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. Author manuscript; available in PMC: 2018 Apr 24.
Published in final edited form as: Genesis. 2016 Nov 12;54(12):613–625. doi: 10.1002/dvg.22990

Table 2.

Expression levels of otoconial genes by RNA-Seq analysis (as fragments per kilobase per million reads, or FPKM) of epithelial cells from the C57BL/6J utricle and saccule at age P0 and 8 months (8M).

Product Type Gene P0 8M 8M/P0
Constituent proteins Oc90 10405.5 13.4 0.0
Otol1 296.9 63.6 0.2
Sparc 4059.5 1451.5 0.4
Sparcl1 665.7 378.9 0.6
Spp1 (splice variant 1) 392.0 5433.6 13.9
Spp1 (splice variant 2) 35.3 234.2 6.6
Dmp1 2.4 6.3 2.6
Lum 105.1 27.2 0.3
Fmod 14.1 3.8 0.3
Omd 3.7 20.8 5.6
Ahsg 0.2 0.0 0.0

Regulatory proteins Otop1 20.4 2.2 0.1
Nox3 25.0 33.2 1.3
Cyba 230.2 418.6 1.8
Noxo1 78.4 40.0 0.5
Noxa1 (splice variant 1) 1.5 0.0 0.0
Noxa1 (splice variant 2) 0.0 0.1 N/A
Slc26a4 16.8 51.1 3.0
Slc30a4 3.2 2.7 0.9
Pldn 24.6 11.6 0.5
Atg4a 7.7 6.9 0.9
Atg4b 30.4 18.4 0.6
Atg4c 13.4 4.1 0.3
Atg4d 9.1 6.0 0.7
Atp2b2 6.6 15.8 2.4
Car2 172.9 180.9 1.0
Car3 1403.4 1278.8 0.9
Car7 73.6 47.3 0.6
Car12 91.0 65.6 0.7
Car13 24.3 47.0 1.9
Car14 87.7 266.7 3.0
Trpv2 0.9 1.4 1.6
Trpv4 24.1 7.5 0.3
Trpv6 2.0 0.1 0.1

Anchoring proteins Otog 86.5 67.4 0.8
Otoa 229.1 109.5 0.5
Otogl 10.8 2.6 0.2
Tecta 103.3 14.7 0.1
Tectb 620.8 132.6 0.2