Abstract
The histidine-rich salivary peptides of the histatin family are known to bind copper (Cu) and other metal ions in vitro, but the details of these interactions are poorly understood and their implications on in vivo antifungal activity have not been established. Here, we show that availability of Cu during exposure of Candida albicans to histatin-5 (Hist-5) modulates its antifungal activity. Antifungal susceptibility testing revealed that co-treatment of Hist-5 with Cu improved the EC50 from ~5 µM to ~1 µM, whereas co-treatment with a high-affinity Cu-specific chelator abrogated antifungal activity. Spectrophotometric titrations revealed two previously unrecognized Cu(I) binding sites with apparent Kd values at pH 7.4 ~ 20 nM, and confirmed a high-affinity Cu(II) binding site at the Hist-5 N-terminus with apparent Kd ~ 8 pM. Evaluation of a series of His-to-Ala peptides containing the first 12 residues of Hist-5 identified adjacent His residues (bis-His) as critical anchors for Cu(I) binding, and the presence of a third ligand was revealed by X-ray absorption spectroscopy (XAS). On their own, the truncated peptides were ineffective at inhibiting growth of C. albicans, but treatment with supplemental Cu resulted in EC50 values down to ~ 5 µM, approaching that of full-length Hist-5. The efficacy of the peptides depended on an intact bis-His site and correlated with Cu(I) affinity. Together, these results establish new structure-function relationships linking specific histidine residues with Cu-binding affinity and antifungal activity, and provide further evidence for the involvement of metals in modulating the biological activity of these antifungal peptides.
Keywords: Histatin, Cu(I), Cu(II), EXAFS, antifungal, peptide, metallopeptide, bis-His, ATCUN, Candida albicans
SYNOPSIS TOC
Spectroscopic titrations, XAS and antifungal assays were used to explore the relationship between copper-binding and antifungal properties of the salivary peptide Histatin-5. Copper availability was shown to modulate the cytotoxicity of Hist-5 against Candida albicans, and evidence suggests that such modulation is due to a direct interaction between Cu and the peptide. Adjacent His residues (bis-His) were identified to be critical for Cu(I) binding, and that the efficacy of the peptide depends on an intact bis-His site. Therefore, our results provide evidence suggesting that the bis-His site may not only serve as a primary anchor for Cu(I) binding, but, once bound to Cu(I), may also be responsible for the antifungal activity of Hist-5. Together, these results establish new structure-function relationships linking specific histidine residues with Cu-binding affinity and antifungal activity, and provide further evidence for the involvement of metals in modulating the biological activity of these antifungal peptides.
Human saliva contains numerous antimicrobial peptides that protect against bacterial, fungal and viral infection.1 Among these are histatins, a family of twelve histidine-rich cationic peptides that range from 7 to 38 residues in length, and are weakly amphipathic. With a concentration of 15–30 µM, Histatin-5 (Hist-5) is the most abundant in saliva as well as the most effective at killing Candida albicans (median lethal dose ~ 2–10 µM), an opportunistic fungal pathogen commonly found in mucosal membranes.2–5 While other classes of cationic antimicrobial peptides target the plasma membrane and kill by inducing pores, Hist-5’s intrinsic disorder and lack of helicity in aqueous solution suggests that it operates by an alternative mechanism.6–7 The mechanism of Hist-5 antimicrobial activity has been vigorously debated; however there is now general consensus that Hist-5’s antimicrobial activity involves intracellular targets.8–10 The evolution of understanding of Hist-5 candidacidal mechanism has been reviewed recently.11
Heat shock proteins Ssa1 and Ssa2 have been identified as the cell envelope binding proteins that facilitate Hist-5 cellular entry in Candida,12 after which it has been shown to localize to the mitochondria and cause inhibition of the respiratory chain and propagation of reactive oxygen species (ROS).13 While ROS have been implicated in fungal cell death,14 the source and mechanism remain unclear.
ROS formation is commonly associated with redox-active metals, which has made the investigation of Hist-5’s metal-binding properties an area of interest and speculation.15 Indeed, Hist-5 possesses multiple metal-ligating amino acid side chains, including seven histidines arranged in motifs characteristic of metalloproteins and metallopeptides. Notably, Hist-5 displays an Amino Terminal Cu(II), Ni(II) binding motif (ATCUN; H2N-X-X-His),16–17 a His-Glu-X-X-His Zn(II)-binding motif, and a bis-His motif composed of adjacent histidines and that supports Cu(I) binding.18–20 The characteristic structures of Cu bound to ATCUN and bis-His motifs is shown in Fig. 1.
Metal-binding properties of Hist-5 have been proposed for nearly two decades,15, 21–22 and its metal-binding interactions with Cu(II), Ni(II), Zn(II) and Fe(III) have been investigated in vitro.21–26 Metal binding has been observed to modify the conformation and biological activity of Hist-5. Whereas binding to divalent ions like Cu(II), Ni(II) and Zn(II) was not found to stabilize secondary structure of Hist-5,27 binding to Fe(III) has been shown to induce an α-helical conformation.22 At least one study showed that supplemental Zn(II) improved the bactericidal activity of Hist-5,28 while other studies showed no effect of Zn on Hist-5 candidacidal activity.22 On the other hand, Fe supplementation was observed to decrease the in vitro candidacidal activity of Hist-5, and Hist-5 itself caused a decrease in expression levels of iron uptake genes in C. albicans.22
The effects of Cu on the antifungal activity of Hist-5 have not been explicitly studied, although several reports in the literature speculate on a possible role of Cu redox chemistry on Hist-5 activity. For example, hydrogen peroxide was detected from aqueous solutions of Cu(II), Hist-5 and ascorbic acid, raising the intriguing possibility that Cu-Hist-5 complexes can catalyze ROS generation.29–31 The fact that yeast mitochondria have been shown to have a non-proteinaceous pool of copper in the mitochondrial matrix,32 where Hist-5 localizes, suggests ROS production as a feasible mechanism involved in killing.
