Critically dysregulated signaling pathways and clinical utility of the pathway biomarkers in lymphoid malignancies

Abstract

Accumulating evidence confirmed that many dysregulated signaling pathways and aberrant genetic alterations contribute to the oncogenesis and heterogeneity of lymphoid malignancies. Therapeutically targeting dysregulating signaling pathways and their hidden oncogenic biomarkers are becoming available, but did not show desired therapeutic effect in current clinical practice. It is meaningful to further understand the underlying mechanisms of the dysregulated signaling pathways and to address the potential utility of pathway-related biomarkers. To precisely identify the dysregulation of signaling pathways and the “driver” oncogenic biomarkers, as well as to develop reliable and reproducible risk-stratification based on biomarkers will be challenging. Nevertheless, pathway-based targeted therapy will raise the hope to improve the outcomes of the patients with lymphoid malignancies, especially with aggressive types, and the efficient utility of pathway-related biomarkers in diagnosis, prognosis, prediction of lymphoid malignancies may also be able to power precision medicine.

Introduction

Lymphoid malignancies are known for a wide variety of types and molecular and clinical heterogeneity. Increasing evidence supported that many dysregulated oncogenic signaling pathways and aberrant genetic alterations have contributed to the oncogenesis and heterogeneity.1, 2 The most frequently dysregulated signaling pathways involved in lymphoid malignancies include B-cell receptor (BCR) pathway, nuclear factor-kappa B (NF-κB) pathway, phosphoinositide-3-kinase/v-akt murine thymoma viral oncogene homolog/mechanistic target of rapamycin (PI3K/AKT/mTOR) pathway, the Janus kinase/signal transducer and activator of transcription (JAK/STAT) pathway, apoptosis pathway, and programmed death-1/programmed death-ligands (PD-1/PD-Ls) pathway.

In the current era of precision medicine, therapeutically targeting dysregulated signaling pathways and their hidden oncogenic biomarkers are becoming hot topics in the field of cancer research and translational medicine worldwide. Meanwhile, progress has been made in risk-stratification of patients based on the targeted biomarkers, accordingly providing optimal intervention for different risk groups. Many preclinical and clinical trials demonstrated that targeted therapies have clinical activity against a broad spectrum of lymphoid malignancies.3, 4

In this review, to comprehensively understand the detailed mechanisms underlying the development of lymphoid malignancies and the potential of targeted therapy, we summarized several key dysregulated signaling pathways involved in oncogenesis and heterogeneity of lymphoid malignancies. The utility of pathway-related biomarkers for diagnostic, predictive, and therapeutic usage is also included.

BCR signaling pathway

BCR is a transmembrane receptor whose membrane-bound immunoglobulin can bind to extracellular antigen. Correspondingly, immunoglobulin-linked heterodimer of cluster of differentiation (CD)79A/CD79B can deliver the antigen stimulatory signals from outside to inside the cell. Following a series of molecules activation, BCR signaling and its downstream signaling cascades consequently control precise function of normal B cells.⁵

In the three BCR signaling pathways (Fig. 1), the chronic active BCR signaling pathway is classical and antigen-dependent. With the antigen-mediated BCR clustering towards cell membrane, the cytoplasmic tail of BCR, especially immune receptor tyrosine-based activation motifs (ITAM) domain of CD79A and CD79B, becomes phosphorylated by Src family members. Being subsequently recruited and activated by phosphorylated ITAM, spleen associated tyrosine kinase (SYK) thereby activates downstream signals including PI3K/AKT/mTOR signaling, mitogen-activated protein kinase (MAPK) signaling, NF-κB signaling, and nuclear factor of activated T cells (NF-AT) signaling through phosphorylating bruton tyrosine kinase (BTK) and B-cell linker (BLNK). As linker molecules, AKT and BTK are key components to deliver multiple signals.2, 6

Fig. 1.

Illustration of cross-communication network of BCR, PI3K, apoptosis, and NF-κB signaling pathways. BCR, PI3K/AKT/mTOR, apoptosis, and NF-κB signaling pathways are independent but interconnected and may form complex crosstalk network. One pathway may act as upstream or downstream of other pathways and some molecular targets function as key points and players involved in several pathways. These key molecules have been shown promise to be a good therapeutic target for effective treatment in lymphoid malignancies. The green arrows indicate direction of activating signaling steps; the red bars indicate inhibitory signaling steps. AKT: v-akt murine thymoma viral oncogene homolog; ARF: alternative reading frame; AP-1: activator protein-1; BAFF-R: B-cell activating factor receptor; BAX: BCL2-associated X protein; BCL: B-cell leukemia/lymphoma; BCR: B-cell receptor; BID: BH3 interacting death agonist; BTK: Bruton's tyrosine kinase; CARD11: caspase recruitment domain family, member 11; CD: cluster of differentiation; EBV: Epstein–Barr virus; FADD: Fas associated via death domain; FasL: Fas ligand; IKK: IκB kinase; IκB: inhibitor of nuclear factor κB; MALT1: mucosa-associated lymphoid tissue lymphoma translocation protein 1; MAPK: mitogen-activated protein kinase; MAPKK: mitogen-activated protein kinase kinase; MAPKKK: mitogen-activated protein kinase kinase kinase; MDM2: mouse double minute-2 homolog; mTOR: mechanistic target of rapamycin; MYD88: myeloid differentiation primary response 88; NEMO: NF-κB essential modifier; NFAT: nuclear factor of activated T-cells; NF-κB: nuclear factor kappa B; NIK: NF-κB-inducing kinase; PI3K: phosphoinositide-3-kinase; PTEN: phosphatase and tensin homolog; STAT: signal transducer and activator of transcription; SYK: spleen associated tyrosine kinase; tBID: truncated BID; TCR: T-cell receptor; TLR: Toll-like receptor; TNF: tumor necrosis factor; TNFR1: tumor necrosis factor receptor 1; TRADD: TNFRSF1A associated via death domain.

