frequency, while a higher calcium-driven feedback increases it.
The predicted oscillations arising from this model may explain the shape fluctuations (i.e. twitching) of dendritic spines and filopodia [127,128]. When the activity of actin polymerization was decreased in this system through the addition of cytochalasin-D, the observed frequency of spontaneous fluctuations increased [129], which is in qualitative agreement with the model predictions. Another example for oscillations that may follow this model occurs in migrating cells [130], where calcium oscillations were found to be triggered at the leading edge, where the actin activity is localized and dependent on the functioning of calcium channels. Furthermore, the frequency of oscillations is observed to decrease with a decrease in the calcium concentration, as our model predicts (decrease in the calcium-driven feedback). Finally, recent experiments have linked membrane shape oscillations with actin polymerization, curved membrane proteins and calcium [131], therefore identifying all the key ingredients contained in the theoretical model.
6. Discussion
How cells determine their shapes, whether making stable (relatively static) or dynamic structures, remains an open puzzle. It has become clear over recent decades that a large number of proteins are responsible for shaping the cell membrane, interacting to form dynamic supra-molecular complexes. This complexity makes it difficult to unravel, and to extract the basic mechanisms. Nevertheless, the cell has to exert forces on the membrane in order to deform it, and needs to have ways to control these forces spatially and temporally. Through evolution, cells make use of every possible feedback mechanism in order to achieve this control. What we have shown here is that a most useful class of such feedbacks involves coupling curved membrane complexes, such as curved membrane proteins, with the active forces of the cytoskeleton. The curved component of this coupled system is a natural ingredient that allows it to guide components according to the shape of the membrane, which is the desired product. By coupling to the strong active forces produced by the cytoskeleton, the dynamics of the membrane proteins and the associated deformation of the membrane occur in highly non-equilibrium conditions. This means that structures can form in conditions where they would not form in thermodynamic equilibrium. This allows the cell to have control of when and where these structures appear. Indeed, the coupling between curved proteins, which bend and sense curvature, and the cytoskeleton, has been found to occur in a growing number of cellular processes.
Future challenges for this field include the ability to explore these complex feedbacks using well controlled in vitro experiments, where both the membrane and the cytoskeleton are reconstituted [132]. On the theory side, there remain the open challenges of exploring such coupled systems with more complex and realistic components, as well as beyond the linear regime, where large membrane deformations occur. These systems provide examples of non-equilibrium phase transitions and pattern formation, which are processes for which our current physics understanding is lacking. Studying them therefore enriches both our understanding of biology, and also expands the scope of physics.
Acknowledgments
The author is the incumbent of the Lee and William Abramowitz Professorial Chair of Biophysics. This research is made possible, in part, by the generosity of the Harold Perlman family.
Data accessibility
This article has no additional data.
Competing interests
I declare I have no competing interests.
Funding
No funding has been received for this article.
References
- 1.Jarsch IK, Daste F, Gallop JL. 2016. Membrane curvature in cell biology: an integration of molecular mechanisms. J. Cell. Biol. 214, 375–387. ( 10.1083/jcb.201604003) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 2.McMahon HT, Gallop JL. 2005. Membrane curvature and mechanisms of dynamic cell membrane remodelling. Nature 438, 590–596. ( 10.1038/nature04396) [DOI] [PubMed] [Google Scholar]
