Programmed Death Ligand 1 Expression and Tumor Infiltrating Lymphocytes in Neurofibromatosis Type 1 and 2 Associated Tumors

Abstract

Introduction

Immune checkpoint inhibitors targeting programmed cell death 1 (PD-1) or its ligand (PD-L1) have been shown to be effective in treating patients with a variety of cancers. Biomarker studies have found positive associations between clinical response rates and PD-L1 expression on tumor cells, as well as the presence of tumor infiltrating lymphocytes (TILs). It is currently unknown whether tumors associated with neurofibromatosis types 1 and 2 (NF1 and NF2) express PD-L1.

Methods

We performed immunohistochemistry for PD-L1 (clones SP142 and E1L3N), CD3, CD20, CD8, and CD68 in NF1-related tumors (10 dermal and 6 plexiform neurofibromas) and NF2-related tumors (10 meningiomas and 10 schwannomas) using archival formalin-fixed paraffin-embedded tissues. Expression of PD-L1 was considered positive in cases with >5% membranous staining of tumor cells, in accordance with previously published biomarker studies.

Results

PD-L1 expression in tumor cells (using the SP142 and E1L3N clones, respectively) was assessed as positive in plexiform neurofibromas (6/6 and 5/6) dermal neurofibromas (8/10 and 6/10), schwannomas (7/10 and 10/10), and meningiomas (4/10 and 2/10). Sparse to moderate presence of CD68, CD3, or CD8 positive TILs was found in 36 (100%) of tumor specimens.

Conclusions

Our findings indicate that adaptive resistance to cell-mediated immunity may play a major role in the tumor immune microenvironment of NF1 and NF2-associated tumors. Expression of PD-L1 on tumor cells and the presence of TILs suggest that these tumors might be responsive to immunotherapy with immune checkpoint inhibitors, which should be explored in clinical trials for NF patients.

Introduction

Neurofibromatosis type 1 (NF1) and type 2 (NF2) represent two distinct, autosomal dominant tumor predisposition syndromes caused by germline mutations in the NF1 and NF2 gene respectively. The most common tumor types arising in NF1 patients are cutaneous neurofibromas and plexiform neurofibromas. The predominant tumor types arising in patients with NF2 are multiple schwannomas, most commonly bilateral vestibular schwannomas, and meningiomas. While the majority of NF-related tumors are histologically benign, they are a leading cause of morbidity and mortality in NF patients. Standard therapies have traditionally included surgery and radiation therapy, and molecular targeted therapies have recently emerged with some success in subsets of NF-related tumors [1-4]. Despite these advances, there remains an urgent need for novel, more effective and less toxic therapies for NF patients, especially those with large tumor burden.

Immune checkpoint inhibitors, including antibodies targeting programmed death ligand-1 (PD-L1) and its receptor, PD-1 have been emerged as a promising therapeutic approach for a variety of cancers. As members of the immune checkpoint family, PD-L1 and PD-1 function as physiological immune suppressors to limit T cell response and help avoid autoimmunity [5]. PD-L1 overexpression is found in various tumor types and associated with poor prognosis [6]. Activation of cytokines and/or oncogenic signaling pathways, including EGFR tyrosine kinase signaling, MAP kinase and PI3/Akt–mTOR pathways, may lead to upregulation of PD-L1 [6-7]. The engagement of PD-1 on T cells with PD-L1on tumor cells leads to an inactive T-cell status with decreased T cell proliferation and survival, as well as increased suppressor T cell differentiation [8]. Therefore, blockage of the immune checkpoint PD L-1/PD-1axis may reactivate CD8 positive cytotoxic T cells that recognize and eliminate tumor cells. The FDA has approved anti-PD1 and anti-PD-L1 antibodies to treat a growing spectrum of cancers, including renal cell, colon and rectum, bladder, head and neck, Merkel cell, and non-small cell lung cancer, as well as Hodgkin's lymphoma and melanoma [6]. Many clinical trials are currently underway to investigate the therapeutic potential of these antibodies in various tumors, alone or in combination with other therapies [8-9].

NF1 and NF2 associated tumors are characterized as “inflammatory” tumors with abundant tumor macrophage infiltration, elevated serum IFNγ levels, and dysregulation of oncogenic signaling pathways [10-13]. These elevated cytokines and amplified signaling pathways may provide a potential mechanism for upregulation of PD-L1 expression in tumor cells [1, 3, 14]. Therefore, we hypothesized that PD-1/PD-L1 axis-mediated immune escape mechanisms might also exist in NF related tumors.