The tonic BCR signaling pathway and autonomous BCR signaling pathway exist, depending on the interaction between BCR and Lyn/SYK or the two neighboring BCRs rather than external antigenic stimulation.⁶

Normal BCR signaling has been proven to be functional in B-cell proliferation, survival, apoptosis, and differentiation; aberrantly activated BCR pathway is related to oncogenesis of several types of B-cell hematologic malignancies, especially in chronic lymphocytic leukemia/small lymphocytic lymphoma (CLL/SLL), active B-cell-like diffuse large B-cell lymphoma (ABC-DLBCL), and mucosa associated lymphoid tissue (MALT) lymphoma.2, 7 Furthermore, several key components in these pathways are potential therapeutic targets or diagnostic biomarkers.

CD79A/B

CD79A, a transmembrane protein with a cytoplasmic ITAM, forms a CD79A/B heterodimer with CD79B, which is required for the BCR aggregation to induce signal-initiating. In about 20% of ABC-DLBCL cases, CD79A and CD79B mutations can be observed, suggesting their oncogenic roles in dysregulation of BCR signaling pathway in specific ABC subtype.⁷

BTK

BTK is fundamental to the function of BCR signaling pathway and its downstream signaling. As a member of Tec family, BTK is by far the most studied cytoplasmic tyrosine kinase. It is restrictedly expressed in B cells and plays an important role in the differentiation and activation of B cells.⁸ It is also related to immune function, transcription regulation, and apoptosis modulation due to its function in Toll-like receptor (TLR) pathway and cytokine receptor signaling pathway.⁹ In BCR signaling pathway, BTK is responsible for receiving signals from SYK and transducing signals to initiate downstream signaling pathway.¹⁰

Given the key function of BTK in BCR pathway and downstream NF-κB pathway, an inhibitor against BTK, ibrutinib, showed encouraging efficacy on patients with untreated and relapsed/refractory CLL, ABC-DLBCL, follicular lymphoma (FL), mantle cell lymphoma (MCL), marginal zone lymphoma (MZL), and lymphoplasmacytic lymphoma (LPL). The inhibition against BTK induces downstream kinase inactivation and cell apoptosis through binding to BTK at the C481 residue irreversibly.11, 12

NF-κB pathway

NF-κB pathway is one of the most common signaling pathways (Fig. 1). In the classical NF-κB pathway that is downstream of BCR and some other pathways, caspase recruitment domain family, member 11/mucosa-associated lymphoid tissue lymphoma translocation protein 1/B-cell leukemia/lymphoma 10 (CARD11/MALT1/BCL10) complex is specific for IκB kinase (IKK) phosphorylation which directly activates IκBα. Subsequently, following activation by active IκBα, RelA/p50 heterodimers translocate into nucleus, executing many functions such as cell survival/anti-apoptosis, proliferation, inflammation, and innate immunity (Fig. 1).13, 14, 15

In the alternative NF-κB pathway, preferentially, the extracellular initiator is B-cell activating factor receptor (BAFF-R), and the activator of IKK complex that includes two IKKα is NF-κB-inducing kinase (NIK). Additionally, the heterodimer RelB/p50 and RelB/p52 are the major types of dimer. The final effector function of alternative NF-κB pathway mainly involves in lymphoid organogenesis, adaptive immunity, anti-inflammatory properties, and B cell maturation.15, 16

These two NF-κB signaling pathways can be seen constitutively activated in almost all types of lymphoma. In ABC-DLBCL, MALT, Hodgkin's lymphoma (HL), Burkitt lymphoma (BL), and some other lymphomas, constitutively activated NF-κB signaling pathway may mostly or partly result in the oncogenic events, mediated by specific mutation of CARD11, CD79A/B, and myeloid differentiation primary response 88 (MYD88), or chromosomal translocations and Epstein–Barr virus (EBV) infections.7, 17, 18, 19

The integrated mediators of NF-κB signaling cascades include MYD88, p50, p52, c-Rel, CD30, and CD40, etc.

MYD88

MYD88 participates in the activation of both NF-κB and JAK/STAT signaling pathways through TLR/ interleukin-1 (IL-1) mediation.²⁰ MYD88^L265P mutations have not only been identified as the hallmark of CLL and LPL/Waldenstrom's macroglobulinemia (WM), but also have been found to be related to poor outcome of a subset of DLBCL patients.¹⁹ Therefore, it is reasonable to believe that patients with MYD88^L265P mutations and dysregulated NF-κB pathways may benefit from drugs inhibiting interleukin-1 receptor associated kinase 4 (IRAK4) that is downstream of MYD88 and is closely related to the function of MYD88, or interrupting NF-κB pathway, TLR/IL-1 pathway, and other related pathways.20, 21

CD30

CD30, a transmembrane cell-surface member of the tumor necrosis factor receptor superfamily, is one of the activators of the NF-κB pathway, and is highly restrictedly expressed in tumor cells in classical HL (cHL), anaplastic large cell lymphoma (ALCL), and a subset of DLBCL and EBV-driven lymphoproliferative disorders.²² In clinical practice, CD30 was mainly used as a valuable diagnostic biomarker to diagnose cHL and ALCL. It was also showed in a study that soluble CD30 in serum could predict poor outcomes and disease progression in CD30-positive lymphomas. Apart from as a diagnostic and predictive biomarker, CD30 has been utilized as a target to develop inhibitor agents, typically like brentuximab vedotin, to treat lymphomas with CD30 high expression, such as HL and ALCL.²²

PI3K-AKT signaling pathway

Following several upstream pathways like BCR pathway, the PI3K-AKT pathway is an important intracellular signaling pathway in regulating cell cycle and is directly related to cellular quiescence, proliferation, cancer, and longevity.²³ PI3K receives upstream signals and then actives AKT via phosphatidylinositol-3,4,5-triphosphate (PIP3). As an oncogenic factor, activated AKT can target many molecules, indirectly activating mTOR complex 1 (mTORC1) and mTOR complex 2 (mTORC2) and increasing mRNA translation, protein synthesis, and cellular proliferation as a result.23, 24, 25 During this PI3K-AKT signaling process, phosphatase and tensin homolog (PTEN) acts as a negative regulator (Fig. 1).²⁶