- 3.McMahon HT, Boucrot E. 2015. Membrane curvature at a glance. J. Cell. Sci. 128, 1065–1070. ( 10.1242/jcs.114454) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4.Kozlov MM, Weissenhorn W, Bassereau P. 2016. Membrane remodeling: theoretical principles, structures of protein scaffolds and forces involved. In From molecules to living organisms: an interplay between Biology and Physics: Lecture Notes of the Les Houches School of Physics, July 2014, vol. 102 (eds E Pebay-Peyroula, H Nury, F Pacy, RWH Ruigrok, C Ziegler, LF Cugliandolo), p. 287. Oxford, UK: Oxford University Press ( 10.1093/acprof:oso/9780198752950.003.0010) [DOI] [Google Scholar]
- 5.Zimmerberg J, Kozlov MM. 2006. How proteins produce cellular membrane curvature. Nat. Rev. Mol. Cell. Biol. 7, 9–19. ( 10.1038/nrm1784) [DOI] [PubMed] [Google Scholar]
- 6.Ramaswamy S, Toner J, Prost J. 1999. Nonequilibrium noise and instabilities in membranes with active pumps. Pramana J. Phys. 53, 237–242. ( 10.1007/s12043-999-0152-2) [DOI] [Google Scholar]
- 7.Ramaswamy S, Toner J, Prost J. 2000. Nonequilibrium fluctuations, travelling waves, and instabilities in active membranes. Phys. Rev. Lett. 84, 3494–3497. ( 10.1103/PhysRevLett.84.3494) [DOI] [PubMed] [Google Scholar]
- 8.Gov N. 2004. Membrane undulations driven by force fluctuations of active proteins. Phys. Rev. Lett. 93, 268104 ( 10.1103/PhysRevLett.93.268104) [DOI] [PubMed] [Google Scholar]
- 9.Kozlov MM, Campelo F, Liska N, Chernomordik LV, Marrink SJ, McMahon HT. 2014. Mechanisms shaping cell membranes. Curr. Opin. Cell. Biol. 29, 53–60. ( 10.1016/j.ceb.2014.03.006) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 10.Weinberg J, Drubin DG. 2012. Clathrin-mediated endocytosis in budding yeast. Trends. Cell. Biol. 22, 1–13. ( 10.1016/j.tcb.2011.09.001) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 11.Dawson JC, Legg JA, Machesky LM. 2006. Bar domain proteins: a role in tubulation, scission and actin assembly in clathrin-mediated endocytosis. Trends Cell Biol. 16, 493–498. ( 10.1016/j.tcb.2006.08.004) [DOI] [PubMed] [Google Scholar]
- 12.Kaksonen M, Toret CP, Drubin DG. 2006. Harnessing actin dynamics for clathrin-mediated endocytosis. Nat. Rev. Mol. Cell. Biol. 7, 404–414. ( 10.1038/nrm1940) [DOI] [PubMed] [Google Scholar]
- 13.Basquin C. et al. 2015. Membrane protrusion powers clathrin-independent endocytosis of interleukin-2 receptor. EMBO. J. 34, 2147–2161. ( 10.15252/embj.201490788) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14.Liu J, Sun Y, Oster GF, Drubin DG. 2010. Mechanochemical crosstalk during endocytic vesicle formation. Curr. Opin. Cell. Biol. 22, 36–43. ( 10.1016/j.ceb.2009.11.009) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 15.Baumgart T, Capraro BR, Zhu C, Das SL. 2011. Thermodynamics and mechanics of membrane curvature generation and sensing by proteins and lipids. Annu. Rev. Phys. Chem. 62, 483–506. ( 10.1146/annurev.physchem.012809.103450) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.Gallop JL, Jao CC, Kent HM, Butler PJG, Evans PR, Langen R, McMahon HT. 2006. Mechanism of endophilin N-BAR domain-mediated membrane curvature. EMBO. J. 25, 2898–2910. ( 10.1038/sj.emboj.7601174) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17.Mim C, Unger VM. 2012. Membrane curvature and its generation by BAR proteins. Trends. Biochem. Sci. 37, 526–533. ( 10.1016/j.tibs.2012.09.001) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18.Simunovic M, Voth GA, Callan-Jones A, Bassereau P. 2015. When physics takes over: BAR proteins and membrane curvature. Trends. Cell. Biol. 25, 780–792. ( 10.1016/j.tcb.2015.09.005) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 19.Liu AP, Richmond DL, Maibaum L, Pronk S, Geissler PL, Fletcher DA. 2008. Membrane-induced bundling of actin filaments. Nat. Phys. 4, 789–793. ( 10.1038/nphys1071) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 20.Suetsugu S, Kurisu S, Takenawa T. 2014. Dynamic shaping of cellular membranes by phospholipids and membrane-deforming proteins. Physiol. Rev. 94, 1219–1248. ( 10.1152/physrev.00040.2013) [DOI] [PubMed] [Google Scholar]
- 21.Carlsson AE. 2018. Membrane bending by actin polymerization. Curr. Opin. Cell Biol. 50, 1–7. ( 10.1016/j.ceb.2017.11.007) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22.Helfrich W. 1974. Blocked lipid exchange in bilayers and its possible influence on the shape of vesicles. Z. Naturforsch. C 29, 510–515. [DOI] [PubMed] [Google Scholar]
