The title compound, a cassane-type diterpenoid, was isolated from a medicinally important plant, Caesalpinia pulcherrima (Fabaceae). In the molecule, the three cyclohexane rings are trans-fused and adopt chair, chair and half chair conformations.
Keywords: crystal structure, Caesalpinia pulcherrima, cassane-type diterpenoids, Hirshfeld surface analysis, electrostatic potential
Abstract
The title compound, C29H36O5, a cassane-type diterpenoid {systematic name: (4aR,5R,6R,6aS,7R,11aS,11bR)-4a,6-dihydroxy-4,4,7,11b-tetramethyl-1,2,3,4,4a,5,6,6a,7,11,11a,11b-dodecahydrophenanthro[3,2-b]furan-5-yl 3-phenylprop-2-enoate}, was isolated from a medicinally important plant, Caesalpinia pulcherrima (Fabaceae). In the molecule, three cyclohexane rings are trans-fused and adopt chair, chair and half-chair conformations. In the crystal, molecules are linked via O—H⋯O hydrogen bonds, forming a tape structure along the b-axis direction. The tapes are further linked into a double-tape structure through C—H⋯π interactions. The Hirshfeld surface analysis indicates that the contributions to the crystal packing are H⋯H (65.5%), C⋯H (18.7%), O⋯H (14.5%) and C⋯O (0.3%).
Chemical context
Caesalpinia pulcherrima (Fabaceae) is a decorative evergreen plant widely used for the treatment of various illnesses (Roach et al., 2003 ▸). It is commonly known as Gulmohor, Krishnachura and Mayirkonnai, respectively, in Hindi, Bengali and Tamil. Herbalists in the Amazon tropical rain forest have long known some of the medicinal uses of C. pulcherrima, known locally as ayoowiri (Patel et al., 2010 ▸). The plant is also known to be used for the treatment of inflammation, earache, muscular and sore pain and cardiovascular disorders and as an antimalarial, vermifuge and antipyretic agent (Patel et al., 2010 ▸; Roach et al., 2003 ▸). The natural constituents commonly known as cassane-type diterpenoids extracted from C. pulcherrima have been reported by Pranithanchai et al. (2009 ▸) and Rao et al. (2005 ▸). Cassane-type diterpenoids represent a class of pharmaceutically important natural products having various biological activities. The current study deals with the isolation, single-crystal X-ray diffraction and Hirshfeld surface analysis of the title compound, a naturally occurring cassane-type diterpenoid.
Structural commentary
The title compound is composed of three trans-fused cyclohexane rings, A (C1–C5/C10), B (C5–C10) and C (C8/C9/C11–C14), having chair, chair and half-chair conformations, respectively; the puckering parameters are Q = 0.561 (3) Å, θ = 0.0 (3)° and φ = 300 (132)° for ring A, Q = 0.555 (2) Å, θ = 4.4 (2)° and φ = 319 (4)° for ring B, and Q = 0.456 (2) Å, θ = 45.9 (3)° and φ = 17.7 (4)° for ring C (Fig. 1 ▸). The fused rings have trans-oriented hydroxyl and methyl groups attached at atoms C5 and C10, respectively, along the junction of rings A and B, with an O1—C5—C10—C19 torsion angle of −174.41 (18)°. The furan (O2/C12/C13/C15/C16) ring is essentially planar with the C12=C13 and C15=C16 double bonds having the same length (1.343 Å). The dihedral angle between the furan ring and the phenyl C24–C29 ring of the cinnamoyl moiety is 82.14 (13)°. The absolute configurations of the stereogenic centers at positions 5, 6, 7, 8, 9, 10 and 14 are established as R, R, R, S, S, R and R, respectively, on the basis of the reported structure by Fun et al. (2010 ▸). In the molecule, an intramolecular C—H⋯O interaction (C17—H17C⋯O3; Table 1 ▸) forms an S(6) ring motif.
Figure 1.
The molecular structures of the title compound, showing atom-labelling scheme with displacement ellipsoids drawn at the 50% probability level. The intramolecular C—H⋯O interaction is shown as a dashed line.
Table 1. Hydrogen-bond geometry (Å, °).
Cg1 is the centroid of the O2/C12–C16 furan ring.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| O5—H5⋯O2i | 0.84 | 2.16 | 2.924 (2) | 151 |
| C3—H3A⋯Cg1ii | 0.98 | 2.94 | 3.896 (3) | 163 |
| C17—H17C⋯O3 | 0.98 | 2.40 | 3.091 (3) | 127 |
Symmetry codes: (i)
; (ii)
.
Supramolecular features
In the crystal, the molecules are linked via O—H⋯O hydrogen bonds (O5—H5⋯O2i; symmetry code as in Table 1 ▸), forming chains along the b-axis direction (Fig. 2 ▸). The chains are further linked into a double-chain structure through C—H⋯π interactions (C3—H3A⋯Cg1ii; symmetry code as in Table 1 ▸) involving the furan ring.
