Table 2. Genes showing high level of CN alteration and corresponding values in TCGA.

CNAs DETECTED IN 37 CC								TCGA
Gene symbol	Chromosome band	Number of samples showing CNA	Percentage of samples showing CNA	Log2 (CNA)*	Mean CN Ratio**	Range of CN ratio	Type of CNA	Percentage of samples showing CN GAIN	Number of samples showing CN GAIN	Percentage of samples showing CN LOSS	Number of samples showing CN LOSS
CCND1	11q13.3	1	2.70	2.58	6	5.99–5.99	GAIN	41	11.45	51	14.25
CCNE1	19q12	1	2.70	2.03	4.09	4.09–4.09	GAIN	72	20.11	25	6.98
MAF	16q23.2	6	16.21	1.52	2.92	2.48–4.16	GAIN	84	23.46	23	6.42
BCL2L1	20q11.21	2	5.40	1.41	2.66	2.63–2.68	GAIN	254	70.95	0	0
SRC	20q11.23	2	5.40	1.39	2.92	1.62–4.21	GAIN	255	71.23	1	0.28
IRS2	13q34	1	2.70	1.35	2.55	2.54–2.54	GAIN	211	58.94	7	1.96
CEBPA	19q13.11	6	16.21	1.31	2.53	1.95–3.54	GAIN	69	19.27	25	6.98
PMS2	7p22.1	1	2.70	1.11	2.16	2.15–2.15	GAIN	195	54.47	1	0.28
FANCA	16q24.3	1	2.70	1.11	2.15	2.15–2.15	GAIN	85	23.74	27	7.54
CDK8	13q12.13	3	8.10	1.09	2.18	1.57–2.69	GAIN	214	59.78	8	2.23
CDKN2A	9p21.3	1	2.70	−2.13	0.23	0.22–0.22	LOSS	60	16.76	48	13.41
NPM1	5q35.1	1	2.70	−1.26	0.42	0.41–0.41	LOSS	24	6.7	67	18.72
TCL1A	14q32.13	1	2.70	−1.24	0.42	0.42–0.42	LOSS	25	6.98	118	32.96
CHEK2	22q12.1	1	2.70	−1.19	0.44	0.43–0.43	LOSS	9	2.51	117	32.68
PAX5	9p13.2	1	2.70	−1.17	0.45	0.44–0.44	LOSS	59	16.48	41	11.45
SUFU	10q24.32	1	2.70	−1.07	0.48	0.47–0.47	LOSS	12	3.35	80	22.35
HSP90AA1	14q32.31	1	2.70	−1.03	0.49	0.48–0.48	LOSS	24	6.7	118	32.96
FOXO3	6q21	3	8.10	−1	0.5	0.47–0.51	LOSS	51	14.25	49	13.69
NRAS	1p13.2	1	2.70	−0.99	0.5	0.50–0.50	LOSS	15	4.19	88	24.58
FBXW7	4q31.3	2	5.40	−0.94	0.52	0.49–0.55	LOSS	13	3.63	101	28.21

^*Base 2 logarithm of CN ratio.

^**Ratio of the Tumor Vs Normal intensity signal.