- 23.Veksler A, Gov NS. 2007. Phase transitions of the coupled membrane-cytoskeleton modify cellular shape. Biophys. J. 93, 3798–3810. ( 10.1529/biophysj.107.113282) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 24.Walani N, Torres J, Agrawal A. 2014. Anisotropic spontaneous curvatures in lipid membranes. Phys. Rev. E 89, 062715 ( 10.1103/PhysRevE.89.062715) [DOI] [PubMed] [Google Scholar]
- 25.Kralj-Iglič V, Heinrich V, Svetina S, Žekš B. 1999. Free energy of closed membrane with anisotropic inclusions. Eur. Phys. J. B-Condens. Matter Complex Syst. 10, 5–8. ( 10.1007/s100510050822) [DOI] [Google Scholar]
- 26.Iglič A, Kralj-Iglič V, Božič B, Bobrowska-Hägerstrand M, Isomaa B, Hägerstrand H. 2000. Torocyte shapes of red blood cell daughter vesicles. Bioelectrochemistry 52, 203–211. ( 10.1016/S0302-4598(00)00103-3) [DOI] [PubMed] [Google Scholar]
- 27.Fošnaric M, Bohinc K, Gauger DR, Iglic A, Kralj-Iglic V, May S. 2005. The influence of anisotropic membrane inclusions on curvature elastic properties of lipid membranes. J. Chem. Inf. Model. 45, 1652–1661. ( 10.1021/ci050171t) [DOI] [PubMed] [Google Scholar]
- 28.Schweitzer Y, Kozlov MM. 2015. Membrane-mediated interaction between strongly anisotropic protein scaffolds. PLoS. Comput. Biol. 11, e1004054 ( 10.1371/journal.pcbi.1004054) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 29.Kralj-Iglič V, Babnik B, Gauger DR, May S, Iglič A. 2006. Quadrupolar ordering of phospholipid molecules in narrow necks of phospholipid vesicles. J. Stat. Phys. 125, 727–752. ( 10.1007/s10955-006-9051-9) [DOI] [Google Scholar]
- 30.Gómez-Llobregat J, Elías-Wolff F, Lindén M. 2016. Anisotropic membrane curvature sensing by amphipathic peptides. Biophys. J. 110, 197–204. ( 10.1016/j.bpj.2015.11.3512) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 31.Mesarec L, Góźdź W, Iglič VK, Kralj S, Iglič A. 2016. Closed membrane shapes with attached BAR domains subject to external force of actin filaments. Colloids Surf. B: Biointerfaces 141, 132–140. ( 10.1016/j.colsurfb.2016.01.010) [DOI] [PubMed] [Google Scholar]
- 32.Hassinger JE, Oster G, Drubin DG, Rangamani P. 2017. Design principles for robust vesiculation in clathrin-mediated endocytosis. Proc. Natl Acad. Sci. USA 114, E1118–E1127. ( 10.1073/pnas.1617705114) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 33.Shlomovitz R, Gov N. 2008. Curved inclusions surf membrane waves. EPL (Europhys. Lett.) 84, 58008 ( 10.1209/0295-5075/84/58008) [DOI] [Google Scholar]
- 34.Gov NS, Gopinathan A. 2006. Dynamics of membranes driven by actin polymerization. Biophys. J. 90, 454–469. ( 10.1529/biophysj.105.062224) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 35.Kabaso D, Shlomovitz R, Schloen K, Stradal T, Gov NS. 2011. Theoretical model for cellular shapes driven by protrusive and adhesive forces. PLoS. Comput. Biol. 7, e1001127 ( 10.1371/journal.pcbi.1001127) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 36.Huang KC, Mukhopadhyay R, Wingreen NS. 2006. A curvature-mediated mechanism for localization of lipids to bacterial poles. PLoS. Comput. Biol. 2, e151 ( 10.1371/journal.pcbi.0020151) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 37.Ramamurthi KS, Lecuyer S, Stone HA, Losick R. 2009. Geometric cue for protein localization in a bacterium. Science 323, 1354–1357. ( 10.1126/science.1169218) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 38.Rudner DZ, Losick R. 2010. Protein subcellular localization in bacteria. Cold. Spring. Harb. Perspect. Biol. 2, a000307 ( 10.1101/cshperspect.a000307) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 39.Ramamurthi KS, Losick R. 2009. Negative membrane curvature as a cue for subcellular localization of a bacterial protein. Proc. Natl Acad. Sci. USA 106, 13 541–13 545. ( 10.1073/pnas.0906851106) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 40.Ursell TS, Nguyen J, Monds RD, Colavin A, Billings G, Ouzounov N, Gitai Z, Shaevitz JW, Huang KC. 2014. Rod-like bacterial shape is maintained by feedback between cell curvature and cytoskeletal localization. Proc. Natl Acad. Sci. USA 111, E1025–E1034. ( 10.1073/pnas.1317174111) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 41.Peleg B, Disanza A, Scita G, Gov N. 2011. Propagating cell-membrane waves driven by curved activators of actin polymerization. PLoS ONE 6, e18635 ( 10.1371/journal.pone.0018635) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 42.Ambroggio E, Sorre B, Bassereau P, Goud B, Manneville J-B, Antonny B. 2010. ArfGAP1 generates an Arf1 gradient on continuous lipid membranes displaying flat and curved regions. EMBO. J. 29, 292–303.