It has been recognized that tumor cell membrane expression of PD-L1, as well as tumor infiltrating CD8 positive cytotoxic T cells represent predictive biomarkers associated with therapeutic response to PD-1 blockade [15]. We hypothesized that adaptive resistance to cell-mediated immunity may play a major role in the tumor immune microenvironment of NF1 and NF2-associated tumors, which would suggest that immune checkpoint inhibitors might be a new therapeutic strategy for the treatment of NF-associated tumors. Therefore, we examined PD-L1 membrane expression in NF1-associated cutaneous neurofibromas and plexiform neurofibromas as well as NF2-associated meningiomas and schwannomas by immunohistochemical staining. We further characterized the immune environment in these tumors by assessing the infiltration of lymphocytes, including CD8 positive cytotoxic T cells.

Methods

Patients and Tissue Specimens

This study was initiated under an Institutional Review Board (IRB) approved protocol at New York University-Langone Health. For this study, we selected archival formalin-fixed paraffin-embedded (FFPE) tumor samples from patients who met clinical diagnostic criteria for NF1 or NF2, excluding patients who had previously been treated with chemotherapy or radiation therapy. In total, 16 NF1 related tumors (10 cutaneous neurofibromas and 6 plexiform neurofibromas) and 20 NF2-related tumors (10 meningiomas and 10 schwannomas) with adequate quality and quantity of tissue were selected for further study, after review of slides by two neuropathologists (MS and BL).

Immunohistochemistry

Immunohistochemistry (IHC) was performed at NYU Langone Health on 5-μm FFPE human tissue sections using the following unconjugated antibodies: rabbit anti-human CD3, human CD8, clone SP57 (Ventana Medical Systems. Cat# 790-4460 Lot# C05708 RRID: AB_2335985274), mouse anti-human CD20, clone L26 (Ventana Medical Systems. Cat# 760-2531 Lot# C06261 RRID: AB_2335956), mouse anti-human CD68, clone Kp1 (Ventana Medical Systems. Cat# 790-2931 Lot# B09466 RRID: AB_2335972), and CD274, Programmed Cell Death 1 Ligand 1, clone SP142 (Spring Biosciences Cat# M4420 Lot# 141027LVK RRID: unassigned). Chromogenic IHC was performed on a Ventana Medical Systems Discovery XT instrument with online deparaffinization and using Ventana's reagents and detection kits, unless otherwise noted. With the exception of CD20, markers were antigen retrieved in Ventana Cell Conditioner 1 (Tris-Borate-EDTA) as follows: CD68; 20 minutes, CD3 and CD8; 36 minutes, and CD274; 52 minutes. Endogenous peroxidase activity was blocked with 3% hydrogen peroxide for 4 minutes. All antibodies were applied neat and incubated for 30 minutes except for CD274 which was diluted 1:50 in Dulbecco's phosphate buffered saline (Invitrogen Life Technologies) and incubated for 60 minutes at room temperature. CD3 and CD8 were detected with goat anti-rabbit and CD20 and CD68 were detected goat anti-mouse, multimers incubated for 8 minutes respectively. The immune complexes were visualized with 3,3 diaminobenzidene and enhanced with copper sulfate. PDL1 was detected with hapten linked, anti-rabbit multimer incubated for 32 minutes followed by anti-hapten horseradish peroxidase conjugate for 32 minutes. This was followed by hapten-conjugated tyramide and horseradish peroxidase incubated for 32 minutes. The complex was visualized with 3,3 diaminobenzidene and enhanced with copper sulfate. Slides were washed in distilled water, counterstained with hematoxylin, dehydrated and mounted with permanent media.

Immunohistochemical staining using an additional PD-L1 antibody (Cell Signaling Technology, clone E1L3N) was performed was performed at Memorial Sloan Kettering Cancer on formalin-fixed paraffin-embedded archival tissue blocks sectioned onto charged (plus) slides at 4μm and run on a Leica Bond RX automated staining machine at a concentration of 2.02 μg/ml following antigen retrieval in ER2 for 30 minutes at room temperature with primary antibody incubation for 30 minutes and developed using a Leica Bond polymer refine IHC detection system. PDL1 (Cell Signaling Technology; clone E1L3N) staining was run on a Leica Bond RX automated staining machine at a concentration of 2.02 μg/ml following antigen retrieval in ER2 for 30 minutes at room temperature with primary antibody incubation for 30 minutes and developed using a Leica Bond polymer refine IHC detection system.

