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Acta Crystallographica Section E: Crystallographic Communications logoLink to Acta Crystallographica Section E: Crystallographic Communications
. 2018 Feb 2;74(Pt 3):282–286. doi: 10.1107/S2056989018001561

Crystal structure of the tri­ethyl­ammonium salt of 3-[(4-hy­droxy-3-meth­oxy­phen­yl)(4-hy­droxy-2-oxo-2H-chromen-3-yl)meth­yl]-2-oxo-2H-chromen-4-olate

Muhammad Ikram a,*, Sadia Rehman a, Afzal Khan b, Carola Schulzke c,*
PMCID: PMC5947787  PMID: 29765707

3,3′-[(3-Meth­oxy-4-hy­droxy­phen­yl)methanedi­yl]bis­(4-hy­droxy-2H-chromen-2-one), the 4-hy­droxy-3-meth­oxy­phenyl-substituted derivative of dicoumarol, was deprotonated by the addition of tri­ethyl­amine, yielding the respective ammonium salt which was crystallized from a methanol solution. The deprotonated dicoumarol derivative exhibits an intra­molecular negative charge-assisted hydrogen bond between the deprotonated and non-deprotonated alcohol functions of the coumarol substituents.

Keywords: crystal structure, 4-hy­droxy-3-meth­oxy­phenyl dicoumarol, 4-hy­droxy­coumarin derivatives, negative charge-assisted hydrogen bonds, short intra­molecular hydrogen bonds

Abstract

The reaction between 3,3′-[(3-meth­oxy-4-hy­droxy­phen­yl)methanedi­yl]bis­(4-hy­droxy-2H-chromen-2-one) and tri­ethyl­amine in methanol yielded the title compound tri­ethyl­ammonium 3-[(4-hy­droxy-3-meth­oxy­phen­yl)(4-hy­droxy-2-oxo-2H-chromen-3-yl)meth­yl]-2-oxo-2H-chromen-4-olate, C6H16N+·C26H17O8 or (NHEt3)+(C26H17O8), which crystallized directly from its methano­lic mother liquor. The non-deprotonated coumarol substituent shares its H atom with the deprotonated coumarolate substituent in a short negative charge-assisted hydrogen bond in which the freely refined H atom is moved from its parent O atom towards the acceptor O atom, elongating the covalent O—H bond to 1.18 (3) Å. The respective H atom can therefore be described as being shared by two alcohol O atoms, culminating in the formation of an eight-membered ring.

Chemical context  

Requisite chemotherapeutical treatments of cancer and inhibition of bacterial activities encourage the design of drugs that can effectively target the affected cells or respective pathogens (Nolan et al., 2007; Jung & Park, 2009).

4-Hy­droxy coumarine and its derivatives have been developed and exploited by various researchers in this context (Nolan et al., 2007; Tavolari et al., 2008; Jung & Park, 2009; Li et al., 2015; David, 2017). In biological tests with 3,3′-[(3-meth­oxy-4-hy­droxy­phen­yl)methanedi­yl]bis­(4-hy­droxy-2H-chromen-2-one), much lower than expected cytotoxic activity was found (Rehman et al., 2013), which may be attributed to insufficient solubility. The hydro­phobic nature of this compound is most likely due to strong intra­molecular hydrogen bonding between the two coumarol moieties via two O—H⋯O=C inter­actions, which was confirmed for the solid state by X-ray structural analysis of this compound (Bandyopadhyay, 2015) and close relatives (Manolov et al., 2006; Stanchev et al., 2007).

Hydro­phobic mol­ecules are not only ineffective inside biological fluids but they may also accumulate inside an organism. Increasing the solubility by increasing the hydro­philicity of potentially bioactive mol­ecules may be achieved by converting them into salts (Smith et al., 2009). Therefore, the synthesis of readily soluble ammonium salts of dicoumarol derivatives is of considerable importance. Herein, a crystallographically characterized example (being only the fourth of its kind) is discussed with a focus on its structural aspects.graphic file with name e-74-00282-scheme1.jpg