( 10.1038/emboj.2009.341) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 43.Sorre B, Callan-Jones A, Manzi J, Goud B, Prost J, Bassereau P, Roux A. 2012. Nature of curvature coupling of amphiphysin with membranes depends on its bound density. Proc. Natl Acad. Sci. USA 109, 173–178. ( 10.1073/pnas.1103594108) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 44.Aimon S, Callan-Jones A, Berthaud A, Pinot M, Toombes GE, Bassereau P. 2014. Membrane shape modulates transmembrane protein distribution. Dev. Cell. 28, 212–218. ( 10.1016/j.devcel.2013.12.012) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 45.Prévost C, Zhao H, Manzi J, Lemichez E, Lappalainen P, Callan-Jones A, Bassereau P. 2015. IRSp53 senses negative membrane curvature and phase separates along membrane tubules. Nat. Commun. 6, 8529 ( 10.1038/ncomms9529) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 46.Galic M, Jeong S, Tsai F-C, Joubert L-M, Wu YI, Hahn KM, Cui Y, Meyer T. 2012. External push and internal pull forces recruit curvature sensing N-BAR domain proteins to the plasma membrane. Nat. Cell. Biol. 14, 874–881. ( 10.1038/ncb2533) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 47.Sens P, Johannes L, Bassereau P. 2008. Biophysical approaches to protein-induced membrane deformations in trafficking. Curr. Opin. Cell. Biol. 20, 476–482. ( 10.1016/j.ceb.2008.04.004) [DOI] [PubMed] [Google Scholar]
- 48.Terasaki M. et al. 2013. Stacked endoplasmic reticulum sheets are connected by helicoidal membrane motifs. Cell 154, 285–296. ( 10.1016/j.cell.2013.06.031) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 49.Shi Z, Baumgart T. 2015. Membrane tension and peripheral protein density mediate membrane shape transitions. Nat. Commun. 6, 5974 ( 10.1038/ncomms6974) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 50.Markin V. 1981. Lateral organization of membranes and cell shapes. Biophys. J. 36, 1–19. ( 10.1016/S0006-3495(81)84713-3) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 51.Leibler S. 1986. Curvature instability in membranes. J. Phys. 47, 507–516. ( 10.1051/jphys:01986004703050700) [DOI] [Google Scholar]
- 52.Taniguchi T, Kawasaki K, Andelman D, Kawakatsu T. 1994. Phase transitions and shapes of two component membranes and vesicles II: weak segregation limit. J. Phys. II 4, 1333–1362. ( 10.1051/jp2:1994203) [DOI] [Google Scholar]
- 53.Kralj-Iglič V, Svetina S, Žekž B. 1996. Shapes of bilayer vesicles with membrane embedded molecules. Eur. Biophys. J. 24, 311–321. ( 10.1007/BF00180372) [DOI] [PubMed] [Google Scholar]
- 54.Roux A, Cuvelier D, Nassoy P, Prost J, Bassereau P, Goud B. 2005. Role of curvature and phase transition in lipid sorting and fission of membrane tubules. EMBO. J. 24, 1537–1545. ( 10.1038/sj.emboj.7600631) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 55.Sorre B, Callan-Jones A, Manneville J-B, Nassoy P, Joanny J-F, Prost J, Goud B, Bassereau P. 2009. Curvature-driven lipid sorting needs proximity to a demixing point and is aided by proteins. Proc. Natl Acad. Sci. USA 106, 5622–5626. ( 10.1073/pnas.0811243106) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 56.Reynwar BJ, Illya G, Harmandaris VA, Mueller MM, Kremer K, Deserno M. 2007. Aggregation and vesiculation of membrane proteins by curvature-mediated interactions. Nature 447, 461–464. ( 10.1038/nature05840) [DOI] [PubMed] [Google Scholar]
- 57.Mesarec L, Góźdź W, Kralj S, Fošnarič M, Penič S, Kralj-Iglič V, Iglič A. 2017. On the role of external force of actin filaments in the formation of tubular protrusions of closed membrane shapes with anisotropic membrane components. Eur. Biophys. J. 46, 705–718. ( 10.1007/s00249-017-1212-z) [DOI] [PubMed] [Google Scholar]