Figure 2.
A packing diagram of the title compound. The O—H⋯O and C—H⋯O interactions are shown as dashed lines. H atoms except for the methyl group involved in the C—H⋯O hydrogen bond and the OH groups have been omitted.
Hydrogen bonding and Hirshfeld surface analysis
The Hishfeld surface mapped over d norm (McKinnon et al., 2004 ▸; Spackman & Jayatilaka, 2009 ▸) for the title compound is depicted in Fig. 3 ▸. The red areas on the surface indicate short contacts as compared to the sum of the Van der Waals (vdW) radii, while the blue indicate long contacts and white area indicate contacts with distances equal to the sum of the vdW radii. The red highlighted area shows the O—H⋯O hydrogen bond, which is responsible for connecting molecules to each other. The contribution of the H⋯H contacts to the crystal packing is 65.5%, and C⋯H, O⋯H and C⋯O contributions are 18.7, 14.5 and 0.3%, respectively. The Hirshfeld surface mapped over electrostatic potential (Spackman et al., 2008 ▸) is shown in Fig. 4 ▸. The red region indicates atoms having potential to be hydrogen-bond acceptors with negative electrostatic potential, while the blue shows potential to be hydrogen-bond donors with positive electrostatic potential. Fig. 5 ▸ shows the Hishfeld surface mapped over shape-index and two-dimensional fingerprint plots are given in Fig. 6 ▸.
Figure 3.
Hirshfeld surface over d norm generated for the title compound and neighbouring molecules linked via O—H⋯O hydrogen bonds (dashed lines). [Symmetry codes: (i) x, y + 1, z; (iii) x, y − 1, z.]
Figure 4.
Electrostatic potential surface generated incorporated with Hirshfeld surface for compound (I).
Figure 5.
Hirshfeld surface mapped over shape-index calculated for the title compound.
Figure 6.
Two-dimensional fingerprint plots for compound (I).
Database survey
A search of the Cambridge Structural Database (Version 5.38; Groom et al., 2016) for a common fragment composed of three trans-fused six-membered rings and one planar furan ring shows 12 hits: Refcodes CSLPIN10 (Birnbaum et al., 1969 ▸), DUTJIM, DUVCON (Fun et al., 2010 ▸), EGAYIU, EGAYUG, EGAZAN, and EGAZER (Jiang et al., 2002 ▸), MEYREN, MEYRIR, MEYROX and MEYRUD (Jiang et al., 2001 ▸), and POPNIR (Kitagawa et al., 1994 ▸). All of the hits are of the same class of compounds as the title compound, i.e. cassane-type diterpenoids, with different substitution patterns on the fused rings.
Isolation and crystallization
The powdered stem bark (2.5 kg) of C. pulcherrima was extracted with methanol (7.5 l) by cold maceration for four days, followed by filteration and concentration using a rotary evaporator under reduced pressure at 228 K to obtain the crude plant extract (200 g). The crude extract was further fractionated by silica gel chromatography first using n-hexane (9.4 l) and then with increasing polarities of solvents [n-hexane:ethylacetate (1:1) (12.5 l), ethyl acetate (8.2 l), ethyl acetate:methanol (1:1) (13 l) and finally with methanol (7 l)]. Concentration of fractions in vacuo gave five major fractions of 0.45, 38.81, 25.75, 127.73 and 4.18 g after elution from n-hexane, n-hexane:ethyl acetate (1:1), ethyl acetate, ethyl acetate:methanol (1:1) and methanol, respectively. The dried n-hexane:ethylacetate (1:1) fraction was re-chromatographed by column chromatography over silica gel using increasing proportions of ethyl acetate in n-hexane (starting from 100% n-hexane) as eluents to afford twelve sub-fractions. One sub-fraction, CP93-123 (6 g), obtained after elution from n-hexane:ethyl acetate (9:1), was re-fractionated on silica gel with n-hexane:ethyl acetate (100:0 to 80:20) to give three sub fractions (CP93-123-A, -B and -C). The sub fraction CP93-123A was suspended in n-hexane:ethyl acetate (97:3). A white crystalline product was obtained, which was filtered and dried to give the title compound (yield 74 mg, 3.7 × 10−4%). Single crystals of the title compound were obtained by slow evaporation of an ethanol solution at 296 K.
Data collection and Refinement
Crystal data, refinement results are summarized in Table 2 ▸. All H atoms were placed geometrically (C—H = 0.95–1.00 Å and O—H = 0.84 Å) and were refined as riding with U iso(H) = 1.2U eq(C) or 1.5U eq(O). Since a partial racemic twin of the crystal was suggested from a Flack parameter of 0.17 (7) (Parsons et al., 2013 ▸), a twin treatment was adopted in the final refinement. The BASF parameter refined to 0.0 (2). It is, therefore, uncertain whether the crystal used was an inversion twin or not.