Structural commentary  

The mol­ecular structure of the title compound is shown in Fig. 1. The deprotonation of one hy­droxy-coumarin substit­uent but not the other leads to a short intra­molecular negative charge-assisted hydrogen bond between the two hy­droxy-coumarin substituents. The formation of such intra­molecular hydrogen bonds between hy­droxy-coumarin substituents is rare though not unprecedented (Kolos et al., 2007; Vijayalakshmi et al., 2001; Waheed & Ahmed, 2016). Recently, Bengiat and coworkers surveyed the occurrence of negative charge-assisted hydrogen bonds (–CAHB) in the Cambridge Structural Database (Groom et al., 2016) in general (Bengiat et al., 2016a ), covering 19 such compounds although excluding the report by Waheed & Ahmed (2016), which was published later that year. Bengiat et al. (2016b ) also discovered the shortest distance between donor and acceptor oxygen atoms of such inter­molecular inter­actions to be 2.404 (3) Å, whereas in all other examples the distance was given as at least 2.430 Å (Bengiat et al., 2016a ). The metrical parameters of the intra­molecular –CAHB in the title compound are D⋯A 2.4139 (15) Å and D—H⋯A 169 (2)°. The distance of the freely refined hydrogen atom to its parent atom O3 is elong­ated to 1.18 (3) Å, while the H⋯A hydrogen-bond length to O6 is rather short at only 1.24 (3) Å. This inter­action is therefore the second shortest such –CAHB overall and the shortest intra­molecular one. In the three related deprotonated dicoumarols, the DA distances range from 2.423 Å (Waheed & Ahmed, 2016) to 2.491 Å (Kolos et al., 2007). Based on the short, and hence strong, intra­molecular hydrogen bond, an eight membered ring is formed (C1/C2/C10/O3/H3O/O6/C19/C11). The distances between the alcohol oxygen atoms and bound carbon atoms are 1.3005 (16) Å (O3—C10) and 1.2939 (17) Å (O6—C19); i.e. both very similar and both significantly shorter than those reported for non-deprotonated derivatives, which range from 1.331 to 1.338 Å (Stanchev et al., 2007). This is in accordance with both alcohol functions being deprotonated and proton­ated to a certain extent at the same time, as was also found in one related structure of a salt (Vijayalakshmi et al., 2001) but not in the other two analogous structures (Kolos et al., 2007; Waheed & Ahmed, 2016).

Figure 1.

Figure 1

The mol­ecular structure of tri­ethyl­ammonium 3-[(4-hy­droxy-3-meth­oxy­phen­yl)(4-hy­droxy-2-oxo-2H-chro­men-3-yl)meth­yl]-2-oxo-2H-chromen-4-olate. Displacement ellipsoids are shown at the 50% probability level.

The ammonium hydrogen atom, which was refined freely, exhibits a hydrogen bond to the carbonyl oxygen atom of the deprotonated coumarol substituent (N1—H1N⋯O4) with D⋯A = 2.7727 (19) Å and D-–H⋯A = 164.5 (18)°.

All of the C—C1—C angles around the central methine carbon atom [C11—C1—C2 = 116.48 (12), C11—C1—C20 = 114.44 (12), C2—C1—C20 = 110.79 (11)°] are slightly widened compared to the ideal tetra­hedral value. As this is most pronounced for the angle involving the two coumarin substit­uents, it is most likely based on steric strain. The bond lengths involving the two pyran oxygen atoms [O2—C3 = 1.3773 (18), O2—C4 =1.3692 (17), O5—C12 = 1.3789 (18) and O5—C13 = 1.365 (2) Å] are similar as observed previously, indicating conjugation between the six-membered rings in the two benzo­pyran systems (Alcock & Hough, 1972; Vijayalakshmi et al., 2001). The planarity of the two benzo­pyran moieties (C2/C3/O2/C4–C10, and C11/C12/O5/C13–C19) support this conclusion, with the largest deviations from the planes found for C2 [0.089 (1) Å; carbon atom binding the central methine carbon C1] and for C18 [0.020 (1) Å]. The dihedral angle between these planes is 50.84 (4)° and they form angles with the phenyl ring plane of 76.24 (5) and 59.40 (5)°, respectively.

Notable differences to the neutral parent mol­ecule (Bandyopadhyay, 2015) comprise (i) the orientation of the hy­droxy coumarin substituents (in the neutral structure one is flipped so that the lactone and alcohol moieties face each other, whereas in the present case alcohol faces alcohol and lactone faces lactone), (ii) a contraction [1.516 (2) Å, C1—C11] and elongation [1.5277 (19) Å, C1—C2] of the methine-to-benzo­pyran-carbon-atom distances of the deprotonated and non-deprotonated substituents compared to the neutral structure (1.520 and 1.521 Å) and (iii) a higher mol­ecular symmetry including the orientation of the 4-hy­droxy-3-meth­oxy­phenyl substituent of the neutral mol­ecule compared to the anion of the title compound, emphasized by the torsion angles between the phenyl moiety and the two benzo­pyrane moieties, which are much more distinct in the anion [C2—C1—C20—C25 = 124.22 (15) and C11—C1—C20—C21 = 169.11 (13)° vs 153.28 and 163.81° in the neutral mol­ecule].

Supra­molecular features  

The crystal packing appears to be dominated by inter­molecular hydrogen-bonding inter­actions. No parallel alignments of the aromatic systems (phenyl, benzo­pyran) in a stacking fashion are observed, i.e. π–π inter­actions are not present.

The alcohol oxygen atom of the 4-hy­droxy-3-meth­oxy­phenyl substituent (O8) bridges the adjacent cation and anion by hydrogen bonding as a classical donor [O8—H8O⋯O1(−x + Inline graphic, y + Inline graphic, −z + Inline graphic); DA = 2.4139 (15) Å] and as acceptor [O8⋯H27B—C27(−x + Inline graphic, y + Inline graphic, −z + Inline graphic); DA = 3.257 (2) Å] in a non-classical hydrogen bond from an amine methyl group (Table 1; Fig. 2, top). The ammonium cations bridge adjacent anions by the intra-formula classical hydrogen bond (N1—H1N⋯O4; see above) and the non-classical donation towards O8 [C27—H27B⋯O8(−x + Inline graphic, y − Inline graphic, −z + Inline graphic; D⋯A = 3.257 (2) (19) Å]. Supported by the hydrogen bond with the carbonyl oxygen atom O1 as acceptor [O1⋯H8O—O8(−x + Inline graphic, y − Inline graphic, −z + Inline graphic); DA = 2.6488 (16) Å], these inter­actions form infinite flat chains with ‘up and down’-pointing benzo­pyrane moieties protruding along b (Fig. 2, bottom left). The packing diagram exhibits a zigzag pattern along b in which adjacent chains are aligned in a zipper-like fashion (Fig. 2, bottom right).