To date, a lack of biological and chemical data to support or refute the hypothesis that Cu plays an important role in Hist-5 antimicrobial activity represents a significant gap in knowledge. Data on the coordination structures and binding affinities of both Cu(II) and Cu(I) interactions with Hist-5 and whether Cu sites are required for Hist-5 activity is crucial for understanding the chemical details of Hist-5’s biological activity. Although Cu interactions with Hist-5 and its model peptides have been investigated previously, the published affinity constant for interaction between Cu(II) and the ATCUN site of Hist-5 is surprisingly low (KHist-5-Cu(II) = 2.6 × 107)15 compared to values characterized for other ATCUN peptide systems (KCu(II)P values ranging from 1011 – 1015).19, 33–35 To the best of our knowledge, the potential interactions between Hist-5 and Cu(I) have not been investigated. Further, it is unknown what effect, if any, Cu binding sites have on the antifungal activity of Hist-5.
Here, we reevaluate the Hist-5 Cu(II) affinity constant using methods similar to those that have recently been published for similar ATCUN-containing peptide systems.19, 33 We also present new evidence of the affinity and coordination structures of Hist-5 Cu(I) binding. Additionally, we characterize the potential role of Cu in Hist-5 candidacidal activity and present the first evidence that Cu availability improves growth inhibition of C. albicans by Hist-5 in fungal growth assays. Furthermore, we show that the first twelve amino acids of Hist-5 retain significant antifungal activity in a Cu-dependent fashion, whereas modification of key Cu-binding residues abrogates activity. Interestingly, the Cu-dependent growth inhibition correlates with the presence of a bis-His site and the affinity of the peptides for Cu(I). These findings reveal the importance of Cu and Cu-binding motifs for the antifungal activity of Hist-5, providing further evidence for the involvement of metals in modulating the biological activity of histatin antifungal peptides.
Results
Hist-5 and a series of truncated peptides based on its first 12 amino acids were synthesized via Fmoc solid-phase peptide synthesis. Truncated peptides with His-to-Ala substitutions were prepared in order to probe the importance of His residues on Cu(II) and Cu(I) binding affinity and antifungal activity; names and sequences are shown in Table 1.
Table 1. Names, sequences, and apparent Cu-binding affinities (50 mM HEPES, pH 7.4) of Hist-5 and truncated peptides.a.
Histidines (H) are bolded, alanine (A) substitutions are bolded in red, and both A and H of interest are labelled with the number of their location in the peptide sequence. Both ATCUN and bis-His motifs are underlined. All peptides contain a free amino N-terminus. The C-terminus is a carboxylic acid for Hist-5, and an amide for the truncations. Apparent affinity constants (log K) for Cu(II) and Cu(I) were determined in 50 mM HEPES buffer, pH 7.4, according to the indicated stoichiometric model.
H7A binds in a 2:1 fashion (peptide:Cu(I)), therefore two peptide binding events occur for the formation of the complex, giving an overall log β2 of 10.1
ATCUN site confers Hist-5 with high affinity for Cu(II)
Addition of CuSO4 to buffered solutions of Hist-5 resulted in an absorption band centered at 530 nm (ε = 110 M−1cm−1), indicative of a square-planar, 4N-coordination environment of Cu(II) bound in an ATCUN site, as drawn in Fig. 1.36 Nearly identical absorption bands were observed for all the peptides except H3A, which resulted in an absorbance redshift to ~ 620 nm (Fig. 2).
Determination of the apparent affinity constants at pH 7.4 for Cu(II) binding to each peptide was facilitated by using nitrilotriacetic acid (NTA) as a competitive ligand (Fig. 3), an appropriate methodology for determining metal–protein or peptide affinities.37 Hist-5 was determined to bind Cu(II) with an apparent log KHist-5-Cu(II) of 11.1 ± 0.2 (Kd ~ 8 pM). While direct titration of Hist-5 with Cu(II) indicated that Hist-5 is capable of binding more than one equivalent of Cu(II), as reported by others,15 the competition studies showed that none of these additional sites are strong enough to compete with NTA for Cu(II). As shown in Table 1, neither truncation to the first 12 residues nor replacement of His 7 and 8 diminished Cu(II) affinity. Peptide H3A, on the other hand, did not compete for Cu(II) with NTA, therefore its affinity is too weak to be measured by this method. Together these results confirm that Hist-5 binds Cu(II) preferentially via the ATCUN site, regardless of other potential metal-binding residues present, and altering this site drastically decreases its Cu(II) affinity.
The bis-His motif contributes to Cu(I) binding of Hist-5 peptides
Apparent binding affinities for Cu(I) were determined anaerobically by using Ferrozine (Fz) as a colorimetric competitive ligand (Fig. 4). Addition of Hist-5 caused a decrease of the characteristic [Cu(I)(Fz)2]3− absorption bands at 470 and 610 nm, indicating competition between the peptide and Fz for Cu(I). A weak feature observed late in the titration at 568 nm indicates formation of [Fe(II)(Fz)3]4− due to trace iron, as has been observed previously.18 Data were corrected for this contribution. These data show that Hist-5 is the best at competing with Fz for Cu(I), with the truncated peptides retaining Cu(I) binding affinity that varies depending on the presence and position of His residues. Titrations done in both directions (peptide to Cu(Fz)2 and Fz to Cu(peptide) returned similar results (Fig. S2).
Stoichiometry of binding was assessed by fitting titration data to multiple peptide:Cu binding models, including 1:1, 1:2 and 2:1, as shown in Fig. S3, with final log K values tabulated in Table 1. Of the peptides tested, only Hist-5 displayed a 1:2 peptide:Cu(I) binding complex, likely due to the presence of two bis-His motifs, to give an overall log KP:2Cu(I) of 15.4 ± 0.2. A reverse titration of Fz into a 1:1 solution of Cu(I):Hist-5 provided log K1PCu(I) of 7.8 ±0.2 for the first site, allowing for calculation of the second site to be log K2PCu(I) of 7.6 ± 0.3. These similar values correspond to dissociation constants (Kd) for each bis-His Cu(I) site between 16–25 nM.