Considering the oncogenicity conferred by PI3K/AKT/mTOR pathway in several types of lymphomas, the main drivers have been explored in numerous studies. The oncogenic activation may be driven by PIK3CD mutation and copy number increase of PIK3CA in DLBCL and MCL, respectively. In germinal center B-cell-like (GCB)-DLBCL, loss of function of PTEN may be the main driven cause.27, 28, 29

PI3Ks

PI3K family includes three classes of kinase on the basis of their different structures and functions. Isoforms p110α, p110β, p110δ, and p110γ belong to Class I and are more frequently related to cancer. Among them, p110δ and p110γ are related closely to B-cell, T-cell, and natural killer (NK) cell development, proliferation, cytokine secretion, and other cellular functions.30, 31

Therapeutically, as a representative inhibitor of p110δ isoform, idelalisib has exhibited clinical activity in relapsed CLL, MCL, FL, and DLBCL. In addition to its direct inhibitory effect on p110δ, the efficacy of idelalisib may also be due to the indirect regulation of cytokines and chemokines secretion in the microenvironment.31, 32, 33 Other inhibitors, such as buparlisib against pan class-I PI3K and duvelisib against p110δ/p110γ isoform, also have showed efficacy in both T- and B-cell lymphomas.34, 35

AKT and PTEN

AKT and PTEN act as positive and negative mediator of downstream PI3K pathway, respectively, regulating biological processes like cell survival, growth, proliferation, and angiogenesis.³⁶ Owing to some alterations at genetic and epigenetic level, as well as protein–protein interaction, loss-of-function of tumor suppressor PTEN protein may cause the increase of AKT and mTOR activity, which promotes tumor growth and other pathological changes.37, 38 GCB-DLBCL and MCL are the major lymphoma types involved in functional deficiency of PTEN.39, 40

Since the inactivation of PTEN is closely associated with the abnormal activation of PI3K/AKT/mTOR pathway, therapeutically targeting PI3K/AKT/mTOR pathway to treat malignancies with PTEN deficiency may be rational.37, 38, 41 For instance, MK-2206 as a second-generation AKT inhibitor has been used in patients with relapsed/refractory lymphoma in clinical trials.⁴² Pan-PI3K inhibitor like buparlisib, p110δ-specific PI3K inhibitor like idelalisib, mTOR inhibitor like everolimus, are all in clinical evaluation.33, 43, 44 Additionally, the immunohistochemical expression of phosphorylated-AKT protein can be used to assess outcome or treatment response in some lymphoid malignancies.³⁹

mTOR

Serine/threonine-protein kinase mTOR is a key protein kinase in the PI3K/AKT/mTOR signaling pathway which is closely related to cellular metabolism, survival, and growth through targeting several types of proteins. mTOR is the structural unit for the function of mTORC1 and mTORC2. After receiving phosphorylation signals from upstream AKT, activated mTORC1 and mTORC2 execute their corresponding function, positively regulating mRNA translation, cell survival, cytoskeleton organization, and negatively regulating autophagy, respectively.23, 24

Several mTORC1 inhibitors have shown preclinical or clinical efficacy in DLBCL, HL, MCL, FL, CLL/SLL, and even T-cell lymphomas. Temsirolimus and everolimus are the typical mTORC1 inhibitors. They are also expected to have good efficacy with minimized toxicity, either alone or in combination with rituximab.43, 45, 46

Apoptosis signaling pathway

Apoptosis is a genetically programmed process of cell death and is essential for organism development and environmental homeostasis, which involves many complex molecular mechanisms. There are at least two distinct but interconnected pathways in the process of apoptosis: extrinsic and intrinsic apoptosis pathways (Fig. 1).

Extrinsic apoptotic pathway is initiated when ligands bind to a specific subset of death receptors, such as Fas and tumor necrosis factor receptor 1 (TNFR1). Fas firstly binds to Fas associated via death domain (FADD) and subsequently unites with caspase 8 to form a death inducing signaling complex, promoting apoptosis downstream caspase 3 and caspase 7 directly, or activating caspase cascades via mitochondrial-dependent pathway.47, 48 Compared with Fas-mediated way, apoptosis mediated by TNFR1 more likely integrates complex TNFRSF1A associated via death domain (TRADD) (death domain-containing proteins like TRADD) and TNF receptor associated factor 2 (TRAF2), inducing cell death or activating NF-κB function through IKK recruitment.49, 50

In the intrinsic apoptosis pathway, apoptosis is triggered immediately more frequently owing to oncogenic stress, DNA damage and hypoxia. The signals in this pathway are transduced and controlled through interacting with p53, DNA checkpoint proteins, and BCL2 family members located in their upstream or downstream pathways, thereby finally activating caspase 3 and caspase 7 to produce effects like extrinsic pathway.47, 51

While normal apoptosis pathway is disturbed by multiple cellular and extracellular factors, abnormal proliferation finally results in the oncogenesis of hematologic malignancies. Meaningfully, it is worth exploring the diagnostic, predictive, and therapeutic values of BCL2, Myc, p53 and other molecules involved in apoptosis pathways.

BCL2

BCL2 is one of the members of BCL2 family that programmatically control cell death through anti-apoptotic and pro-apoptotic function. BCL2 suppresses apoptotic death in combination with caspases and other BCL2 family members.52, 53

Owing to its translocation with juxtaposed immunoglobulin heavy locus (IgH), t(14; 18)/IgH/BCL2 is a molecular hallmark of FL and can be also detected in some GCB-DLBCL.54, 55 By contrast, in ABC-DLBCL subtype, BCL2 is more often amplified. Apart from its diagnostic value in lymphoma, both translocation and overexpression of BCL2 can be used to predict aggressive clinical features and adverse outcome in some types of lymphoma.40, 56