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A D—H H⋯A DA D—H⋯A
O3—H3O⋯O6 1.18 (3) 1.24 (3) 2.4139 (15) 169 (2)
O8—H8O⋯O1i 0.869 (19) 1.789 (19) 2.6488 (16) 170.0 (18)
C27—H27B⋯O8ii 0.99 2.31 3.257 (2) 161
N1—H1N⋯O4 0.98 (2) 1.82 (2) 2.7727 (19) 164.5 (18)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic.

Figure 2.

Figure 2

Hydrogen-bonding inter­actions forming infinite flat chains protruding along b viewed along c (top) and along b (bottom, left; showing the benzo­pyran moieties sticking out up and down). The crystal packing exhibiting a zigzag pattern viewed along b (bottom, right).

Synthesis and crystallization  

3,3′-[(3-Meth­oxy-4-hy­droxy­phen­yl)methanedi­yl]bis­(4-hy­droxy-2H-chromen-2-one) was synthesized following essentially the reported procedure (Rehman et al., 2013). 20 mmol of 3-meth­oxy-4-hy­droxy­benzaldehyde dissolved in anyhydrous ethanol was added to 50 mmol of an ethano­lic solution of 4-hy­droxy­coumarin. The resulting mixture was refluxed at 393 K for 3 h. Upon cooling, a solid white powder was obtained, which was washed with 10% copious ethano­lic/n-hexane solution. The subsequent deprotonation of 3,3′-[(3-meth­oxy-4-hy­droxy­phen­yl)methanedi­yl]bis­(4-hy­droxy-2H-chromen-2-one) was carried out by adding 1 mL of tri­ethyl­amine to its methano­lic solution. The resulting transparent yellowish solution was left standing overnight to grow transparent crystals of tri­ethyl­ammonium 3-[(4-hy­droxy-3-meth­oxy­phen­yl)(4-hy­droxy-2-oxo-2H-chromen-3-yl)meth­yl]-2-oxo-2H-chromen-4-olate.

Refinement  

Crystal data, data collection and structure refinement details are summarized in Table 2. The three hydrogen atoms bound to heteroatoms (N1, O3, O8) were freely refined. Carbon-bound hydrogen atoms were placed in calculated positions, and refined with a riding-model approximation: C—H = 0.95–1.00 Å with U iso(H) = 1.5U eq(C-methyl) and 1.2U eq(C) for other H atoms.

Table 2. Experimental details.

Crystal data
Chemical formula C6H16N+·C26H17O8
M r 559.59
Crystal system, space group Monoclinic, C2/c
Temperature (K) 170
a, b, c (Å) 19.408 (4), 13.518 (3), 21.714 (4)
β (°) 100.16 (3)
V3) 5607 (2)
Z 8
Radiation type Mo Kα
μ (mm−1) 0.10
Crystal size (mm) 0.44 × 0.39 × 0.37
 
Data collection
Diffractometer Stoe IPDS2T
Absorption correction Numerical (X-RED32 and X-SHAPE; Stoe & Cie, 2010)
T min, T max 0.784, 0.927
No. of measured, independent and observed [I > 2σ(I)] reflections 31033, 7726, 4433
R int 0.054
(sin θ/λ)max−1) 0.695
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.044, 0.122, 0.90
No. of reflections 7726
No. of parameters 386
H-atom treatment H atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3) 0.44, −0.27

Computer programs: X-AREA (Stoe & Cie, 2010), SHELXT2016 (Sheldrick, 2015a ), SHELXL2016 (Sheldrick, 2015b ), XP in SHELXTL (Sheldrick, 2008), CIFTAB (Sheldrick, 2008) and Mercury (Macrae et al., 2006).

Hydrogen-bonding inter­actions were identified and analysed using PLATON (Spek, 2009) and finally calculated using the HTAB instruction in SHELXL (together with EQIV) (Sheldrick, 2015b ).