The truncated peptide Hist 1–12 was best fit by a 1:1 peptide:Cu(I) binding model with an apparent log KP:Cu(I) of 7.1 ± 0.3 (Kd = 79 nM), a value slightly weaker than the individual binding sites of the full-length Hist-5. If this binding site were comprised exclusively of the bis-His motif, H3A would be expected to return a similar value, yet the best fit 1:1 binding model yields a weaker Kd of 200 nM, suggesting that the histidine at the third position facilitates strong Cu(I) coordination at the bis-His site. The importance of maintaining the adjacent His residues for effective Cu(I) binding by histatin peptides is highlighted by the fact that eliminating both of them rendered peptide H7,8A incapable of competing for Cu(I) from Fz, while eliminating just one of them (H7A) gave a peptide that only weakly competes with Fz for Cu(I), and does so by forming a 2:1 peptide:Cu(I) complex.
Overall, these spectroscopic data show that the histidine-rich sequence of Hist-5 supports Cu(I) coordination via its bis-His motifs, with potential contribution from an additional His.
X-ray absorption spectroscopy reveals that His3 is involved in coordination of Cu(I) at the bis-His site
To confirm the presence of a Cu(I) binding site in the histatin peptides, samples of Cu(I) loaded Hist 1–12, H3A, and H7,8A were analyzed using X-ray absorption spectroscopy. Fig. 5a compares the X-ray absorption near edge spectra (XANES) for the three peptide complexes. XANES spectra of Cu are quite sensitive to coordination number and oxidation state, as described by Kau et al.38 In particular, the presence of a prominent 1s-to-4p feature at ~8984 eV (vertical line) and the absence of a 1s-to-3d transition unambiguously indicate that the peptides are all binding Cu(I). The intensity of these features relative to the total edge height is inversely proportional to the coordination number. Two-coordinate near linear geometries typically have intensities equivalent in magnitude to the main edge.38 The Hist 1–12 peptide samples evaluated had amplitudes between 0.6–0.8 relative to the edge that is normalized to 1. Fig. 5a shows the sample with the highest intensity we observed; it has a magnitude between the intensity values reported for pure 2 coordinate (~1.0) and pure 3 coordinate (~0.6) compounds.38 In the compounds evaluated by Kau et al, the only three coordinate complex with a 1s-to-4p transition with this magnitude of 0.8 was a T-shaped coordinate system with short 1.87 Å Cu–N bond lengths. The H3A peptide complexes consistently had a slightly higher amplitude of the edge feature at 8984 eV than did the Hist1–12 peptide complexes. The XANES spectrum for the H7,8A peptide where the bis-His binding site is removed still indicates the presence of Cu(I), but there are clearly structural changes that have occurred relative to Hist 1–12 and H3A. Addition of more equivalents of Cu(I) to any of the peptides dramatically changed the edge structure, indicating that other sites on the peptide may provide additional (possibly adventitious) binding sites for Cu(I) (data not shown). Interestingly, addition of H2O2 to Hist 1–12 results in the loss of the 8984 eV feature and a shift to higher edge energy, indicating that the geometry allows for redox activity (data not shown).
To validate that the Hist 1–12 peptide forms a three coordinate Cu(I) complex, we compared the x-ray absorption fine structure (EXAFS) of Hist 1–12 and H3A. The Fourier transformed (FT) data of both peptides indicate the presence of substantial histidine scatterers, as evidenced by the prominent peaks between 2–4 Å in the FT (Fig. 5b–c). Fits of the Hist 1–12 data indicate the presence of two sub-shells of nearest neighbors, 2 N/O at 1.90 Å and another low-Z ligand at 2.11 Å (Table S1). The disorder of the longer nearest-neighbor subshell is evident in the higher Debye-Waller factor, σ2, but in most categories of fits evaluated, addition of the extra first shell ligand improved the fit and refined consistently to the same value. Addition of shells of scatterers from the carbon/nitrogen in the ordered histidine rings improves the fit (Table S1) and the best five shell fit is shown in Fig. 5b and is indicated in bold on Table S1.
In contrast to Hist 1–12, the H3A peptide can best be fit with just the single short first shell ligand set at 1.90 Å. If an additional sub-shell of nearest neighbors is added to the model, the fit refines with a longer distance (2.3 Å) and an unrealistically high value for the bond disorder. The Cu–N distance still refines to the value of 1.90 Å, indicating that a third ligand, possibly from solvent, is likely present but is not well ordered enough to be refined. The intensity of the pre-edge feature and the first shell distance again suggest that H3A may have a third disordered ligand, though one distinct from that present in Hist 1–12. Pure two coordinate bis-His coordination is expected to yield a slightly shorter Cu–N distance of 1.86–1.88 Å; the edge feature at 8984 eV would also be expected to be more intense.20, 39–40 Other structural changes in the histidine scattering region are evident when comparing the FTs of Hist 1–12 and H3A, suggesting that the His3 may be involved in the binding of Cu(I) in Hist 1–12. Fig. 5c shows the best four shell fit for the H3A peptide, indicated in bold in Table S1.
Metal-binding motifs affect antifungal activity of Hist-5
Antifungal susceptibility assays were performed to evaluate the effect of supplemental Cu(II) and Fe(III) on the antifungal activity of Hist-5. The C. albicans yeast cells treated with Hist-5 alone exhibited an EC50 of 5.15 µM (Fig. 6a, black bars), while co-treatment with 100 µM FeCl3 rendered Hist-5 ineffective at inhibiting growth (Fig. 6a, red bars). In fact, low µM Fe(III) was sufficient to cause a decrease in activity (Fig. 6b and S6). Contrary to Fe(III), the addition of CuSO4 caused a decrease in EC50 of Hist-5 to 1.36 µM (Fig. 6a, blue bars). Low µM concentrations of added Cu(II) were sufficient to cause a decrease in EC50 (Fig. 6b and S5). Neither Cu(II) nor Fe(III) by themselves inhibited growth of C. albicans in the concentration range tested (0–100 µM; Fig. S4a–b). It is worth noting that increasing concentrations of both of these metal ions increased the lag phase of C. albicans, as expected for a change in growth environment that includes high metal levels.41 Taken together, these metal supplementation data reveal that Fe and Cu both potentiate the antifungal activity of Hist-5, but in opposite directions, with Fe abrogating activity and Cu facilitating activity.