As for the therapeutic implication, BCL2 appears suitable to develop its inhibitors based on the special structure of BCL2 homology domain 3 (BH3) that can be mimicked through binding to BCL2 or BCL-XL.⁵⁷ Obatoclax and venetoclax (ABT199) are BCL2 inhibitors which can be used for the treatment of relapsed/refractory HL and previously untreated FL while in combination with rituximab through restoring normal apoptosis.58, 59, 60

p53

p53, a well-known nuclear transcription factor and tumor suppressor protein, targets a broad spectrum of functional genes regulating physiological cellular functions and mediates cell apoptosis and growth arrest with the interaction with BCL2 family members and other molecules.61, 62 As a result, p53 inactivation or the dysregulation of p53-involved signaling pathway has been implicated to be oncogenic event for cancers, including lymphomas.61, 63

Theoretically speaking, it seems rational to restore tumor suppressor function of p53, to interrupt mouse double minute-2 homolog (MDM2)-p53 interaction, and to reactivate p53-mediated apoptosis pathways for the development of therapeutics against p53-related malignancies. For example, as a MDM2 inhibitor, APG-115 is such an agent which showed antitumor activities in multiple human cancer xenograft models. It may be able to show activity and safety in human cancer.61, 64, 65, 66

Myc

Myc is well known as a representative pleiotropic transcription factor and an oncogene protein, targeting numerous genes and regulating multiple processes of cell biology and oncology.67, 68 Myc has also been associated with oncogenesis, malignant transformation, and aggressive clinical features in many aggressive cancers including aggressive lymphomas. In BL and a subset of DLBCL, chromosomal translocation of MYC like t(8; 14)(q24; q32) is considered as typical oncogenic event and aggressive feature. MYC translocation accompanied by BCL2 or BCL6 is termed as double-hit or triple-hit lymphoma with relatively unfavorable prognosis. A similar situation also occurs in the double-expression lymphoma with Myc and BCL2 co-overexpression. Therefore, both MYC translocation and Myc overexpression have reference value for diagnosis and prognosis of lymphoma in clinical practice.67, 69

As for the development of Myc targeting therapeutics, JQ1, a type of small molecule inhibitor against bromodomain-containing protein 4 (BRD4), showed encouraging efficacy in patients with hematologic or some other Myc-driven malignancies through downregulating Myc function and expression.70, 71 Another Myc inhibitor against bromodomain and extra-terminal domain (BET)/BRD4 is AZD5153, which showed activity for hematologic malignancies by transcriptionally affecting Myc, E2 promoter binding factor (E2F), and mTOR.⁷² Other strategies for developing Myc-targeted therapeutics may be established in reducing Myc/Myc associated factor X (MAX) hetero-dimerization and DNA binding, affecting MYC-associated chromatin modification, targeting cell cycle kinases, and interfering with its downstream target genes.⁷³

PD-1/PD-Ls signaling pathway

As a pair of co-inhibitory molecules, normal PD-1 and PD-Ls are employed by immune system to balance immune function. Normally, PD-1 negatively regulates effector T-cell functions with the inhibition of T-cell receptor (TCR)/CD3/zeta chain of T cell receptor associated protein kinase 70 (ZAP70) signaling mediated by Src homology region 2 domain-containing phosphatase-1/2 (SHP-1/2) (Fig. 2).74, 75 However, under the triggering of genetic alteration, virus infection, or other conditions in the pathological process, overexpressed PD-Ls in tumor cells and infiltrating cells lead to exhaustion of effector T cell and final immune escape. Such an immune escape signaling pathway contributes to oncogenesis, tumor aggression and metastasis in many types of malignancies.74, 76

Fig. 2.

Overview of PD-1/PD-Ls signaling pathway. Upon binding to its ligands PD-Ls, PD-1 delivers co-inhibitory signals, negatively regulating T-cell function to maintain immune balance. In the cases of tumor, overexpressed PD-Ls activate PD-1 signaling, leading to exhaustion of effector T cell after interaction of PD-1 and PD-Ls. AKT: v-akt murine thymoma viral oncogene homolog; APC: antigen presenting cell; CD: cluster of differentiation; ERK: extracellular signal-regulated kinase; FOXO-1: forkhead box 1; MHCII: major histocompatibility complex, class II; mTOR: mechanistic target of rapamycin; NFAT: nuclear factor of activated T cells; NF-κB: nuclear factor-kappa B; PD-1: programmed death-1; PD-L: programmed death-ligand; PI3K: phosphoinositide-3-kinase; PKC: protein kinase C; SHP-2: Src homology region 2 domain-containing phosphatase-2; TCR: T-cell receptor; ZAP70: zeta chain of T cell receptor associated protein kinase 70.

Many other immune checkpoint pathways and molecules involved in lymphoma can also function like PD-1/PD-Ls signaling. Such as cytotoxic T-lymphocyte-associated protein 4 (CTLA-40)/CD86/CD80, B and T lymphocyte attenuator (BTLA)/herpes virus entry mediator (HVEM), lymphocyte-activation gene 3 (LAG-3)/major histocompatibility complex class II (MHCII), and T cell immunoglobulin mucin-3 (TIM-3)/galectin-9, which are paired respectively to form co-stimulatory signals and co-inhibitory signals, participate in these pathways.⁴ Encouragingly, targeting and blocking PD-1/PD-Ls pathway by monoclonal antibodies has been approved to apply in clinical immunotherapy management for cHL, DLBCL, and FL.4, 74

PD-1 and PD-Ls

PD-1, as an inhibitory cell surface receptor, is encoded by PDCD1 at locus 2q37.3 and mainly expressed on the surface of activated T-cells. PD-L1 and PD-L2, encoded by CD274 and PDCD1LG2 are generally expressed on antigen presenting cells, activated dendritic cells and some macrophages, respectively. Under some pathological conditions, like CD274 amplification or translocation at 9p24.1, as well as oncogenic activation of JAK/STAT or AP-1 pathways or viral infection, PD-L1 has been seen to be overexpressed in lymphoma cells and stromal cells, particularly in cHL, primary mediastinal B-cell lymphoma (PMBL), and a small part of ABC-DLBCL and anaplastic lymphoma kinase (ALK)-positive ALCL.74, 75, 77, 78 In FL and CLL/SLL, PD-1 overexpressed in infiltrating T-cells in follicles of lymph node or tumor cells of CLL cases.79, 80 Interestingly, both PD-L1 and PD-1 overexpression was observed in virus-associated lymphomas.78, 81, 82