Supplementary Material

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989018001561/lh5866sup1.cif

e-74-00282-sup1.cif (1MB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989018001561/lh5866Isup2.hkl

e-74-00282-Isup2.hkl (614KB, hkl)

Supporting information file. DOI: 10.1107/S2056989018001561/lh5866Isup3.cml

CCDC reference: 1818945

Additional supporting information: crystallographic information; 3D view; checkCIF report

Acknowledgments

CS gratefully acknowledges general financial support from the ERC (project MocoModels).

supplementary crystallographic information

Crystal data

C6H16N+·C26H17O8 F(000) = 2368
Mr = 559.59 Dx = 1.326 Mg m3
Monoclinic, C2/c Mo Kα radiation, λ = 0.71073 Å
a = 19.408 (4) Å Cell parameters from 31667 reflections
b = 13.518 (3) Å θ = 6.3–59.2°
c = 21.714 (4) Å µ = 0.10 mm1
β = 100.16 (3)° T = 170 K
V = 5607 (2) Å3 Prism, colourless
Z = 8 0.44 × 0.39 × 0.37 mm

Data collection

Stoe IPDS2T diffractometer 7726 independent reflections
Radiation source: fine-focus sealed tube 4433 reflections with I > 2σ(I)
Detector resolution: 6.67 pixels mm-1 Rint = 0.054
ω scans θmax = 29.6°, θmin = 3.2°
Absorption correction: numerical (X-RED32 and X-SHAPE; Stoe & Cie, 2010) h = −26→26
Tmin = 0.784, Tmax = 0.927 k = −18→18
31033 measured reflections l = −29→30

Refinement

Refinement on F2 0 restraints
Least-squares matrix: full Hydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.044 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.122 w = 1/[σ2(Fo2) + (0.0718P)2] where P = (Fo2 + 2Fc2)/3
S = 0.90 (Δ/σ)max < 0.001
7726 reflections Δρmax = 0.44 e Å3
386 parameters Δρmin = −0.26 e Å3