To evaluate the relevance of the Cu-binding sites on antifungal activity, a series of mutant full-length Hist-5 peptides were tested (Table 2). Replacement of the ATCUN or either of the two bis-His motifs caused an increase in the EC50 to 15.8, 13.0 and >100 µM (Hist-5(H3A), Hist-5(H7,8A), and Hist-5(H18,19A), respectively). Co-treatment with Fe(III) inhibited the antifungal activity of all the full-length mutants, as observed with Hist-5. Contrary to Fe(III), supplementing with Cu(II) caused a decrease in EC50 values for Hist-5(H3A) and Hist-5(H18,19A) to be ~5.00 and 1.35 µM, respectively. Strikingly, Hist-5(H7,8A) remained ineffective at all concentrations tested, even with Cu treatment. Whereas loss of the H18,H19 bis-His site only mildly modulates antifungal activity compared to Hist-5, the complete loss of activity for the mutant lacking H7,H8 emphasizes the importance of the bis-His motif most proximal to the ATCUN motif. Furthermore, Hist-5(H18,19A) exhibits a similar EC50 upon Cu treatment to that of Hist-5, therefore suggesting the importance of the most proximal bis-His site in Cu-potentiated activity.
Table 2. EC50 values for Hist-5, full-length mutants, and truncated peptides against yeast morphotype of C. albicans under metal supplemented and depleted conditions.
Peptide | EC50 (µM) | ||||
---|---|---|---|---|---|
| |||||
No Supplement | + 100 µM Cu(II)SO4 |
+ 2 mM BCS | + 100 µM Fe(III)Cl3 |
+ 0.25 mM EDTA | |
| |||||
Hist-5 | 5.15 ± 0.03 | 1.36 ± 0.02 | >100 | >100 | 22.5 ± 0.1 |
Hist-5(H3A) | 15.8 ± 0.04 | 5.00 ± 0.01 | >100 | >100 | >100 |
Hist-5(H7,8A) | >100 | >100 | >100 | >100 | >100 |
Hist-5(H18,19A) | 13.0 ± 0.01 | 1.35 ± 0.09 | >100 | >100 | >100 |
Hist 1–12 | >25 | 4.74 ± 0.02 | >100 | >100 | >100 |
H3A | >25 | 6.16 ± 0.04 | >100 | >100 | >100 |
H7A | >25 | 14.06 ± 0.05 | >100 | >100 | >100 |
H7,8A | >25 | >25 | >100 | >100 | >100 |
Unlike the full-length peptides, none of the truncated peptides alone exhibited an EC50 below 25 µM (Table 2). Co-treatment with Fe(III) did not have any observable effect on growth, which is not surprising given that they were not active on their own at the concentrations tested. Interestingly, however, co-treatment of peptides with Cu(II) revealed EC50 values for Hist 1–12, H3A and H7A to be ~5, 6, and 14 µM, respectively. Peptide H7,8A, on the other hand, remained ineffective at all concentrations tested, regardless of Cu treatment. The minimal difference in EC50 for Hist 1–12 compared to H3A suggests that His3 is not critical for antifungal activity. The finding that H7A is less effective and H7,8A is completely ineffective suggests the importance of an intact bis-His motif for the Cu-dependent antifungal activity of the truncated Hist-5 peptides. The results obtained with the truncated peptides uphold the results obtained with the full-length mutant peptides, further suggesting the importance of the bis-His motif for the Cu-dependent antifungal activity of Hist-5.
The metal dependence of Hist-5 antifungal activity was further tested by co-treating cells with peptides and either bathocuproine disulphonate (BCS), a cell impermeable chelator frequently used to limit Cu availability in cell culture, or ethylenediaminetetraacetic acid (EDTA), a general metal ion chelator. Initial susceptibility testing of the ligands alone showed that concentrations at or below 2 mM BCS and 0.25 mM EDTA were well tolerated by C. albicans (Figs. S4). Co-treatment with peptides and 2 mM BCS completely abrogated the growth inhibitory activity of Hist-5 (Fig. 6a, purple bars), whereas 0.25 mM EDTA caused an increase in EC50 to 22.5 µM (Fig. 6a, green bars). These results bolster the Cu-supplementation results and further support the concept that Cu availability influences the antifungal activity of Hist-5.
To buttress the assumption that the effect of BCS on the antifungal activity of Hist-5 is due to BCS competing with Hist-5 for binding Cu, a solution of 7 µM Hist-5 and 7 µM CuSO4 was prepared in YPD medium and incubated with varying concentrations of BCS for 1 h. As observed in Fig. 7, the characteristic Cu(II)-ATCUN absorption feature (~ 530 nm) was not detected at the concentration analyzed of the Cu-bound Hist-5 complex. Addition of BCS resulted in the dose-dependent formation of an absorption band ~ 483 nm (ε = 13,300 M−1cm−1),42 indicative of the [Cu(BCS)2]3− complex. At 2 mM BCS, the calculated concentration of [Cu(BCS)2]3− complex based on its absorbance at 483 nm was 7.3 µM. This concentration matches the 7.0 µM Cu added in solution together with basal Cu concentration of the YPD media (0.27 ± 0.04 µM, as determined by ICP-MS) indicating that all Cu has been reduced and sequestered as the Cu(I)-BCS complex. These results corroborate that under the 2 mM BCS conditions used in the antifungal assays, Cu is not available to Hist-5.
In order to test the fungicidal activity of Hist-5, C. albicans were incubated overnight in YPD (normal protocol) or in YPD supplemented with 100 µM CuSO4 or 2 mM BCS. ICP-MS was used to verify the cell-associated Cu content for each of the conditions. Cells grown under these basal, Cu-replete or Cu-depleted conditions (1, 126 and 0.3 Cu/mg P, respectively) were then washed to remove the treatments before exposure to Hist-5 alone or with 2 mM BCS for 1.5 h in buffer before plating on fresh agar and grown overnight. As shown in Fig. 8b, this killing assay (spot test) confirmed that Hist-5 is fungicidal above 6 µM, whereas co-treatment with BCS prevented the fungicidal activity (Fig. 8b, II vs. I). Notably, the Cu content for cells grown under these conditions were the same, within error (Fig. 8a, II vs. I). Cells grown overnight with BCS, however, showed a 70% decrease in cell-associated Cu compared to the basal level (0.308 vs 1.0 nmol Cu/mg P, respectively). Under these conditions, Hist-5 was not fungicidal at the concentrations tested, although growth was lower compared to BCS co-treatment condition (Fig. 8b III vs. II). In contrast, cells grown under Cu-replete conditions were sensitized to Hist-5 toxicity (Fig. 8b, IV). Taken together, these data support a model in which Hist-5 uses available Cu to enhance its fungicidal activity. Hist-5 may acquire its Cu cofactor from trace Cu in surrounding medium, supplemental Cu intentionally added, or cell-associated Cu.