Importantly, accumulating studies have proved that prediction for patient outcome and treatment response is feasible according to the aberrant expression status of PD-1 and PD-L1. Therefore, detection of PD-1 and PD-L1 immunohistochemically will be useful to guide the selection of lymphoma patients.79, 83, 84 Additionally, PD-1 combined with other follicular T-helper cell markers like chemokine (C-X-C motif) ligand 13 (CXCL-13) are the robust diagnostic biomarkers for angioimmunoblastic T-cell lymphoma (AITL) diagnosis.⁸⁵

More excitingly, monoclonal antibodies targeting PD-1, pidilizumab, nivolumab and pembrolizumab, have been approved to be used in hematologic malignancies, including cHL, PMBL, FL, CLL/SLL, particularly in relapsed/refractory patients or in combination with autologous hematopoietic stem cell transplantation.86, 87, 88, 89 Some inhibitors against PD-L1, durvalumab, atezolizumab, and avelumab, have also been approved by FDA for the treatment of some solid tumors. Many other agents against PD-1 and PD-L1 are also under investigation or clinical evaluation in patients with solid tumor and hematologic malignancies.90, 91

JAK/STAT signaling pathway

JAK/STAT signaling pathway essentially mediates cytokine signaling and growth factor signaling, involving a network of molecules with different functions. Upon cytokine receptors-cytokine binding, JAKs and STATs become active sequentially. After that, phosphorylated STATs are dimerized and thereby transfer to nucleus from cytoplasm, causing transcriptional activation of the target genes and eventually regulating apoptosis, proliferation, angiogenesis, and metastasis, etc. In turn, this pathway is negatively regulated by suppressor of cytokine signaling (SOCS) and cytokine-induced STAT inhibitor (CIS) (Fig. 3).92, 93, 94

Fig. 3.

Illustration of JAK/STAT signaling pathway. AKT: v-akt murine thymoma viral oncogene homolog; BCL: B-cell leukemia/lymphoma; CIS: cytokine-induced STAT inhibitor; Erk: extracellular signal-regulated kinase; JAK: Janus kinase; mTOR: mechanistic target of rapamycin; MEK: methyl ethyl ketone; PI3K: phosphoinositide-3-kinase; SHP: Src homology region 2 domain-containing phosphatase; SOCS: suppressor of cytokine signaling; STAT: signal transducer and activator of transcription; VEGF: vascular endothelial growth factor.

The dysregulation of JAK/STAT pathway can be seen in lymphomas such as PMBL, cHL, and ABC-DLBCL. The oncogenic events may result from loss-of-function of positive regulator JAK2, STAT3, STAT5, and Jumonji domain-containing protein 2C (JMJD2C), as well as negative regulator SOCS1 and protein tyrosine phosphatase non-receptor type 2 (PTPN2).92, 93, 94, 95, 96

JAKs

Four JAKs (JAK1, JAK2, JAK3, and tyrosine kinase 2) generally involve in hematopoiesis, host defense, and immune response. Several abnormalities of JAKs have been identified as specific signatures in lymphomas. Aberrant amplification of JAK2 and JMJD2C with loss of function of SOCS1 and PTPN2 have been shown in cHL and PMBL; JAK3 mutation in NK T-cell lymphoma and adult T-cell leukemia/lymphoma, JAK2/SEC31A fusion involving t(4; 9)(q21; p24) in cHL, and JAK2/PCM1 fusion deriving from t(8; 9)(p22; p24) in T-cell lymphoma, all have been identified.97, 98, 99, 100

Inhibitor against JAK2/Fms-like tyrosine kinase 3 (FLT3) fusion, pacritinib (SB1518), has been developed for treatment of relapsed/refractory cHL, FL, and DLBCL, demonstrating clinical safety and efficacy.¹⁰¹ Meanwhile, tofacitinib, JAK3 inhibitor, has therapeutic efficacy for EBV-associated NK- and T-cell lymphoma, probably due to its ability to decrease STAT5 phosphorylation, to inhibit proliferation, and to reduce EBV latency.¹⁰²

STATs

STATs family consist of seven members: STAT1, STAT2, STAT3, STAT4, STAT5a, STAT5b and STAT6. STAT3 expression increased significantly in ABC-DLBCL and ALCL patients; in the latter, nucleophosmin 1 (NPM-1)/ALK fusion was proposed to be related to increased STAT3.93, 103, 104 Additionally, STAT3 and STAT5 activation can be observed in cutaneous T-cell lymphoma, and STAT6 mutation occurs in PMBL and FL.105, 106

Therapeutically, a STAT3 inhibitor, pyrimethamine, for the treatment of relapsed CLL/SLL, is being estimated in phase I/II clinical trial (Clinical Trials Registration: NCT01066663).

Remarks and conclusion

As noted above, it has been well recognized that complicate network of dysregulated signaling pathways and their hidden oncogenic alterations contribute a lot to lymphoma oncogenesis and heterogeneity. In the era of precision medicine, it is imperative to precisely identify the dysregulation of these signaling pathways and the “driver” oncogenic biomarkers; it is meaningful to further understand the underlying mechanisms of the dysregulated signaling pathways and to address the potential utility of pathway-related biomarkers. Table 1 summarized the pathway-related biomarkers and their clinical utilities in lymphoid malignancies.

Table 1.

Pathway-related biomarkers and their clinical utilities in lymphoid malignancies.