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
O1 0.65404 (7) 0.33340 (8) 0.59806 (5) 0.0450 (3)
O2 0.71609 (6) 0.37291 (7) 0.52747 (5) 0.0351 (2)
O3 0.72176 (6) 0.66489 (7) 0.57698 (5) 0.0349 (2)
O4 0.54117 (6) 0.42562 (8) 0.68855 (5) 0.0392 (3)
O5 0.46745 (5) 0.54780 (8) 0.66496 (5) 0.0413 (3)
O6 0.61390 (6) 0.72322 (8) 0.60507 (5) 0.0380 (3)
O7 0.89787 (6) 0.52052 (8) 0.78148 (5) 0.0432 (3)
O8 0.88267 (5) 0.69683 (8) 0.82643 (5) 0.0382 (3)
C1 0.65911 (7) 0.52333 (10) 0.65646 (6) 0.0283 (3)
H1 0.653226 0.456518 0.674616 0.034*
C2 0.68601 (7) 0.50216 (10) 0.59576 (6) 0.0274 (3)
C3 0.68308 (8) 0.40112 (10) 0.57585 (6) 0.0307 (3)
C4 0.75438 (8) 0.43890 (10) 0.49954 (7) 0.0304 (3)
C5 0.79254 (9) 0.40104 (12) 0.45636 (7) 0.0380 (3)
H5 0.791402 0.332382 0.446889 0.046*
C6 0.83190 (9) 0.46504 (12) 0.42771 (7) 0.0397 (4)
H6 0.859256 0.440327 0.398885 0.048*
C7 0.83193 (9) 0.56603 (12) 0.44068 (7) 0.0391 (4)
H7 0.858278 0.609993 0.419785 0.047*
C8 0.79410 (8) 0.60231 (11) 0.48347 (7) 0.0340 (3)
H8 0.794209 0.671288 0.491881 0.041*
C9 0.75550 (7) 0.53842 (10) 0.51466 (6) 0.0282 (3)
C10 0.71880 (7) 0.57089 (10) 0.56401 (6) 0.0280 (3)
C11 0.58739 (7) 0.57065 (11) 0.64990 (6) 0.0306 (3)
C12 0.53443 (8) 0.51111 (11) 0.66936 (7) 0.0334 (3)
C13 0.45011 (8) 0.64011 (12) 0.64179 (7) 0.0384 (4)
C14 0.38105 (9) 0.66885 (15) 0.63775 (9) 0.0515 (4)
H14 0.347869 0.626144 0.651362 0.062*
C15 0.36156 (10) 0.76085 (16) 0.61355 (10) 0.0577 (5)
H15 0.314319 0.781672 0.610423 0.069*
C16 0.40959 (9) 0.82347 (15) 0.59370 (9) 0.0517 (5)
H16 0.395311 0.886758 0.577164 0.062*
C17 0.47810 (9) 0.79387 (12) 0.59795 (8) 0.0420 (4)
H17 0.511084 0.836923 0.584344 0.050*
C18 0.49943 (8) 0.70091 (11) 0.62216 (7) 0.0352 (3)
C19 0.57071 (7) 0.66420 (11) 0.62576 (7) 0.0313 (3)
C20 0.71563 (7) 0.57348 (10) 0.70423 (6) 0.0282 (3)
C21 0.77965 (8) 0.52424 (10) 0.72074 (7) 0.0315 (3)
H21 0.785784 0.461518 0.702725 0.038*
C22 0.83384 (7) 0.56465 (11) 0.76247 (6) 0.0313 (3)
C23 0.82595 (7) 0.65759 (11) 0.78824 (6) 0.0303 (3)
C24 0.76243 (8) 0.70469 (11) 0.77388 (7) 0.0338 (3)
H24 0.756016 0.766884 0.792446 0.041*
C25 0.70744 (8) 0.66260 (11) 0.73256 (7) 0.0331 (3)
H25 0.663662 0.695791 0.723776 0.040*
C26 0.90262 (10) 0.41779 (13) 0.76835 (9) 0.0543 (5)
H26A 0.865134 0.382110 0.783783 0.081*
H26B 0.948123 0.392467 0.789170 0.081*
H26C 0.897890 0.408094 0.723074 0.081*
H3O 0.6704 (13) 0.6889 (17) 0.5951 (11) 0.085 (7)*
H8O 0.8688 (10) 0.7456 (14) 0.8472 (9) 0.047 (5)*
N1 0.43844 (8) 0.30039 (12) 0.62696 (7) 0.0470 (4)
C27 0.44835 (9) 0.20824 (14) 0.66564 (9) 0.0509 (5)
H27A 0.431136 0.220287 0.705272 0.061*
H27B 0.499039 0.193640 0.676315 0.061*
C28 0.41125 (13) 0.11883 (15) 0.63391 (11) 0.0694 (6)
H28A 0.360606 0.130354 0.626276 0.104*
H28B 0.422180 0.060744 0.660876 0.104*
H28C 0.426885 0.107345 0.593994 0.104*
C29 0.46749 (11) 0.28595 (16) 0.56641 (9) 0.0583 (5)
H29A 0.512240 0.249257 0.576127 0.070*
H29B 0.434245 0.244931 0.537270 0.070*
C30 0.47967 (13) 0.38019 (16) 0.53470 (9) 0.0651 (6)
H30A 0.434859 0.413819 0.520966 0.098*
H30B 0.501585 0.366045 0.498311 0.098*
H30C 0.510589 0.422827 0.563915 0.098*
C31 0.36666 (10) 0.34013 (16) 0.61423 (10) 0.0604 (5)
H31A 0.334931 0.289439 0.591806 0.072*
H31B 0.365407 0.398452 0.586472 0.072*