Discussion
Hist-5 has been previously shown to have metal binding capabilities, including for Cu(II). Yet the relevance of Cu binding to Hist-5 antifungal activity has not previously been established and biological and spectroscopic evidence to support claims of metal-associated activity are lacking. The work presented here provides evidence that the histidine-rich sequence of Hist-5 confers the salivary peptide with high affinity for Cu in both Cu(I) and Cu(II) oxidation states. X-ray absorption spectra indicate that both Hist 1–12 and H3A bind Cu(I) using the bis-His binding site, as evidenced by substantial histidine scattering in the EXAFS and by the prominent pre-edge feature that results from a 1s-4p transition in Cu(I). Most importantly, the antifungal data collected on full-length Hist-5 and several His-to-Ala mutant and truncated peptides provides the first evidence that links the Cu binding capability of histatin peptides with their antifungal activity against C. albicans.
Competition titration data indicated that Hist-5 binds Cu(II) in an ATCUN site with apparent KHist-5-Cu(II) of approximately 1011 (Kd ~ 8 pM). This affinity for Cu(II) is significantly higher than the value previously reported for Cu(II) binding to Hist-5 (KHist-5-Cu(II) = 2.6 × 107),15 however it is more in line with the value that would be expected based on similar analysis of ATCUN sites in human albumin (Kalbumin-Cu(II) = 1012)33 and models of the human copper transporter (Ctr1, KCtr1-Cu(II) = 1011).19 Our results are in significant disagreement with Gusman et al, and we suggest that the conditional nature of the reported values and the difference in methodology can explain why these values differ by approximately four orders of magnitude. The competition equilibrium methodology used here minimizes many of the problems that can plague the determination of metal-protein affinities, including metal hydrolysis and binding to adventitious sites and buffer components.37 Gusman et al employed isothermal titration calorimetry in cholamine chloride buffer in determining KHist-5-Cu(II). Cholamine chloride is a Good’s buffer, however Good’s buffers are not completely innocent in interactions with all metal ions.43 Cholamine chloride has a primary amine functional group capable of significant interaction with Cu(II), and to our best knowledge, the interactions of this buffer with Cu(II) have not been characterized. HEPES buffer is also a Good’s buffer that is non-innocent in its interactions with Cu(II), but it is recommended43 for study of Cu(II) interactions with biological ligands because interactions between Cu(II) and HEPES are fully characterized.44 HEPES is the buffer that was used here, and in the determination of Cu(II) affinity with albumin and Ctr1 referenced above.19, 33 We note that the reported value for albumin is a conditional constant in which contributions of HEPES buffer interactions with Cu have been accounted for. However, in the case of the reported values for Cu(II) binding to Ctr1 model peptide, and here for Hist-5, HEPES buffer contributions are ignored. Thus, although these three ATCUN-containing polypeptides were examined under similar conditions, the values for Hist-5 and Ctr1 model peptides can be directly compared, but should not be directly compared to that of albumin. If buffer contributions are accounted for in the latter two cases, all three systems retain nearly identical affinities.44 The comparable affinities of Hist-5 and other ATCUN-Cu(II) peptides and proteins suggests that Hist-5 would be capable of competing with Cu(II) binding proteins in saliva, which include albumin.
While Cu would not be expected to exist extracellularly as Cu(I), the presence of reductants or any redox cycling of Cu-bound histatin would provide sources of Cu(I). Our results indicate that the bis-His motifs contribute to moderate, nanomolar affinity of histatin peptides for Cu(I). Bis-His sites have been shown to bind Cu(I) in other systems, including amyloid-β, with ~130 nM affinity,18 and model peptides of the copper transport protein, human Ctr1, with sub-nanomolar affinity.39, 45 Additional Met or His ligating residues were postulated to complement the bis-His Cu(I) binding site in the human Ctr1 peptides and the data here also suggest that additional ligating residues may complement the bis-His site in histatins.
Indeed, fits to Hist 1–12 indicate that a third ligand is present as a nearest neighbor. The 1.90 Å distance refined for the bis-His Cu–N distances is slightly outside the normal window for pure two coordinate bis-His binding.20 EXAFS distances do have an uncertainty of ± 0.02 Å due in part to the strong correlation of distance with the chosen value of E0, the threshold energy; this leaves open the possibility that our longer distance is, within the error of the measurement, indicative of a two-coordinate complex. However, we note that ΔE0 must be forced to an unusually high value in order to tweak the distance down to 1.88 Å in a fit; these high ΔE0 values are inconsistent with both our own calibration of ΔE0 values and those reported by others using the same modeling programs.39 In addition, the magnitude of the 1s-to-4p transition at ~8984 eV ranges from 0.6 to 0.8 in the samples we evaluated and these magnitudes are more indicative of a three coordinate Cu(I) complex.38 Two coordinate Cu(I) bis-His ligation in Amyloid-β peptide fragments and human prion protein fragments both refined to shorter Cu–N distances (1.88 Å) and typically have higher pre-edge intensities.20, 39–40 Finally, if the coordination of Cu(I) in Hist 1–12 and H3A were only reliant on the two adjacent His residues as ligands, then we would expect the EXAFS spectra of these peptides to be identical, and they are not. There are in fact subtle changes in the EXAFS both in the first shell and in the outer shells where histidine backscattering predominates. For H3A, the third ligand is very disordered and a clean minimum cannot be found for this subshell with the fits. In addition, there are visible changes associated with the histidine peaks in the FT when His3 is absent. The structural differences apparent in the EXAFS for Hist 1–12 and H3A and the binding differences evident in the Kd values suggest that the third ligand for Hist 1–12 may be provided by His3.