- 58.Gladnikoff M, Shimoni E, Gov NS, Rousso I. 2009. Retroviral assembly and budding occur through an actin-driven mechanism. Biophys. J. 97, 2419–2428. ( 10.1016/j.bpj.2009.08.016) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 59.Tsujita K, Takenawa T, Itoh T. 2015. Feedback regulation between plasma membrane tension and membrane-bending proteins organizes cell polarity during leading edge formation. Nat. Cell. Biol. 17, 749–758. ( 10.1038/ncb3162) [DOI] [PubMed] [Google Scholar]
- 60.Schmeiser C, Winkler C. 2015. The flatness of lamellipodia explained by the interaction between actin dynamics and membrane deformation. J. Theor. Biol. 380, 144–155. ( 10.1016/j.jtbi.2015.05.010) [DOI] [PubMed] [Google Scholar]
- 61.Scita G, Confalonieri S, Lappalainen P, Suetsugu S. 2008. IRSp53: crossing the road of membrane and actin dynamics in the formation of membrane protrusions. Trends. Cell. Biol. 18, 52–60. ( 10.1016/j.tcb.2007.12.002) [DOI] [PubMed] [Google Scholar]
- 62.Miki H, Yamaguchi H, Suetsugu S, Takenawa T. 2000. IRSp53 is an essential intermediate between Rac and WAVE in the regulation of membrane ruffling. Nature 408, 732–735. ( 10.1038/35047107) [DOI] [PubMed] [Google Scholar]
- 63.Krugmann S, Jordens I, Gevaert K, Driessens M, Vandekerckhove J, Hall A. 2001. Cdc42 induces filopodia by promoting the formation of an IRSp53: Mena complex. Curr. Biol. 11, 1645–1655. ( 10.1016/S0960-9822(01)00506-1) [DOI] [PubMed] [Google Scholar]
- 64.Mattila PK, Pykäläinen A, Saarikangas J, Paavilainen VO, Vihinen H, Jokitalo E, Lappalainen P. 2007. Missing-in-metastasis and IRSp53 deform PI(4, 5)P2-rich membranes by an inverse BAR domain–like mechanism. J. Cell. Biol. 176, 953–964. ( 10.1083/jcb.200609176) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 65.Millard TH, Bompard G, Heung MY, Dafforn TR, Scott DJ, Machesky LM, Fütterer K. 2005. Structural basis of filopodia formation induced by the IRSp53/mim homology domain of human IRSp53. EMBO. J. 24, 240–250. ( 10.1038/sj.emboj.7600535) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 66.Disanza A. et al. 2006. Regulation of cell shape by Cdc42 is mediated by the synergic actin-bundling activity of the Eps8-IRSp53 complex. Nat. Cell. Biol. 8, 1337–1347. ( 10.1038/ncb1502) [DOI] [PubMed] [Google Scholar]
- 67.Vaggi F, Disanza A, Milanesi F, Di Fiore PP, Menna E, Matteoli M, Gov NS, Scita G, Ciliberto A. 2011. The Eps8/IRSp53/VASP network differentially controls actin capping and bundling in filopodia formation. PLoS. Comput. Biol. 7, e1002088 ( 10.1371/journal.pcbi.1002088) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 68.Disanza A. et al. 2013. CDC42 switches IRSp53 from inhibition of actin growth to elongation by clustering of VASP. EMBO. J. 32, 2735–2750. ( 10.1038/emboj.2013.208) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 69.Kühn S, Erdmann C, Kage F, Block J, Schwenkmezger L, Steffen A, Rottner K, Geyer M. 2015. The structure of FMNL2–Cdc42 yields insights into the mechanism of lamellipodia and filopodia formation. Nat. Commun. 6, 7088 ( 10.1038/ncomms8088) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 70.Goff SP. 2007. Host factors exploited by retroviruses. Nat. Rev. Microbiol. 5, 253–263. ( 10.1038/nrmicro1541) [DOI] [PubMed] [Google Scholar]
- 71.Votteler J, Sundquist WI. 2013. Virus budding and the ESCRT pathway. Cell. Host. Microbe. 14, 232–241. ( 10.1016/j.chom.2013.08.012) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 72.Ziebert F, Swaminathan S, Aranson IS. 2011. Model for self-polarization and motility of keratocyte fragments. J. R. Soc. Interface 9, 1084–1092. ( 10.1098/rsif.2011.0433) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 73.Shao D, Levine H, Rappel W-J. 2012. Coupling actin flow, adhesion, and morphology in a computational cell motility model. Proc. Natl Acad. Sci. USA 109, 6851–6856. ( 10.1073/pnas.1203252109) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 74.Marth W, Voigt A. 2014. Signaling networks and cell motility: a computational approach using a phase field description. J. Math. Biol. 69, 91–112. [DOI] [PubMed] [Google Scholar]
- 75.Graner F, Glazier JA. 1992. Simulation of biological cell sorting using a two-dimensional extended potts model. Phys. Rev. Lett. 69, 2013 ( 10.1103/PhysRevLett.69.2013) [DOI] [PubMed] [Google Scholar]