C32 0.34037 (11) 0.3698 (2) 0.67264 (10) 0.0723 (7)
H32A 0.331448 0.310448 0.695904 0.108*
H32B 0.296877 0.407609 0.661328 0.108*
H32C 0.375635 0.410813 0.698784 0.108*
H1N 0.4677 (11) 0.3515 (15) 0.6501 (10) 0.064 (6)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
O1 0.0646 (8) 0.0275 (5) 0.0459 (6) −0.0090 (5) 0.0180 (6) 0.0021 (5)
O2 0.0467 (6) 0.0250 (5) 0.0350 (5) −0.0026 (4) 0.0105 (5) −0.0019 (4)
O3 0.0372 (6) 0.0243 (5) 0.0460 (6) −0.0043 (4) 0.0146 (5) −0.0036 (4)
O4 0.0366 (6) 0.0435 (6) 0.0367 (5) −0.0117 (5) 0.0039 (4) 0.0044 (5)
O5 0.0263 (5) 0.0525 (7) 0.0458 (6) −0.0047 (5) 0.0080 (5) 0.0017 (5)
O6 0.0306 (6) 0.0333 (5) 0.0511 (6) 0.0003 (4) 0.0094 (5) 0.0053 (5)
O7 0.0334 (6) 0.0446 (6) 0.0470 (6) 0.0127 (5) −0.0056 (5) −0.0110 (5)
O8 0.0284 (6) 0.0417 (6) 0.0427 (6) −0.0011 (5) 0.0011 (5) −0.0143 (5)
C1 0.0270 (7) 0.0281 (7) 0.0295 (7) −0.0029 (5) 0.0042 (5) 0.0015 (5)
C2 0.0250 (7) 0.0277 (6) 0.0282 (6) −0.0012 (5) 0.0012 (5) 0.0000 (5)
C3 0.0330 (8) 0.0278 (7) 0.0300 (7) −0.0009 (6) 0.0023 (6) 0.0018 (5)
C4 0.0316 (7) 0.0284 (7) 0.0299 (7) −0.0019 (6) 0.0021 (6) 0.0012 (5)
C5 0.0440 (9) 0.0333 (8) 0.0368 (8) 0.0032 (7) 0.0074 (7) −0.0039 (6)
C6 0.0410 (9) 0.0470 (9) 0.0326 (8) 0.0028 (7) 0.0104 (7) −0.0022 (6)
C7 0.0401 (9) 0.0413 (9) 0.0373 (8) −0.0039 (7) 0.0105 (7) 0.0012 (6)
C8 0.0344 (8) 0.0315 (7) 0.0362 (7) −0.0028 (6) 0.0068 (6) 0.0004 (6)
C9 0.0266 (7) 0.0275 (6) 0.0289 (7) −0.0003 (5) 0.0002 (5) 0.0008 (5)
C10 0.0255 (7) 0.0258 (6) 0.0311 (7) −0.0009 (5) 0.0008 (5) −0.0003 (5)
C11 0.0256 (7) 0.0362 (7) 0.0292 (7) −0.0039 (6) 0.0031 (5) −0.0028 (6)
C12 0.0283 (7) 0.0427 (8) 0.0284 (7) −0.0058 (6) 0.0031 (6) −0.0041 (6)
C13 0.0278 (8) 0.0513 (9) 0.0352 (8) −0.0002 (7) 0.0032 (6) −0.0065 (7)
C14 0.0292 (8) 0.0706 (12) 0.0546 (10) 0.0016 (8) 0.0072 (7) −0.0067 (9)
C15 0.0303 (9) 0.0755 (13) 0.0647 (12) 0.0120 (9) 0.0010 (8) −0.0129 (10)
C16 0.0396 (10) 0.0584 (11) 0.0526 (10) 0.0135 (9) −0.0045 (8) −0.0088 (8)
C17 0.0366 (9) 0.0457 (9) 0.0414 (8) 0.0059 (7) 0.0003 (7) −0.0054 (7)
C18 0.0285 (8) 0.0433 (8) 0.0318 (7) 0.0017 (6) −0.0001 (6) −0.0067 (6)
C19 0.0271 (7) 0.0347 (7) 0.0313 (7) −0.0037 (6) 0.0032 (6) −0.0034 (6)
C20 0.0268 (7) 0.0301 (7) 0.0280 (6) −0.0018 (6) 0.0055 (5) 0.0003 (5)
C21 0.0345 (8) 0.0289 (7) 0.0302 (7) 0.0038 (6) 0.0028 (6) −0.0027 (5)
C22 0.0266 (7) 0.0355 (7) 0.0307 (7) 0.0043 (6) 0.0023 (5) −0.0012 (6)
C23 0.0260 (7) 0.0351 (7) 0.0288 (7) −0.0037 (6) 0.0025 (5) −0.0033 (6)
C24 0.0315 (8) 0.0311 (7) 0.0385 (8) 0.0007 (6) 0.0056 (6) −0.0081 (6)
C25 0.0261 (7) 0.0340 (7) 0.0384 (8) 0.0030 (6) 0.0037 (6) −0.0033 (6)
C26 0.0536 (11) 0.0461 (10) 0.0575 (11) 0.0231 (9) −0.0055 (9) −0.0063 (8)
N1 0.0418 (8) 0.0546 (8) 0.0391 (7) −0.0160 (7) −0.0081 (6) 0.0083 (6)
C27 0.0362 (9) 0.0638 (12) 0.0495 (10) −0.0042 (8) −0.0010 (8) 0.0164 (9)
C28 0.0777 (15) 0.0541 (12) 0.0745 (14) −0.0127 (11) 0.0082 (12) 0.0119 (10)
C29 0.0603 (12) 0.0710 (13) 0.0402 (9) −0.0151 (10) −0.0002 (8) −0.0013 (9)
C30 0.0820 (15) 0.0759 (14) 0.0356 (9) −0.0231 (12) 0.0051 (9) 0.0010 (9)
C31 0.0511 (11) 0.0590 (12) 0.0622 (12) −0.0008 (9) −0.0145 (9) 0.0007 (10)
C32 0.0476 (12) 0.1114 (19) 0.0579 (12) −0.0237 (12) 0.0092 (10) 0.0128 (12)