Expression of PD-L1 and immune cell markers was evaluated blindly by two neuropathologists. The scores of PD-L1 staining were counted based on the amount of cell membrane expression on tumor cells versus total tumor cells in the tissue sections. PD-L1 positive expression was defined as >5% tumor cells with cell membrane staining. The density of CD8+, CD3+, CD20+ and CD68+ immune cells was assessed based on overall impression of sparse, moderate, or intense at low microscopic magnification (100×). Staining was assessed considering the morphology of inflammatory cells. CD8+, CD3+, CD20+ cells were small with high nuclear/cytoplasmic ration compatible with lymphocytes. For CD68+, only cells with abundant clear/foamy cytoplasm consistent with macrophages were considered. All IHC sections were compared to matching H&E sections to ensure that expression of inflammatory cell markers is not present in tumor cells. In addition, staining was assessed as patchy when there was marked variability in expression across the entire slide. Then, cell density was further assessed by cell counting within the most densely infiltrated focus arising within the tumor tissue identified in a single high power (400×) field, taking care to exclude immunopositive cells not arising in a background of tumor (e.g. in perivascular spaces or regions of hemorrhage) or regions of spurious expression (e.g. artifactual staining, or expression in cells with equivocal morphologic features).

Statistical Analysis

The chi-square test was utilized to test group association between PD-L1 expression and CD8 positive T cell density. A significance p value of 0.05 was applied. Statistics were calculated using freely available software at www.socscistatistics.com.

Results

Patient Characteristics

The patients' age (at the time of tumor resection), NF status, gender, and tumor types, are listed in Table 1. The diagnosis of NF1 or NF2 in all patients was made using currently established clinical diagnostic criteria [1-2]. Two NF1 patients concurrently had a malignant nerve sheath tumor (MPNST) in a different anatomical location. One of the patients with plexiform neurofibroma subsequently developed MPNST in a different location, with a latency of 7 years.

Table 1. Summary of Patient Characteristics.

Median age [years] at Tumor Resection (range)	23.5 (7– 49)
Gender	N	%
Female	19	53
Male	17	47
NF Status	N	%
NF1	16	44
NF2	20	56
Tumor Types	N	%
Meningioma (NF2)	10	28
Schwannoma (NF2)	10	28
Plexiform Neurofibroma (NF1)	6	17
Cutaneous Neurofibroma (NF1)	10	28

PD-L1 Expression

PD-L1 expression on tumor cell membrane has been recognized as a predictive marker associated with therapeutic response with anti-PD-1/anti PD-L1 checkpoint inhibitor antibodies [15]. Among the commercially available antibodies, we chose two rabbit monoclonal antibodies that target the cytoplasmic domain of PD-L1. These two antibodies have been reported to be more specific and sensitive compared to other clones [16]. Tumor cells were identified based on morphology and compared with the hematoxylin and eosin stain (H&E) on corresponding adjacent tissue sections. Positive expression for PD-L1 was defined as membranous staining in greater than 5% of tumor cells. Positive PD-L1 expression expression using two clones (SP142 and E1L3N, respectively) was observed in 6/6 (100%) and 5/6 (83%) of NF1 plexiform neurofibromas, 8/10 (80%) and 6/10 (60%) of NF1 dermal neurofibromas, 7/10 (70%) and 10/10 (100%) of NF2 schwannomas, and 4/10 (40%) and 2/10 (20%) of NF2 meningiomas. In 68% of examined tumor tissues, the results were concordant with both antibodies. Taken together, these data indicate that PD-L1 is heterogeneously expressed in NF associated tumors, with the highest percentage of PD-L1 positive tumor cells and strongest PD-L1 expression observed in NF1 plexiform neurofibromas and NF2 schwannomas (Fig. 1).

Figure 1. Immunohistochemistry staining of PD-L1 expression in NF associated tumors.