Oncogenic biomarkers	Related signaling pathways	Functions	Clinical utilities	Targeted agents	Diseases applied	Detection approaches
BTK	BCR, NF-κB signaling pathway	Modulates B-cell development, immune function, transcription, and apoptosis	Therapeutic	BTK inhibitor: Ibrutinib (PCI-32765), BGB-3111, AVL-292 cc-292, M7583, Acalabrutinib (ACP-196)	CLL/SLL, R/R MCL, ABC-DLBCL, FL, MZL, T-cell lymphoma	Sequencing, PCR, IHC
MYD88	NF-κB, IL-1, TLR signaling pathway	Acts as a signal transducer in the IL-1, IL-18, and TLR signaling pathways; involves in innate and adaptive immunity	Diagnostic: MYD88L256P mutation for LPL/WM, HCL; prognostic: ABC-DLBCL	TLRs ligands inhibitor: IMO-8400; IRAK4 inhibitor; ND-2158, ND-2110	ABC-DLBCL with MYD88L256P mutation, other malignancies harboring aberrant MYD88, LPL/WM	Sequencing, PCR, IHC
CD30	NF-κB pathway		Diagnostic and differential diagnostic: CD30 overexpression in cHL, ALCL; Therapeutic	Anti-CD30 antibody: Brentuximab vedotin	cHL and ALCL	IHC
PI3Ks	PI3K/AKT/mTOR, BCR, TLR/MYD88 pathway	PI3Kδ involves in cell growth, proliferation, survival, and morphology; PI3Kγ involves in B-cell, T-cell, and NK cell development, proliferation, migration, and cytokine production	Therapeutic	PI3K inhibitor: SAR 245408 (XL147); PI3Kδ/γ inhibitor: Duvelisib (IPI-145, INK1197); PI3Kδ inhibitor: Idelalisib (CAL-101, GS-1101), AMG 319, Acalisib (GS-9820) (CAL-120); PI3Kγ inhibitor: Buparlisib (BKM120)	R/R NHL, advanced hematologic malignancies	Sequencing, PCR, IHC
AKT	PI3K/AKT/mTOR, BCR, TLR/MYD88 pathway	Regulates cell survival, growth, proliferation, and angiogenesis	Prognostic and predictive: abnormal phosphorylated-AKT expression; Therapeutic	Akt inhibitor: Perifosine (KRX-0401), MK-2206, GSK690693	Hematologic malignancies, Lymphomas	IHC, Sequencing, PCR
mTOR	PI3K/AKT/mTOR, BCR, TLR/MYD88 pathway	Regulates cellular metabolism, survival, growth; mTORC1 regulates mRNA translation, protein synthesis, and autophagy; mTORC2 regulates cell survival and cytoskeleton organization	Therapeutic	mTOR inhibitor: Temsirolimus (CCI-779), Rapamycin (Sirolimus), Ridaforolimus (AP23573, MK-8669); mTORC1/mTORC2 inhibitor: Everolimus (RAD001), AZD2014	Lymphoma, multiple myeloma, hematologic malignancies	Sequencing, PCR, IHC
BCL2	Apoptosis pathway	Suppresses apoptotic death	Diagnostic: Overexpression and translocation in FL, double-expression or double-hit lymphoma; amplification in ABC-DLBCL; Therapeutic	BCL2 inhibitor: Venetoclax (ABT199), Obatoclax Mesylate (GX15-070MS)	FL, DLBCL, R/R lymphoid malignancies	IHC, ISH, PCR, sequencing
p53	Apoptosis pathway	Regulates transcription; regulates cell cycle; induces growth arrest or apoptosis	Diagnostic: overexpression or TP53 mutation; Therapeutic	MDM2 inhibitor: APG-115, DS-3032	Advanced solid tumors or lymphomas	IHC, PCR, sequencing
Myc	Apoptosis pathway	Involves in cell cycle progression, apoptosis and cellular transformation	Diagnostic and prognostic: Overexpression and translocation in BL, double-expression or double-hit lymphoma; Therapeutic	BET inhibitor: JQ1, CPI-0610, AZD5153, AZD5153; Aurora A inhibitor: Alisertib; c-Myc-Max dimerization inhibitor: 10058-F4	BL, DLBCL, hematologic malignancies	IHC, ISH
PD-1	Immune system pathway, TCR pathway	Negatively regulates effector T-cell functions	Predictive: overexpression; diagnostic: expression pattern in AITL; Therapeutic	Anti-PD-1 antibody: Pidilizumab (CT-011), Nivolumab (BMS-936558, MDX-1106, ONO-4538), Pembrolizumab (lambrolizumab, MK-3475)	Aggressive B-cell lymphomas; advanced malignancies; T-cell or NK-cell lymphomas	IHC, ISH
PD-L1	Immune system pathway, TCR pathway	Inhibits T-cell activation and cytokine production upon interaction with PD-1	Predictive: overexpression; Therapeutic	Anti-PD-L1 antibody: Durvalumab (MEDI4736), Avelumab (MSB0010718C), Atezolizumab (MPDL3280A) (RG7446)	Lymphomas, solid tumors; Advanced cHL; R/R PTCL	IHC, ISH
JAKs	JAK/STAT pathway	Involves in cell growth, development, and differentiation; mediates adaptive and innate immunity	Diagnostic: JAK2/SEC31A fusion in cHL; JAK2/PCM1 fusion in T-cell lymphoma; JAK2/FLT3 fusion in cHL, FL, and DLBCL; Aberrant JAK2 and JMJD2C amplification in cHL and PMBL; Therapeutic	JAK3 inhibitor: Tofacitinib (CP-690550); JAK2 inhibitor: Pacritinib (SB1518), Ruxolitinib (INCB018424)	cHL, EBV-related NK/T cell lymphoma; R/R cHL, FL, MCL, and DLBCL; R/R T-cell or NK cell lymphoma, R/R PMBL	ISH, sequencing, PCR, IHC
STATs	JAK/STAT pathway	STAT3 involves in cell growth and apoptosis; STAT6 activates transcription, involves in IL-4 signaling, induces anti-apoptotic activity	Therapeutic	STAT3 inhibitor: Pyrimethamine, IONIS-STAT3Rx (ISIS 481464)	Relapsed CLL/SLL; DLBCL, lymphomas, advanced cancers	Sequencing, PCR, IHC