The spectroscopic results illustrating the strong binding affinity of Hist-5 for Cu(I) and Cu(II) raise the question of whether Cu plays a role in its activity. We therefore speculated that the antifungal activity of Hist-5 may be modulated by the availability of metals in general, and copper specifically.46–48 Indeed, the presence or absence of Cu(II) and Fe(III) dramatically affected the activity of Hist-5 and its derivatives against C. albicans. The loss of Hist-5 antifungal activity in the presence of Fe(III) confirmed prior reports.22 Interesting to us, however, was the improvement in candidacidal activity of Hist-5 supplemented with Cu, shifting the EC50 from 5.15 µM to 1.36 µM. Conversely, inclusion of the extracellular copper chelator BCS completely rescued Candida growth at otherwise inhibitory concentrations of Hist-5.
The Cu-modulated activity of Hist-5 has several possible explanations. The apparent Cu-facilitating activity could be a coincidental result of Hist-5 and Cu levels affecting different but interconnected cellular processes. Alternatively, Hist-5 and Cu could directly interact to create a toxicity-inducing complex. The observation that antifungal activity of the “mutant” peptides correlated with their physical ability to bind Cu(I) provides some evidence favoring a direct interaction. Basal levels of Cu in the growth medium or in situ may supply Hist-5 with sufficient Cu cofactor for activity. The observation that cells cultured in Cu-replete medium were sensitized to Hist-5 activity supports this idea (Fig. 8b). Alternatively, Hist-5 may have both Cu-dependent and independent mechanisms of action. Cu supplementation may boost a Cu-dependent mechanism, thus a decrease in EC50.
The lack of Hist-5 candidacidal activity observed when co-treated with BCS would seem to favor a Cu-dependent mechanism. However, an alternative explanation could be that C. albicans undergoes metabolic adaptations to a Cu deprived environment created by BCS that reduces its susceptibility to Hist-5. Cu deficiency is known to limit fungal cell growth and leads to down-regulation of respiratory function, presumably to preserve Fe and Cu for the most critical cellular processes.49 In addition, Cu limitation inhibits cytochrome oxidase expression, thereby limiting mitochondrial respiration.50–51 It has been shown that anaerobic conditions and metabolic inhibitors protect C. albicans against Hist-5.13 Therefore, BCS may be reducing or inhibiting respiratory function by depleting Cu, thereby rendering Hist-5 ineffective.52 The results of the ICP-MS and spot assay in Fig. 8a,b, however, showed that exposure to 2 mM BCS for 1.5 h does not deplete cellular Cu levels, but does abrogate activity of Hist-5, suggesting that cellular Cu-deficiency itself is not the primary driver behind the effect of BCS on Hist-5 activity. Consistent with the results from Fig. 6, the effect of BCS was most pronounced when cells were exposed to Hist-5 and BCS at the same time, suggesting that BCS diminishes Hist-5 activity by withholding or competing Cu away from a direct interaction with Hist-5, as observed in Fig. 7. Combined, these results support a model that invokes Cu as a cofactor necessary for optimal antifungal activity of Hist-5.
Several studies have explored amino acid sequence requirements for the antifungal activity of Hist-5.8, 25, 53–59 Among a series of histatin fragments, C-terminal peptides with chain lengths greater than 14 residues were found to retain activity similar to full length Hist-5, while N-terminal fragments were less active.8 Among other variations in experimental design, that study did not test the effect of Cu or other metals on activity, although all of the active fragments did contain at least one bis-His motif. In the current study, we also found that N-terminal fragments showed diminished activity, in fact, a maximum concentration of 100 µM Hist 1–12 failed to inhibit the growth of C. albicans. However, addition of Cu restored activity of Hist 1–12 to levels approaching full-length Hist-5. Furthermore, we found that mutating the H7,H8 bis-His site of the full-length Hist-5 mutant rendered the peptide ineffective, whereas eliminating H18H19 bis-His site retained activity. Based on our series of N-terminal truncated and full-length mutant peptides, Cu-dependent activity depends on a bis-His motif, particularly the H7H8 site, but not an ATCUN site.
Bis-His motifs are commonly found in biological systems, and have been observed to bind Cu(I) in a linear fashion, while also accommodating an additional ligand. The coordination motif has been shown to grant Cu(I)-bis-His complexes with O2 reactivity, leading to the generation of ROS.20, 39–40, 60 Our XAS results corroborate a similar Cu(I)-coordination mode by the histatin-derived peptides, suggesting that the Cu(I)-histatin complex could potentially mediate Cu-induced ROS, which in turn could elicit fungal killing. Altogether, the XAS and antifungal assay results suggest that the bis-His site may not only serve as a primary anchor for Cu(I) binding, but, once bound to Cu(I), may also be directly responsible for the antifungal activity of Histatin-5. This speculation will require further experimental testing.
The results here provide evidence that Cu contributes to the antifungal activity of histatin peptides, but how Cu contributes to its mechanism of action remains an open question. Perhaps its ability to stabilize both Cu(I) and Cu(II) endows it with unique redox properties,45 a hypothesis we are currently exploring.
Experimental Section
Peptide synthesis and purification
All peptides were synthesized on a Protein Technologies PS3 automated peptide synthesizer using Fmoc-L-Tyr(tBu)-Wang or rink amide MBHA resins (Chem-Impex Int’l Inc.) in 0.1 mmol scale. Amino acid coupling was achieved using HBTU (O-benzotriazole-N,N,N’,N’-tetramethyluronium hexafluorophosphate; Chem-Impex Int’l Inc.) in the presence of N-methylmorpholine in N,N’-dimethylformamide (DMF) for 30 min cycles. Fmoc deprotection was accomplished with the use of 20% piperidine in DMF. Side chain deprotection and peptide cleavage from the resin were achieved by treating with 5 mL of a solution of 95% trifluoroacetic acid (TFA), 2.5% ethane dithiol, and 2.5% triisopropylsilane (TIS, Sigma-Aldrich) for 4 h under N2 gas to yield peptides with N-terminal free amines and C-terminal carboxylic acids for Hist-5 and C-terminal amide for model peptides. A continuous flow of N2 gas was used to evaporate TFA to a volume of 2 mL. Afterwards, peptide was precipitated and washed three times with diethyl ether (Sigma-Aldrich), and left to air-dry. Peptides were purified using semi-prep reverse-phase HPLC on a C-8 column with a 40 min linear gradient from 3–97% acetonitrile in water, with 0.1% TFA. Purity was validated to >95% by analytical HPLC, and the masses of the peptides were confirmed by ESI-MS. Hist-5 calculated for 3036.3: Found (M+2H+) 1518.2. Hist-5(H3A) calculated for 2970.2: Found (M+2H) 1483.1. Hist-5(H7,8A) calculated for 2904.1: Found (M+2H) 1452.3. Hist-5(H18,19A) calculated for 2904.1: Found (M+2H) 1452.1. Hist 1–12 calculated for 1490.6: Found (M+H+) 1490.7. H3A calculated 1424.6: Found (M+H+) 1424.6. H7A calculated 1424.6: Found (M+H+) 1424.9. H7,8A calculated 1358.5: Found (M+H+) 1359.1.