Geometric parameters (Å, º)

O1—C3 1.2183 (17) C16—C17 1.376 (2)
O2—C4 1.3692 (17) C16—H16 0.9500
O2—C3 1.3773 (18) C17—C18 1.396 (2)
O3—C10 1.3005 (16) C17—H17 0.9500
O3—H3O 1.18 (3) C18—C19 1.459 (2)
O4—C12 1.2275 (18) C20—C25 1.375 (2)
O5—C13 1.365 (2) C20—C21 1.399 (2)
O5—C12 1.3789 (18) C21—C22 1.375 (2)
O6—C19 1.2939 (17) C21—H21 0.9500
O6—H3O 1.24 (3) C22—C23 1.395 (2)
O7—C22 1.3745 (17) C23—C24 1.374 (2)
O7—C26 1.424 (2) C24—C25 1.389 (2)
O8—C23 1.3634 (17) C24—H24 0.9500
O8—H8O 0.869 (19) C25—H25 0.9500
C1—C11 1.516 (2) C26—H26A 0.9800
C1—C2 1.5277 (19) C26—H26B 0.9800
C1—C20 1.5287 (19) C26—H26C 0.9800
C1—H1 1.0000 N1—C31 1.473 (2)
C2—C10 1.3779 (19) N1—C27 1.496 (2)
C2—C3 1.4307 (19) N1—C29 1.532 (3)
C4—C9 1.384 (2) N1—H1N 0.98 (2)
C4—C5 1.391 (2) C27—C28 1.510 (3)
C5—C6 1.374 (2) C27—H27A 0.9900
C5—H5 0.9500 C27—H27B 0.9900
C6—C7 1.394 (2) C28—H28A 0.9800
C6—H6 0.9500 C28—H28B 0.9800
C7—C8 1.372 (2) C28—H28C 0.9800
C7—H7 0.9500 C29—C30 1.487 (3)
C8—C9 1.395 (2) C29—H29A 0.9900
C8—H8 0.9500 C29—H29B 0.9900
C9—C10 1.455 (2) C30—H30A 0.9800
C11—C19 1.385 (2) C30—H30B 0.9800
C11—C12 1.427 (2) C30—H30C 0.9800
C13—C14 1.383 (2) C31—C32 1.503 (3)
C13—C18 1.385 (2) C31—H31A 0.9900
C14—C15 1.377 (3) C31—H31B 0.9900
C14—H14 0.9500 C32—H32A 0.9800
C15—C16 1.383 (3) C32—H32B 0.9800
C15—H15 0.9500 C32—H32C 0.9800
C4—O2—C3 121.30 (11) C25—C20—C21 118.02 (13)
C10—O3—H3O 109.5 (11) C25—C20—C1 124.51 (13)
C13—O5—C12 121.49 (12) C21—C20—C1 117.47 (12)
C19—O6—H3O 118.4 (11) C22—C21—C20 121.43 (13)
C22—O7—C26 116.76 (13) C22—C21—H21 119.3
C23—O8—H8O 108.6 (12) C20—C21—H21 119.3
C11—C1—C2 116.48 (12) O7—C22—C21 124.85 (13)
C11—C1—C20 114.44 (12) O7—C22—C23 115.34 (12)
C2—C1—C20 110.79 (11) C21—C22—C23 119.80 (13)
C11—C1—H1 104.5 O8—C23—C24 123.63 (13)
C2—C1—H1 104.5 O8—C23—C22 117.41 (13)
C20—C1—H1 104.5 C24—C23—C22 118.96 (13)
C10—C2—C3 119.32 (13) C23—C24—C25 120.88 (13)
C10—C2—C1 124.31 (12) C23—C24—H24 119.6
C3—C2—C1 115.99 (12) C25—C24—H24 119.6
O1—C3—O2 113.83 (12) C20—C25—C24 120.78 (13)
O1—C3—C2 126.45 (14) C20—C25—H25 119.6
O2—C3—C2 119.72 (12) C24—C25—H25 119.6
O2—C4—C9 121.00 (13) O7—C26—H26A 109.5
O2—C4—C5 117.01 (12) O7—C26—H26B 109.5
C9—C4—C5 121.98 (14) H26A—C26—H26B 109.5
C6—C5—C4 118.58 (14) O7—C26—H26C 109.5
C6—C5—H5 120.7 H26A—C26—H26C 109.5
C4—C5—H5 120.7 H26B—C26—H26C 109.5
C5—C6—C7 120.38 (15) C31—N1—C27 115.64 (15)
C5—C6—H6 119.8 C31—N1—C29 111.38 (15)
C7—C6—H6 119.8 C27—N1—C29 110.21 (15)
C8—C7—C6 120.37 (15) C31—N1—H1N 106.5 (12)
C8—C7—H7 119.8 C27—N1—H1N 107.2 (12)
C6—C7—H7 119.8 C29—N1—H1N 105.2 (12)
C7—C8—C9 120.32 (14) N1—C27—C28 114.01 (15)
C7—C8—H8 119.8 N1—C27—H27A 108.8
C9—C8—H8 119.8 C28—C27—H27A 108.8
C4—C9—C8 118.30 (14) N1—C27—H27B 108.8
C4—C9—C10 118.59 (13) C28—C27—H27B 108.8
C8—C9—C10 123.06 (13) H27A—C27—H27B 107.6
O3—C10—C2 123.86 (13) C27—C28—H28A 109.5
O3—C10—C9 116.45 (12) C27—C28—H28B 109.5
C2—C10—C9 119.63 (12) H28A—C28—H28B 109.5
C19—C11—C12 119.64 (13) C27—C28—H28C 109.5
C19—C11—C1 124.77 (13) H28A—C28—H28C 109.5
C12—C11—C1 115.57 (13) H28B—C28—H28C 109.5
O4—C12—O5 113.87 (13) C30—C29—N1 113.64 (17)
O4—C12—C11 126.33 (14) C30—C29—H29A 108.8
O5—C12—C11 119.74 (13) N1—C29—H29A 108.8
O5—C13—C14 116.94 (15) C30—C29—H29B 108.8
O5—C13—C18 121.14 (14) N1—C29—H29B 108.8
C14—C13—C18 121.90 (16) H29A—C29—H29B 107.7
C15—C14—C13 118.40 (18) C29—C30—H30A 109.5
C15—C14—H14 120.8 C29—C30—H30B 109.5
C13—C14—H14 120.8 H30A—C30—H30B 109.5
C14—C15—C16 121.12 (17) C29—C30—H30C 109.5
C14—C15—H15 119.4 H30A—C30—H30C 109.5
C16—C15—H15 119.4 H30B—C30—H30C 109.5
C17—C16—C15 119.84 (18) N1—C31—C32 112.94 (17)
C17—C16—H16 120.1 N1—C31—H31A 109.0
C15—C16—H16 120.1 C32—C31—H31A 109.0
C16—C17—C18 120.38 (18) N1—C31—H31B 109.0
C16—C17—H17 119.8 C32—C31—H31B 109.0
C18—C17—H17 119.8 H31A—C31—H31B 107.8
C13—C18—C17 118.36 (15) C31—C32—H32A 109.5
C13—C18—C19 118.82 (14) C31—C32—H32B 109.5
C17—C18—C19 122.80 (15) H32A—C32—H32B 109.5
O6—C19—C11 124.88 (13) C31—C32—H32C 109.5
O6—C19—C18 115.97 (13) H32A—C32—H32C 109.5
C11—C19—C18 119.14 (13) H32B—C32—H32C 109.5