- 76.Marée AF, Grieneisen VA, Edelstein-Keshet L. 2012. How cells integrate complex stimuli: the effect of feedback from phosphoinositides and cell shape on cell polarization and motility. PLoS. Comput. Biol. 8, e1002402 ( 10.1371/journal.pcbi.1002402) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 77.Niculescu I, Textor J, De Boer RJ. 2015. Crawling and gliding: a computational model for shape-driven cell migration. PLoS. Comput. Biol. 11, e1004280 ( 10.1371/journal.pcbi.1004280) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 78.Bobrovska N, Góźdź W, Kralj-Iglič V, Iglič A. 2013. On the role of anisotropy of membrane components in formation and stabilization of tubular structures in multicomponent membranes. PLoS ONE 8, e73941 ( 10.1371/journal.pone.0073941) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 79.Roux A, Cappello G, Cartaud J, Prost J, Goud B, Bassereau P. 2002. A minimal system allowing tubulation with molecular motors pulling on giant liposomes. Proc. Natl Acad. Sci. USA 99, 5394–5399. ( 10.1073/pnas.082107299) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 80.Koster G, VanDuijn M, Hofs B, Dogterom M. 2003. Membrane tube formation from giant vesicles by dynamic association of motor proteins. Proc. Natl Acad. Sci. USA 100, 15 583–15 588. ( 10.1073/pnas.2531786100) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 81.Gov NS. 2009. Phases of membrane tubules pulled by molecular motors. Soft Matter 5, 2431–2437. ( 10.1039/B817341A) [DOI] [Google Scholar]
- 82.Ferguson S. et al. 2009. Coordinated actions of actin and BAR proteins upstream of dynamin at endocytic clathrin-coated pits. Dev. Cell. 17, 811–822. ( 10.1016/j.devcel.2009.11.005) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 83.Wang X, Galletta BJ, Cooper JA, Carlsson AE. 2016. Actin-regulator feedback interactions during endocytosis. Biophys. J. 110, 1430–1443. ( 10.1016/j.bpj.2016.02.018) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 84.Picco A, Kukulski W, Manenschijn HE, Specht T, Briggs JA, Kaksonen M. 2017. The contributions of the actin machinery to endocytic membrane bending and vesicle formation. bioRxiv 172072. [Google Scholar]
- 85.Daste F. et al. 2017. Control of actin polymerization via the coincidence of phosphoinositides and high membrane curvature. J. Cell Biol. ( 10.1083/jcb.201704061) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 86.Medeiros NA, Burnette DT, Forscher P. 2006. Myosin II functions in actin-bundle turnover in neuronal growth cones. Nat. Cell. Biol. 8, 216–226. ( 10.1038/ncb1367) [DOI] [PubMed] [Google Scholar]
- 87.Shlomovitz R, Gov NS. 2008. Physical model of contractile ring initiation in dividing cells. Biophys. J. 94, 1155–1168. ( 10.1529/biophysj.107.111351) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 88.Shlomovitz R, Gov N. 2009. Membrane-mediated interactions drive the condensation and coalescence of FtsZ rings. Phys. Biol. 6, 046017 ( 10.1088/1478-3975/6/4/046017) [DOI] [PubMed] [Google Scholar]
- 89.Kabaso D, Bobrovska N, Góźdź W, Gov N, Kralj-Iglič V, Veranič P, Iglič A. 2012. On the role of membrane anisotropy and BAR proteins in the stability of tubular membrane structures. J. Biomech. 45, 231–238. ( 10.1016/j.jbiomech.2011.10.039) [DOI] [PubMed] [Google Scholar]
- 90.Vahid A, Šarić A, Idema T. 2017. Curvature variation controls particle aggregation on fluid vesicles. Soft. Matter. 13, 4924–4930. ( 10.1039/C7SM00433H) [DOI] [PubMed] [Google Scholar]
- 91.Vavylonis D, Wu J-Q, Hao S, O'Shaughnessy B, Pollard TD. 2008. Assembly mechanism of the contractile ring for cytokinesis by fission yeast. Science 319, 97–100. ( 10.1126/science.1151086) [DOI] [PubMed] [Google Scholar]
- 92.Pollard TD. 2010. Mechanics of cytokinesis in eukaryotes. Curr. Opin. Cell. Biol. 22, 50–56. ( 10.1016/j.ceb.2009.11.010) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 93.Jelerčič U, Gov NS. 2015. Pearling instability of membrane tubes driven by curved proteins and actin polymerization. Phys. Biol. 12, 066022 ( 10.1088/1478-3975/12/6/066022) [DOI] [PubMed] [Google Scholar]
- 94.Römer W. et al. 2007. Shiga toxin induces tubular membrane invaginations for its uptake into cells. Nature 450, 670–675. ( 10.1038/nature05996) [DOI] [PubMed] [Google Scholar]