Preparation of stock solutions
Peptide stock solutions were prepared by dissolving lyophilized peptide in 1 mL of nanopure water. Concentration of stock solutions was determined using the Edelhoch method.61 In short, 4–6 µL of peptide stock were diluted into 400 µL of 8 mM urea to obtain an absorbance at 280 nm between 0.1 and 1 absorbance unit. The concentration of the peptide solution was determined from the A278nm readings using an extinction coefficient of 1450 M−1cm−1 for each tyrosine.62 Peptide stock solutions were stored in sealed cryogenic storage vials. Copper(II) stock solutions were prepared by dissolving copper sulfate (CuSO4, Sigma) in nanopure water and standardized by EDTA titration in an ammonium buffer to a murexide endpoint. Copper(I) solutions were prepared by dissolving [Cu(CH3CN)4]PF6 (Aldrich) in anhydrous acetonitrile (Fisher) and subsequently standardized with the use of the chromophoric ligand bicinchoninate (BCA). The concentration of Cu(I) solutions was determined from the absorption at 563 nm due to the Cu(I)(BCA)2 complex (ε = 7900 M−1 cm−1).63
UV-Vis spectroscopy
Absorption spectra were recorded in 1-cm quartz cuvettes on a Varian Cary 50 UV-Visible spectrophotometer for studies with Cu(II). All spectrophotometric experiments using Cu(I) were conducted on an SI Photonics model 420 fiber optic CCD array spectrophotometer located inside a Siemens MBraun glove box under inert N2 atmosphere.
Determination of peptide-copper binding constants
Apparent association constants for Cu(I/II) binding were determined in 50 mM HEPES buffer at a pH of 7.4, as described in the Supp. Info. The association constants were determined by fitting the adequate binding equilibrium models using GraphPad Prism software.64
Cu(II) apparent binding constants
Nitrilotriacetic acid (NTA) was used as a competitive ligand to obtain apparent binding constants for peptide–Cu(II) complexes in 50 mM HEPES buffer, pH 7.4 from spectrophotometric titration data. Aliquots (0.75 µL) of peptide stock solution were titrated into solutions containing 1 mM NTA and 0.8 mM CuSO4 to establish the exchange equilibrium expressed by Eq. 1 below (derived from the competing equilibria expressed in Eqs 3–6. The concentration of NTA(Cu(II)) at each point in the titration was calculated from the characteristic visible absorbance of NTA(Cu(II)) at 800 nm (ε = 64 M−1 cm−1). Reverse titrations were also carried out by titrating NTA into solutions containing peptide and CuSO4. Calculations of the other species present in solution were calculated from mass-balance equations. Data plotted as [NTA(Cu(II))] vs. [peptide]total were fit to the equilibrium model shown in Eq. 2 using GraphPad Prism software64 to obtain Kex. The desired KP(Cu(II)) was then calculated from Eq. 2 using the known value for NTA (log KNTA(Cu(II)) = 10.68, pH 7.4).65 Log K values shown in Table 1 represent the average and standard deviation obtained from triplicate titration experiments.
(1) |
(2) |
(3) |
(4) |
(5) |
(6) |
Cu(I) apparent binding constants
All experiments with Cu(I) were performed in a N2-filled anaerobic glove box. All buffers and reagents were degassed under N2, sealed and transferred to the glove box. Ferrozine (Fz) was used as a competitive ligand to calculate apparent binding constants for peptide–Cu(I) complexes in 50 mM HEPES buffer, pH 7.4 from spectrophotometric titration data. Aliquots (2.75 µL) of peptide stock solution were titrated into solutions containing 132 µM Fz and 55 µM Cu(CH3CN)4PF6 to establish the exchange equilibrium expressed by Eq. 7 below (derived from the competing equilibria expressed in Eqs 8–12. The concentration of Cu(Fz)2 complex at each point in the titration was calculated from its characteristic visible absorbance at 470 nm (ε = 4,320 M−1 cm−1).18, 66 Calculations of the other species present in solution were calculated from mass-balance equations. Data plotted as [Cu(Fz)2] vs. [peptide]total were fit to equilibrium models shown in Eq. 2 using GraphPad Prism software64 to obtain Kex. In Eqs. 7–14, m and n stand for the stoichiometric values for the component, which varies depending on the binding model. The desired KP(Cu(II)) was then calculated from Eq. 2 using the known value for Fz (log KFz2Cu(I)) = 11.56, pH 7.4).18
(7) |
(8) |
(9) |
(10) |
(11) |
(12) |
Correction for [Fe(II)(Fz)3]4− formation
Contributions to the absorbance at 470 nm due to the formation of [Fe(II)(Fz)3]4− were determined and corrected by using Eqs. 13 and 14, as previously described.18 [Fe(II)(Fz)3]4− exhibits an absorption maxima at 568 nm (ε = 25,000 M−1 cm−1), and around 470 nm (ε = 8,600 M−1 cm−1; absorption maxima of [Cu(I)(Fz)2]3−). The ε values for [Cu(I)(Fz)2]3− at 470 nm and 568 nm are 4,320 M−1 cm−1 and 2,600 M−1 cm−1, respectively.18
(13) |
(13) |
EXAFS data collection and analysis