This figure illustrates the PD-L1 expression at low magnification (100×) and high magnification (400×) with monoclonal antibodies, clone SP142 (E to H) vs. E1L3N (I to L) in NF2 meningioma (E vs. I), NF2 schwannoma (F vs. J), NF1 cutaneous neurofibroma (G vs. K), and NF1 plexiform neurofibroma (H vs. L). H&E stains (A to D) indicate the morphology of NF related tumors: NF2 meningioma (A), NF2 schwannoma (B), NF1 cutaneous neurofibroma (C), and NF1 plexiform neurofibroma (D) at low magnification (100×) and high magnification (400×).

Tumor-infiltration Lymphocytes and Macrophages

Tumor response to immune checkpoint inhibitors is not only associated with infiltration of lymphocytes in general, but also associated the type and location of lymphocytic infiltrate [15]. Tumors with baseline infiltration of CD8+ cytotoxic lymphocytes are generally considered good candidates for checkpoint inhibitor therapy. We further characterized the NF tumor immune microenvironment by immunohistochemical staining with macrophage and lymphocyte markers, with CD68 staining for macrophages, CD3 for all mature T cells, CD8 for cytotoxic T cells, and CD20 for B cells (Fig2.). Comparing immunohistochemical and H&E slides, tumor cells did not aberrantly express any of the inflammatory markers. The distribution pattern and cell density of TILs is summarized in Table 2. We found sparse to moderate presence of CD68, CD3, or CD8 positive TILs in 36/36 (100%) of tumor specimens. However, expression of CD20+ B lymphocytes was limited to rare intratumoral cells detectable in 4/36 (11%) of tumors. We found CD20+ cells to be predominantly located in proximity to tumor vasculature in NF2 meningiomas and schwannomas (Fig 2, C&G). The distribution of CD3+ and CD8+ T cells was found to be mostly patchy, while CD68+ macrophages were more diffusely present.

Figure 2. Tumor-infiltrating lymphocytes and macrophages in NF-related tumors.

Immunohistochemistry stain of CD3, CD8, CD68, and CD20 positive lymphocytes and macrophages in NF2 meningioma (A–D), NF2 schwannoma (E-H), NF1cutanous neurofibroma (I-L), and NF1 plexiform neurofibroma (M-P). This figure reveals the infiltration of CD3+ (A, E, I, and M) and CD8+ (B, F, J, and N) T lymphocytes and CD68+ (D, H, L, and P) macrophages in tumor tissues, not CD20+ B cells (C, G, K, and O). “Leaking” of CD20+ B cells in meningioma and schwannoma is shown in (C and G), with arrows indicating the vascular structures.

Table 2. Summary of tumor infiltrating lymphocytes and macrophages.

	NF2 Meningioma				NF2 Schwannoma
	CD68+ TIL (n=9)	CD3+ TIL (n=9)	CD8+ TIL (n=9)	CD20+ TIL (n=9)	CD68+ TIL (n=10)	CD3+ TIL (n=10)	CD8+ TIL (n=10)	CD20+ TIL (n=10)
Density
Negative	0/9	1/9	1/9	8/9	1/10	0/10	0/10	9/10
Sparse	0/9	0/9	0/9	1/9	1/10	0/10	1/10	1/10
Focal	0/9	1/9	1/9	0/9	1/10	2.5* /10	1.5*/10	0/10
Patchy	2/9	3.5* /9	6/9		5/10	4* /10	5/10	0/10
Diffuse	7/9	3.5* /9	1/9	0/9 0/9	2/10	3.5* /10	2.5* /10	0/10
Intensity
Negative	0/9	1/9	1/9	8/9	0/10	0/10	0/10	9/10
Mild	6/9	4/9	5/9	1/9	2/10	4.5* /10	9/10	1/10
Moderate	2/9	4/9	3/9	0/9	7/10	5.5* /10	1/10	0/10
Strong	1/9	0/9	0/9	0/9	1/10	0/10	0/10	0/10