ABC: active B-cell; ALCL: anaplastic large cell lymphoma; AITL: angioimmunoblastic T-cell lymphoma; AKT: v-akt murine thymoma viral oncogene homolog; BCL2: B-cell leukemia/lymphoma 2; BCR: B-cell receptor; BET: bromodomain and extra-terminal proteins; BL: Burkitt lymphoma; BTK: bruton tyrosine kinase; CD: cluster of differentiation; cHL: classical Hodgkin lymphoma; CLL: chronic lymphocytic leukemia; DLBCL: diffuse large B-cell lymphoma; EBV: Epstein–Barr virus; FL: follicular lymphoma; HCL: Hairy lymphoma; HL: Hodgkin's lymphoma; IHC: immunohistochemistry; IL: interleukin; IRAK4: interleukin-1 receptor associated kinase 4; ISH: in situ hybridization; JAK: Janus kinase; LPL: lymphoplasmacytic lymphoma; MALT: mucosa associated lymphoid tissue lymphoma; MCL: mantle cell lymphoma; MDM2: mouse double minute 2 protein; MM: multiple myeloma; mTOR: mechanistic target of rapamycin; mTORC: mTOR complex; MYD88: myeloid differentiation primary response 88; MZL: marginal zone lymphoma; NF-κB: nuclear factor-kappa B; NHL: non-Hodgkin's lymphoma; NK: natural killer; PCNSL: primary central nervous system lymphoma; PCR: polymerase chain reaction; PD-1: programmed death-1; PD-Ls: programmed death-ligands; PI3K: phosphoinositide-3-kinase; PMBL: primary mediastinal B-cell lymphoma; PTCL: peripheral T-cell lymphoma; R/R: refractory / relapsed; SLL: small lymphocytic lymphoma; STAT: signal transducer and activator of transcription; TCR: T-cell receptor; TLR: Toll-like receptor; WM: Waldenstrom's macroglobulinemia.

With the progress of biotechnologies and the application of advanced detection platform, identifying pathway-based biomarkers becomes available, providing good opportunities to utilize these biomarkers reasonably and feasibly. The two most promising utilizations lie in precise diagnosis and treatment. Instead of relying solely on morphologic and histologic features and clinical experience, molecular classification based on specific biomarker has almost become a requirement for diagnosis, risk-stratification, and treatment-guidance in some lymphoid malignancies.

These pathway-based biomarkers may include gene rearrangement, gene amplification, specific tumor-driving mutations, epigenetic alterations, unusual expressions, as well as other abnormal genotypes and phenotypes. Therefore, faced with so many complicate alterations, there are big challenges to utilize these biomarkers reasonably and efficiently.

In biomarkers screening and detecting, reliable and reproducible biomarkers accurately conveying activated oncogenic pathways in patients will be needed. For example, PD-1 and PD-L1 are not only the therapeutically targeted biomarkers but also predictive biomarkers to guide patients who may benefit from immunotherapy. Moreover, PD-1 is useful for AITL diagnosis. In practice, the robustness of PD-1 and PD-L1 detection may depend on the specificity and sensitivity of the antibody, the platform or method used, the status of intra-tumor heterogeneity, and other factors.

Additionally, in front of enormous amount of information triggered by complex techniques, especially by next generation sequencing (NGS), we are confronted with many problems in the discovery and application of new biomarkers. For instance, despite NGS is becoming more and more popular and the cost is getting lower and lower, in clinical practice, a panel sequencing focusing on a limited number of genes is still a better option than whole genome sequencing. Nevertheless, it will be a trend to apply whole genome sequencing and transcriptome sequencing in routine clinical practice in the future with the advances of technology and increased availability. Another focus is that in addition to single specific diagnostic or prognostic biomarker, rational algorithms or some grouped gene signatures are of great value for routine diagnosis, classification, prognosis, prediction, or monitoring in lymphomas. In fact, a lot has been put into practice.

As for precision treatment, many arguments have emerged. Are patients with malignancies matched with drugs for mutations or “pathway” mutations? Why did the current targeted drugs not achieve desired therapeutic effect in clinical practice? How do clinicians choose the best treatment regimens? Single targeted agent alone? Or in combination with multiple pathway inhibitors? We do need to notice and address these issues. It will be difficult to assess the effect of combination regimens using predictive biomarkers from individual patient. Probably a long-time and large population validation is required for the effect of predictive biomarkers and targeted therapies. In addition, the side effects of these targeted therapies in lymphomas are also of great concern. Here, we summarized the side effects of agents targeting pathway-related biomarkers in Table 2.

Table 2.

Therapeutics targeting pathway-related biomarkers and their side effects in lymphomas.