- 95.Römer W. et al. 2010. Actin dynamics drive membrane reorganization and scission in clathrin-independent endocytosis. Cell 140, 540–553. ( 10.1016/j.cell.2010.01.010) [DOI] [PubMed] [Google Scholar]
- 96.Renard H-F. et al. 2015. Endophilin-A2 functions in membrane scission in clathrin-independent endocytosis. Nature 517, 493–496. ( 10.1038/nature14064) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 97.Shlomovitz R, Gov N, Roux A. 2011. Membrane-mediated interactions and the dynamics of dynamin oligomers on membrane tubes. New. J. Phys. 13, 065008 ( 10.1088/1367-2630/13/6/065008) [DOI] [Google Scholar]
- 98.Osawa M, Anderson DE, Erickson HP. 2008. Reconstitution of contractile FtsZ rings in liposomes. Science 320, 792–794. ( 10.1126/science.1154520) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 99.Allain J-M, Storm C, Roux A, Amar MB, Joanny J-F. 2004. Fission of a multiphase membrane tube. Phys. Rev. Lett. 93, 158104 ( 10.1103/PhysRevLett.93.158104) [DOI] [PubMed] [Google Scholar]
- 100.Morlot S. et al. 2012. Membrane shape at the edge of the dynamin helix sets location and duration of the fission reaction. Cell 151, 619–629. ( 10.1016/j.cell.2012.09.017) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 101.Daumke O, Roux A, Haucke V. 2014. BAR domain scaffolds in dynamin-mediated membrane fission. Cell 156, 882–892. ( 10.1016/j.cell.2014.02.017) [DOI] [PubMed] [Google Scholar]
- 102.Meier EL, Goley ED. 2014. Form and function of the bacterial cytokinetic ring. Curr. Opin. Cell. Biol. 26, 19–27. ( 10.1016/j.ceb.2013.08.006) [DOI] [PubMed] [Google Scholar]
- 103.Paez A, Tarazona P, Mateos-Gil P, Vélez M. 2009. Self-organization of curved living polymers: FtsZ protein filaments. Soft Matter 5, 2625–2637. ( 10.1039/B902935D) [DOI] [Google Scholar]
- 104.de Prado Salas PG, Hörger I, Martín-García F, Mendieta J, Alonso Á, Encinar M, Gómez-Puertas P, Vélez M, Tarazona P. 2014. Torsion and curvature of FtsZ filaments. Soft. Matter. 10, 1977–1986. ( 10.1039/c3sm52516c) [DOI] [PubMed] [Google Scholar]
- 105.Erickson HP, Anderson DE, Osawa M. 2010. FtsZ in bacterial cytokinesis: cytoskeleton and force generator all in one. Microbiol. Mol. Biol. Rev. 74, 504–528. ( 10.1128/MMBR.00021-10) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 106.Fischer-Friedrich E, Friedrich BM, Gov NS. 2012. Ftsz rings and helices: physical mechanisms for the dynamic alignment of biopolymers in rod-shaped bacteria. Phys. Biol. 9, 016009 ( 10.1088/1478-3975/9/1/016009) [DOI] [PubMed] [Google Scholar]
- 107.Margolin W. 2005. FtsZ and the division of prokaryotic cells and organelles. Nat. Rev. Mol. Cell. Biol. 6, 862–871. ( 10.1038/nrm1745) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 108.Pelham RJ Jr, Chang F. 2002. Actin dynamics in the contractile ring during cytokinesis in fission yeast. Nature 419, 82–86. ( 10.1038/nature00999) [DOI] [PubMed] [Google Scholar]
- 109.Turlier H, Audoly B, Prost J, Joanny J-F. 2014. Furrow constriction in animal cell cytokinesis. Biophys. J. 106, 114–123. ( 10.1016/j.bpj.2013.11.014) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 110.Itoh T, Erdmann KS, Roux A, Habermann B, Werner H, De Camilli P. 2005. Dynamin and the actin cytoskeleton cooperatively regulate plasma membrane invagination by BAR and f-BAR proteins. Dev. Cell. 9, 791–804. ( 10.1016/j.devcel.2005.11.005) [DOI] [PubMed] [Google Scholar]
- 111.Noireaux V, Golsteyn R, Friederich E, Prost J, Antony C, Louvard D, Sykes C. 2000. Growing an actin gel on spherical surfaces. Biophys. J. 78, 1643–1654. ( 10.1016/S0006-3495(00)76716-6) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 112.Allard J, Mogilner A. 2013. Traveling waves in actin dynamics and cell motility. Curr. Opin. Cell. Biol. 25, 107–115. ( 10.1016/j.ceb.2012.08.012) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 113.Enculescu M, Sabouri-Ghomi M, Danuser G, Falcke M. 2010. Modeling of protrusion phenotypes driven by the actin-membrane interaction. Biophys. J. 98, 1571–1581. ( 10.1016/j.bpj.2009.12.4311) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 114.Gholami A, Enculescu M, Falcke M. 2012. Membrane waves driven by forces from actin filaments. New. J. Phys. 14, 115002 ( 10.1088/1367-2630/14/11/115002) [DOI] [Google Scholar]