All EXAFS samples were prepared in a nitrogen-filled anaerobic glovebox, and with degassed buffers and reagents. Solutions of Cu(I) with Hist 1–12, H3A, or H7,8A peptides (1 mM peptide, 0.9 mM Cu(CH3CN)4PF6; 50 mM HEPES, pH 7.4, 30% v/v glycerol) were loaded into a lucite EXAFS sample cell wrapped in Kapton tape and flash frozen in liquid nitrogen. Spectra were collected at the Stanford Synchrotron Radiation Laboratory, beamline 9-3. The SSRL storage ring was operating at 3 GeV in top off mode with a ring current of 500 mA. Beamline 9-3 uses a focusing mirror, has Si(220) monochromator crystals, and a 13 keV energy-cutoff mirror was used to reject harmonics. Copper fluorescence was detected with a Canberra 100 element germanium detector. Samples were maintained at 10 K in an Oxford liquid helium continuous flow cryostat. A 6 micron nickel filter with a Soller-slit assembly was placed between the cryostat window and the detector to reduce scatter. The energy was calibrated by simultaneously measuring the edge spectrum of a copper foil, with the energy of the rising inflection point being assigned as 8980.3 eV. Data were analyzed using EXAFSPAK67 interfaced with FEFF 7.068 for theoretical phase and amplitude functions. Single scattering models were used. ΔE0 and scale factor were set at −14 eV and 1.0 respectively, based on previous calibration to fits on model complexes.69 The data were fit over a k range of 1–13 Å−1 without the use of any Fourier filtering or smoothing. Spectra represent the average of 5–6 scans. The beam position was moved every 1–2 scans to a fresh unexposed area on the sample face to mitigate x-ray damage to the sample. The goodness of fit was evaluated using the F factor (a least-square deviation between data and fit) scaled for the number of variable parameters used in the fit (F’ in Table S1). [A] the Cu-ligand distance, R, and the Debye-Waller factor, σ2, were varied unconstrained for each shell in the fits. Coordination number was varied incrementally but was not freely varied in the fits.
Antifungal assays
A previously published method3 was modified to accommodate a 96-well plate format. In short, C. albicans (ATCC, SC5314) cells were streaked on YPD agar plates and incubated at 30 °C for 24 h. Individual yeast colonies were subsequently picked from the plate, suspended in YPD medium and incubated for 16 h (logarithmic growth phase) at 30 °C. These yeast cell cultures were then diluted into 1 mM potassium phosphate buffer (PPB), pH 7.0, to an optical density at 600 nm (OD600) of 0.07 and dispensed into wells of a 96-well plate that contained test peptides dissolved in 1 mM PPB at desired concentration ranges, with or without added metal salts or chelating agents. After incubating for 1.5 h at 37 °C with shaking (200 rpm), 10-µL aliquots of each well were added to a new 96-well plate containing 190 µL fresh YPD medium in each well. Finally, the latter plate was incubated for 48 h at 30 °C with shaking (200 rpm) prior to reading final OD600.
Spot Assay
Individual yeast colonies were picked from a YPD agar plate, suspended in YPD medium supplemented with 100 µM CuSO4, 2 mM BCS, or no treatment, and incubated to logarithmic growth phase at 30 °C. These yeast cultures were then washed, resuspended and diluted to an OD600 of 0.07 with 1 mM PPB (pH 7.0), and dispensed into wells of a 96-well plate that contained test peptides dissolved in 1 mM PPB at desired concentration ranges. After incubating for 1.5 h at 37 °C with shaking (200 rpm), 4 µL aliquots of each well were spotted onto a YPD agar plate and incubated for 48 h at 30 °C.
ICP-MS Analysis
Overnight cultures were prepared as described above for each testing condition and grown for 16 h. 1 mL of the overnight culture was collected and transferred to an acid washed container. Cells were then washed once in PBS buffer and twice in 1 mM EDTA to remove cell surface-associated metals by centrifugation at 3000 rpm for 5 min. After washing, the cell pellets were dried at 75 °C overnight, digested in 200 µL of TraceMetal grade nitric acid (Fisher) for 30 min at 85 °C, and diluted with 200 µL of nanopure water that had been treated with Chelex resin to minimize metal contamination. Samples were analyzed using a Perkin Elmer Elan DRCII spectrometer by Mrs. Kim Hutchison at the Department of Soil Science of North Carolina State University. The data was normalized to the phosphorous content of each sample. Samples were done in triplicates.
Supplementary Material
Acknowledgments
S.E.C. and K.J.F. thank the NIH for supporting this work (GM084176 and GM084146-S1). S.E.C. would like to thank Duke University BioCoRE (R25-GM103765) for funding. E.B. acknowledges support from Helen Kuhn Carey and the Department of Chemistry and Physics Saint Mary’s College, Notre Dame, IN. K.L.H. acknowledges support from a 2016 Cottrell Scholar Award from RCSA, a New Faculty Grant from Lilly Inc, and a CFAI Faculty Research Award from Saint Mary’s College. P.R.G. acknowledges the U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences (under Contract No. DE-AC02-76SF00515) for the use of the Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory. P.R.G. also acknowledges the DOE Office of Biological and Environmental Research and the National Institutes of Health, National Institute of General Medical Sciences (including P41GM103393) for supporting the SSRL Structural Molecular Biology Program. The contents of this publication are solely the responsibility of the authors and do not necessarily represent the official views of NIGMS or NIH.
ABBREVIATIONS
- Hist-5
Histatin-5
- ATCUN
amino terminal Cu(II) Ni(II) binding motif
- ROS
reactive oxygen specie
- NTA
nitrilotriacetic acid
- Fz
ferrozine
- XAS
x-ray absorption spectroscopy
- BCS
bathocuproine disulphonate
- EDTA
ethylenediaminetetraacetic acid
- PPB
potassium phosphate buffer
- ICP-MS
inductively coupled plasma mass spectrometry
Footnotes
ASSOCIATED CONTENT
Additional spectrophotometric assays, table of XAS structural results, antifungal susceptibility assays, and equations used for calculation of apparent binding constants. The Supporting Information is available free of charge on the ACS Publications website.
The authors declare no competing financial interests.
References
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