Biomarker	Therapeutics	Agent	Involved lymphomas	Phase	Common side effects
BTK	BTK inhibitor	Ibrutinib (PCI-32765)	Recurrent B-cell lymphoma, CLL/SLL, R/R MCL, ABC-DLBCL, FL, MZL, T-cell lymphoma	Phase1/2	Mild diarrhea, nausea, fatigue, upper respiratory tract infections, rash, dyspnea
	BTK inhibitor	BGB-3111	R/R B-cell malignancies	Phase1	Minimal side effects
	BTK inhibitor	Acalabrutinib (ACP-196)	R/R ABC-DLBCL; CLL/SLL; MCL	Phase1/2	Comparatively less toxicity, including rash, major bleeding and atrial fibrillation
PI3Ks	PI3Kδ/γ inhibitor	Duvelisib (IPI-145, INK1197)	R/R NHL, advanced hematologic malignancies	Phase1/2	Tansient cytopenias, febrile neutropenia and pneumonia
	PI3Kδ inhibitor	Idelalisib	R/R MCL, FL, SLL, LPL, MZL	Phase 1/2	Fatigue, diarrhea, nausea, rash, chills, and pyrexia
	PI3Kγ inhibitor	Buparlisib (BKM120)	PCNSL, SCNSL, CLL/SLL	Phase 2	Neuropsychiatric symptoms such as mood alteration, suicidal ideation, and altered mental status associated with its use
	PI3Kα/δ inhibitor	Copanlisib (Bay 80-6946)	NHL, aggressive B-cell lymphomas	Phase 3	Hypertension, neutropenia, hyperglycemia, diarrhea, and fatigue
AKT	Akt inhibitor	Perifosine (KRX-0401)	Hematologic malignancies, Lymphomas	Phase 1/2	Nausea, vomiting, diarrhea, and fatigue
	Akt1/2/3 inhibitor	MK-2206	Relapsed lymphoma, R/R DLBCL	Phase 2	Dehydration, hyperglycemia, rash and neutropenia
mTOR	mTOR inhibitor	Temsirolimus (CCI-779)	R/R HL; R/R PCNSL; FL, CLL/SLL, R/R MCL	Phase 1/2/4	Thrombocytopenia
	mTORC1/mTORC2 inhibitor	Everolimus (RAD001)	R/R NHL, R/R MCL, R/R cutaneous T-cell lymphoma	Phase 2	Neutropenia, anemia, and thrombocytopenia in DLBCL
BCL2	BCL-2, BCL-XL, BCL-W inhibitor	Navitoclax (ABT263)	R/R lymphoid malignancy	Phase 2	Diarrhea, nausea, vomiting, fatigue and dose-dependent thrombocytopenia
	BCL2 inhibitor	Venetoclax (ABT199)	NHL, CLL/SLL, MM, R/R NHL	Phase 1/2/3	Diarrhea, neutropenia, fatigue, upper respiratory tract infection, and cough
	BCL2 inhibitor	Obatoclax Mesylate (GX15-070MS)	R/R HL	Phase 2	Neurologic toxicity
P53	P53-MDM2 blockade	ALRN-6924	Advanced solid tumors or lymphomas	Phase 1/2	GI side effects, fatigue, anemia, and headache
Myc	Aurora A inhibitor	Alisertib	Myc-positive aggressive B-cell lymphomas	Phase 1	Myelosuppression alopecia, mucositis and fatigue
	BET inhibitor	JQ1	Hematologic malignancies	Preclinical	Pre-clinical development, no serious side effect was reported
Syk	Syk inhibitor	Fostamatinib (R788)	CLL/SLL, DLBCL, MCL, FL, T-cell lymphoma	Phase1/2	Fatigue, diarrhea, cytopenias, and hypertension
PD-1	Anti-PD-1 antibody	Pidilizumab (CT-011)	DLBCL and PMBL after ASCT; Stage III-IV DLBCL	Phase 2	Mild fatigue, rash, pruritus, diarrhea, and colitis
	Anti-PD-1 antibody	Nivolumab (BMS-936558, MDX-1106, ONO-4538)	R/R DLBCL, PCNSL, PTL, FL, PTCL	Phase 2	Mild fatigue, rash, pruritus, diarrhea, and colitis
	Anti-PD-1 antibody	Pembrolizumab (lambrolizumab, MK-3475)	R/R FL; HL, DLBCL and T-NHL after ASCT; T-cell or NK-cell lymphomas; R/R HL; recurrent PCNSL; R/R PMBL	Phase 2	Mild fatigue, rash, pruritus, diarrhea, and colitis
PD-Ls	Anti-PD-L1 antibody	Durvalumab (MEDI4736)	R/R lymphoma, solid tumor	Phase 1	Fatigue, muscle and bone pain, constipation, decreased appetite, nausea, swelling, and urinary tract infections
	Anti-PD-L1 antibody	Avelumab (MSB0010718C)	Advanced cHL; R/R PTCL	Phase1/2	Immune-mediated adverse reactions (pneumonitis, hepatitis, colitis, adrenal insufficiency, hypo- and hyperthyroidism, diabetes mellitus, and nephritis) and life-threatening infusion reactions; fatigue, musculoskeletal pain, diarrhea, nausea, infusion-related reaction, rash, decreased appetite, and peripheral edema
JAKs	JAK3 inhibitor	Tofacitinib (CP-690550)	EBV-related NK/T cell lymphoma	Preclinical	pre-clinical development
	JAK2 inhibitor	Pacritinib (SB1518)	R/R cHL, FL, MCL, and DLBCL	Phase 1/2	Diarrhea, nausea, vomiting, and abdominal pain
	JAK2 inhibitor	Ruxolitinib (INCB018424)	R/R T-cell or NK cell lymphoma, R/R HL and PMBL	Phase 2	Thrombocytopenia and anemia

ABC: active B-cell; AKT: v-akt murine thymoma viral oncogene homolog1; ASCT: autologous stem cell transplantation; BET: bromodomain and extra-terminal proteins; BCL: B-cell leukemia/lymphoma; BL: Burkitt lymphoma; BTK: bruton tyrosine kinase; cHL: classical Hodgkin lymphoma; CLL: chronic lymphocytic leukemia; DLBCL: diffuse large B-cell lymphoma; EBV: Epstein–Barr virus; FL: follicular lymphoma; GI: gastrointestinal; HL: Hodgkin's lymphoma; JAK: Janus kinase; LPL: lymphoplasmacytic lymphoma; MCL: mantle cell lymphoma; MDM2: mouse double minute-2 homolog; MM: multiple myeloma; mTOR: mechanistic target of rapamycin; mTORC: mTOR complex; MYC: v-Myc avian myelocytomatosis viral oncogene homolog; MYD88: myeloid differentiation primary response 88; MZL: marginal zone lymphoma; NK: natural killer; NHL: non-Hodgkin's lymphoma; PCNSL: primary central nervous system lymphoma; PD-1: programmed death-1; PD-Ls: programmed death-ligands; PI3K: phosphoinositide-3-kinase; PMBL: primary mediastinal B-cell lymphoma; PTCL: peripheral T-cell lymphoma; PTL: primary testicular lymphoma; R/R: refractory / relapsed; SCNSL: secondary central nervous system lymphoma; SLL: small lymphocytic lymphoma; SYK: spleen associated tyrosine kinase; T-NHL: T-cell NHL.

In conclusion, despite the many problems encountered, pathway-based targeted therapy in combination with traditional chemotherapy, single specific targeted antibody, and immunotherapy will raise the hope for the patients with lymphoid malignancies. The rational and efficient utilization of pathway-related biomarkers in diagnosis, prognosis, prediction, and treatment selection in lymphoid malignancies will power precision medicine.

Conflicts of interest

All authors declare no conflicts of interest.

Edited by Pei-Fang Wei