	NF1 Plexiform Neurofibroma				NF1 Cutaneous Neurofibroma
	CD68+ TIL (n=5)	CD3+ TIL (n=5)	CD8+ TIL (n=5)	CD20+ TIL (n=5)	CD68+ TIL (n=10)	CD3+ TIL (n=10)	CD8+ TIL (n=11)	CD20+ TIL (n=10)
Density
Negative	0/5	0/5	0/5	4/5	0/10	1/10	0/10	9/10
Sparse	0/5	0/5	0/5	1/5	2/10	0/10	1/10	1/10
Focal	0.5* /5	0/5	0.5/5	0/5	0.5* /10	0/10	2* /10	1/10
Patchy	1/5	3/5	2/5	0/5	2/10	5/10	5.5/10	0/10
Diffuse	3.5* /5	2/5	2.5/5	0/5	5.5* /10	4/10	1.5* /10	0/10
Intensity
Negative	0/5	0/5	0/5	4/5	0/10	0/10	0/10	9/10
Mild	4.5* /5	5/5	4.5* /5	1/5	7.5/10	6/10	10/10	2/10
Moderate	0/5	0/5	0.5* /5	0/5	1.5/10	4/10	0/10	0/10
Strong	0.5* /5	0/5	0/5	0/5	0/10	0/1	0/10	0/10

Abbreviations: TIL, tumor infiltration lymphocytes; NF1, neurofibromatosis type 1; NF2, neurofibromatosis type 2

^*In cases where two distinct immune staining patterns were observed simultaneously, each was scored as 0.5

Association of Tissue-Based Markers

Utilizing immunohistochemistry for PD-L1 (clone SP142) and CD8 performed on adjacent tissue sections, we found a positive association between PD-L1 (clone SP142) positivity and CD8+ TIL density (p < 0.03) (Table 3). Although for technical reasons, (i.e. re-cutting of tissue blocks), immunostains for CD8 and PD-L1 clone 1EL3N were not performed on immediately adjacent tissue sections, we still found higher levels of CD8+ cell infiltration in PD-L1 positive tumors compared to PD-L1 negative tumors (Table 3). This result provides further evidence that adaptive resistance to cell-mediated immunity plays a major role in the tumor immune microenvironment of NF related tumors.

Table 3. Summary of PD-L1 expression and CD8 cytotoxic T cell tumor infiltration (sp142 vs. 1EL3N).

Number of CD8 positive T cells	PD-L1 (sp142)		PD-L1 (1EL3N)
	Positive (n)	Negative (n)	Positive (n)	Negative (n)
0<=25 cells/400×	3	6	6	2
<25<=50 cells/400×	5	3	4	4
<50<=100 cells/400×	12	1	11	1
>100 cells/400×	3	1	2	2
Total:	23	11	23	11

For sp142: The chi-square statistic is 8.6499. The p-value is 0.03 (significant at p < 0.05.

For 1EL3N: The chi-square statistic is 5.2045. The p-value is 0.17 (not significant at p < 0.05)

Conclusions

PD-L1 expression by tumor cells and CD8 cytotoxic T cell infiltration are well-recognized predictive biomarkers for response to immune checkpoint inhibitors [15]. Previous publications have demonstrated PD-L1 expression in schwannomas [17] and meningiomas [18], but these series included sporadic tumors and did not focus specifically on NF patients. Loss of NF1 in tumors has been shown to lead to macrophage infiltration [19-20], and the subsequent increase in cytokines may facilitate recruitment of CD8+ cytotoxic T cells [21-22]. However, the specific mechanisms leading to TIL recruitment and upregulation of PD-L1 in the context of NF1 and NF2 tumorigenesis merit further investigation.

Our findings indicate that adaptive resistance to cell-mediated immunity plays a major role in the tumor immune microenvironment of NF1 and NF2 associated tumors. The presence of TILs and high expression of PD-L1 on tumor cells suggests that NF patients with plexiform neurofibromas and vestibular schwannomas may be responsive to immunotherapy with immune checkpoint inhibitors, which should be explored in clinical trials.

Recent data indicates that the therapeutic efficacy of checkpoint inhibitors may be augmented by targeted molecular therapy [23]. The combination of BRAF/MAP kinase and immune checkpoint inhibition may increase therapeutic efficacy [24], and VEGF as well as PI3-Akt-mTOR signaling appears to play a role in PD-L1 expression and recruitment of inhibitory immune cells [6, 25-27]. Based on our findings, and given that therapies targeting VEGF, mTOR and MEK have yielded clinical responses in subsets of NF patients [28-30], exploring combinatorial therapies with checkpoint inhibitors appears to be a fruitful area of further pre-clinical and clinical investigation.