- 115.Wu Z, Su M, Tong C, Wu M, Liu J.. 2018. Membrane shape-mediated wave propagation of cortical protein dynamics. Nature Communications 9, 136 ( 10.1038/s41467-017-02469-1) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 116.Shlomovitz R, Gov N. 2007. Membrane waves driven by actin and myosin. Phys. Rev. Lett. 98, 168103 ( 10.1103/PhysRevLett.98.168103) [DOI] [PubMed] [Google Scholar]
- 117.Shlomovitz R, Gov N. 2008. Exciting cytoskeleton-membrane waves. Phys. Rev. E 78, 041911 ( 10.1103/PhysRevE.78.041911) [DOI] [PubMed] [Google Scholar]
- 118.Döbereiner H-G, Dubin-Thaler BJ, Hofman JM, Xenias HS, Sims TN, Giannone G, Dustin ML, Wiggins CH, Sheetz MP. 2006. Lateral membrane waves constitute a universal dynamic pattern of motile cells. Phys. Rev. Lett. 97, 038102 ( 10.1103/PhysRevLett.97.038102) [DOI] [PubMed] [Google Scholar]
- 119.Chen C-H, Tsai F-C, Wang C-C, Lee C-H. 2009. Three-dimensional characterization of active membrane waves on living cells. Phys. Rev. Lett. 103, 238101 ( 10.1103/PhysRevLett.103.238101) [DOI] [PubMed] [Google Scholar]
- 120.Ng WP, Webster KD, Stefani C, Schmid EM, Lemichez E, Bassereau P, Fletcher DA. 2017. Force-induced transcellular tunnel formation in endothelial cells. Mol. Biol. Cell. 28, 2650–2660. ( 10.1091/mbc.E17-01-0080) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 121.Bernitt E, Koh CG, Gov N, Döbereiner H-G. 2015. Dynamics of actin waves on patterned substrates: a quantitative analysis of circular dorsal ruffles. PLoS ONE 10, e0115857 ( 10.1371/journal.pone.0115857) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 122.Kovacs EM, Makar RS, Gertler FB. 2006. Tuba stimulates intracellular n-wasp-dependent actin assembly. J. Cell. Sci. 119, 2715–2726. ( 10.1242/jcs.03005) [DOI] [PubMed] [Google Scholar]
- 123.Veksler A, Gov NS. 2009. Calcium-actin waves and oscillations of cellular membranes. Biophys. J. 97, 1558–1568. ( 10.1016/j.bpj.2009.07.008) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 124.Jacques-Fricke BT, Seow Y, Gottlieb PA, Sachs F, Gomez TM. 2006. Ca2+ influx through mechanosensitive channels inhibits neurite outgrowth in opposition to other influx pathways and release from intracellular stores. J. Neurosci. 26, 5656–5664. ( 10.1523/JNEUROSCI.0675-06.2006) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 125.Vanagas L, Rossi RC, Caride AJ, Filoteo AG, Strehler EE, Rossi JPF. 2007. Plasma membrane calcium pump activity is affected by the membrane protein concentration: evidence for the involvement of the actin cytoskeleton. Biochim. Biophys. Acta (BBA) 1768, 1641–1649. ( 10.1016/j.bbamem.2007.03.012) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 126.Nolz JC, Gomez TS, Zhu P, Li S, Medeiros RB, Shimizu Y, Burkhardt JK, Freedman BD, Billadeau DD. 2006. The WAVE2 complex regulates actin cytoskeletal reorganization and CRAC-mediated calcium entry during T cell activation. Curr. Biol. 16, 24–34. ( 10.1016/j.cub.2005.11.036) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 127.Korkotian E, Segal M. 2001. Spike-associated fast contraction of dendritic spines in cultured hippocampal neurons. Neuron 30, 751–758. ( 10.1016/S0896-6273(01)00314-2) [DOI] [PubMed] [Google Scholar]
- 128.Oertner TG, Matus A. 2005. Calcium regulation of actin dynamics in dendritic spines. Cell Calcium 37, 477–482. ( 10.1016/j.ceca.2005.01.016) [DOI] [PubMed] [Google Scholar]
- 129.Meng Y. et al. 2002. Abnormal spine morphology and enhanced LTP in LIMK-1 knockout mice. Neuron 35, 121–133. ( 10.1016/S0896-6273(02)00758-4) [DOI] [PubMed] [Google Scholar]
- 130.Rondé P, Giannone G, Gerasymova I, Stoeckel H, Takeda K, Haiech J. 2000. Mechanism of calcium oscillations in migrating human astrocytoma cells. Biochim. Biophys. Acta (BBA) 1498, 273–280. ( 10.1016/S0167-4889(00)00102-6) [DOI] [PubMed] [Google Scholar]
- 131.Wu M, Wu X, De Camilli P. 2013. Calcium oscillations-coupled conversion of actin travelling waves to standing oscillations. Proc. Natl Acad. Sci. USA 110, 1339–1344. ( 10.1073/pnas.1221538110) [DOI] [PMC free article] [PubMed] [Google Scholar]
- 132.Liu AP, Fletcher DA. 2009. Biology under construction: in vitro reconstitution of cellular function. Nat. Rev. Mol. Cell. Biol. 10, 644–650. ( 10.1038/nrm2746) [DOI] [PMC free article] [PubMed] [Google Scholar]
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