Hydrogen-bond geometry (Å, º)

D—H···A D—H H···A D···A D—H···A
O3—H3O···O6 1.18 (3) 1.24 (3) 2.4139 (15) 169 (2)
O8—H8O···O1i 0.869 (19) 1.789 (19) 2.6488 (16) 170.0 (18)
C27—H27B···O8ii 0.99 2.31 3.257 (2) 161
N1—H1N···O4 0.98 (2) 1.82 (2) 2.7727 (19) 164.5 (18)

Symmetry codes: (i) −x+3/2, y+1/2, −z+3/2; (ii) −x+3/2, y−1/2, −z+3/2.

Funding Statement

This work was funded by FP7 Ideas: European Research Council grant 281257 to Carola Schulzke.

References

  1. Alcock, N. W. & Hough, E. (1972). Acta Cryst. B28, 1957–1960.
  2. Bandyopadhyay, D. (2015). CCDC communication, doi: 10.5517/cc1j9kq3
  3. Bengiat, R., Gil, M., Klein, A., Bogoslavsky, B., Cohen, S. & Almog, J. (2016a). Acta Cryst. E72, 399–402. [DOI] [PMC free article] [PubMed]
  4. Bengiat, R., Gil, M., Klein, A., Bogoslavsky, B., Cohen, S., Dubnikova, F., Yardeni, G., Zilbermann, I. & Almog, J. (2016b). Dalton Trans. 45, 8734–8739. [DOI] [PubMed]
  5. David, J. T. (2017). Curr. Drug Targets, 18, 500–510.
  6. Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179. [DOI] [PMC free article] [PubMed]
  7. Jung, J.-C. & Park, O.-S. (2009). Molecules, 14, 4790–4803.
  8. Kolos, N. N., Gozalishvili, L. L., Yaremenko, F. G., Shishkin, O. V., Shishkina, S. V. & Konovalova, I. S. (2007). Russ. Chem. Bull. 56, 2277–2283.
  9. Li, J., Sui, Y. P., Xin, J. J., Du, X. L., Li, J. T., Huo, H. R., Ma, H., Wang, W. H., Zhou, H. Y., Zhan, H. D., Wang, Z. J., Li, C., Sui, F. & Li, X. (2015). Bioorg. Med. Chem. Lett. 25, 5520–5523. [DOI] [PubMed]
  10. Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Towler, M. & van de Streek, J. (2006). J. Appl. Cryst. 39, 453–457.
  11. Manolov, I., Maichle-Moessmer, C. & Danchev, N. (2006). Eur. J. Med. Chem. 41, 882–890. [DOI] [PubMed]
  12. Nolan, K. A., Zhao, H., Faulder, P. F., Frenkel, A. D., Timson, D. J., Siegel, D., Ross, D., Burke, T. R. Jr, Stratford, I. J. & Bryce, R. A. (2007). J. Med. Chem. 50, 6316–6325. [DOI] [PubMed]
  13. Rehman, S., Ikram, M., Baker, R. J., Zubair, M., Azad, E., Min, S., Riaz, K., Mok, K. H., Kh, & Rehman, S. U. (2013). Chem. Cent. J. 7, 68. [DOI] [PMC free article] [PubMed]
  14. Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
  15. Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8.
  16. Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8.
  17. Smith, S. M. & Gums, J. G. (2009). Expert Opin. Drug Metab. Toxicol. 5, 813–822. [DOI] [PubMed]
  18. Spek, A. L. (2009). Acta Cryst. D65, 148–155. [DOI] [PMC free article] [PubMed]
  19. Stanchev, S., Maichle-Mössmer, C. & Manolov, I. (2007). Z. Naturforsch. Teil B, 62, 737–741.
  20. Stoe & Cie (2010). X-AREA. Stoe & Cie, Darmstadt, Germany.
  21. Tavolari, S., Bonafè, M., Marini, M., Ferreri, C., Bartolini, G., Brighenti, E., Manara, S., Tomasi, V., Laufer, S. & Guarnieri, T. (2008). Carcinogenesis, 29, 371–380. [DOI] [PubMed]
  22. Vijayalakshmi, L., Parthasarathi, V., Vora, V., Desai, B. & Shah, A. (2001). Acta Cryst. C57, 817–818. [DOI] [PubMed]
  23. Waheed, M. & Ahmed, N. (2016). Tetrahedron Lett. 57, 3785–3789.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989018001561/lh5866sup1.cif

e-74-00282-sup1.cif (1MB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989018001561/lh5866Isup2.hkl

e-74-00282-Isup2.hkl (614KB, hkl)

Supporting information file. DOI: 10.1107/S2056989018001561/lh5866Isup3.cml

CCDC reference: 1818945

Additional supporting information: crystallographic information; 3D view; checkCIF report


Articles from Acta Crystallographica Section E: Crystallographic Communications are provided here courtesy of International Union of Crystallography

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