Table 2. Experimental details.
| Crystal data | |
| Chemical formula | C29H36O5 |
| M r | 464.58 |
| Crystal system, space group | Monoclinic, P21 |
| Temperature (K) | 100 |
| a, b, c (Å) | 12.1129 (3), 7.8973 (2), 12.9253 (3) |
| β (°) | 94.930 (1) |
| V (Å3) | 1231.85 (5) |
| Z | 2 |
| Radiation type | Cu Kα |
| μ (mm−1) | 0.67 |
| Crystal size (mm) | 0.17 × 0.13 × 0.06 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 21754, 4526, 4183 |
| R int | 0.049 |
| (sin θ/λ)max (Å−1) | 0.602 |
| Refinement | |
| R[F 2 > 2σ(F 2)], wR(F 2), S | 0.035, 0.085, 1.00 |
| No. of reflections | 4526 |
| No. of parameters | 314 |
| No. of restraints | 1 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.19, −0.21 |
| Absolute structure | Refined as an inversion twin |
| Absolute structure parameter | 0.0 (2) |
Supplementary Material
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989018002499/is5486sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989018002499/is5486Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989018002499/is5486Isup3.cml
CCDC reference: 1823530
Additional supporting information: crystallographic information; 3D view; checkCIF report
supplementary crystallographic information
Crystal data
| C29H36O5 | F(000) = 500 |
| Mr = 464.58 | Dx = 1.253 Mg m−3 |
| Monoclinic, P21 | Cu Kα radiation, λ = 1.54178 Å |
| a = 12.1129 (3) Å | Cell parameters from 9975 reflections |
| b = 7.8973 (2) Å | θ = 3.4–68.3° |
| c = 12.9253 (3) Å | µ = 0.67 mm−1 |
| β = 94.930 (1)° | T = 100 K |
| V = 1231.85 (5) Å3 | Plate, colourless |
| Z = 2 | 0.17 × 0.13 × 0.06 mm |
Data collection
| Bruker APEXII CCD diffractometer | Rint = 0.049 |
| φ and ω scans | θmax = 68.3°, θmin = 3.4° |
| 21754 measured reflections | h = −14→14 |
| 4526 independent reflections | k = −9→9 |
| 4183 reflections with I > 2σ(I) | l = −15→15 |
Refinement
| Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| R[F2 > 2σ(F2)] = 0.035 | w = 1/[σ2(Fo2) + (0.0501P)2 + 0.2131P] where P = (Fo2 + 2Fc2)/3 |
| wR(F2) = 0.085 | (Δ/σ)max < 0.001 |
| S = 1.00 | Δρmax = 0.19 e Å−3 |
| 4526 reflections | Δρmin = −0.21 e Å−3 |
| 314 parameters | Absolute structure: Refined as an inversion twin |
| 1 restraint | Absolute structure parameter: 0.0 (2) |
Special details
| Experimental. 1H-NMR (400 MHz C3D6O): 7.71(m), 7.62(m), 7.41(m), 7.41(m), 7.29(d, J = 1.6 Hz), 6.58(d, J = 16 Hz), 6.23(d,J = 1.6Hz), 5.65(d, J = 4Hz), 4.28(m), 3.04(q, J = 12,6.4 Hz), 2.48(m), 2.48(m), 1.97(m), 1.86(T, J = 12.8), 1.02(m), 1.72(m), 1.41(m), 1.65(m), 1.40(m), 1.46(s), 1.19(s), 1.10(m), 1.04(d, J = 7.2). 13C-NMR (300 MHz C3D6O): 166.9, 150.23, 145.11, 141.3, 135.5, 131.1, 129.8,129.0, 120.1, 122.9, 110.5, 78.04, 74.50, 68.93, 41.88, 39.97, 39.10, 38.43, 38.02, 35.52, 28.25, 28.18, 25.81, 22.44, 19.04, 17.77, 17.45. IR: (cm-1) 3592.0, 3058.8, 2934.9, 2866.8, 1713.9, 1639.7, 1577.8, 1503.1, 1456.6, 1391.8, 1310.3, 1280.8, 1168.4, 1058.3, 1008.2, 979.7, 909.7 863.8, 765.9, 723.1, 687.4. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refined as a 2-component inversion twin. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.51780 (13) | 0.1960 (2) | 0.12545 (11) | 0.0191 (4) | |
| H1 | 0.583625 | 0.166840 | 0.119366 | 0.029* | |
| O2 | 0.22809 (14) | −0.4687 (2) | −0.01284 (13) | 0.0223 (4) | |
| O3 | 0.31947 (13) | 0.1907 (2) | 0.31852 (11) | 0.0176 (3) | |
| O4 | 0.28626 (16) | 0.4678 (2) | 0.34903 (15) | 0.0300 (4) | |
| O5 | 0.19074 (13) | 0.2782 (2) | 0.14554 (12) | 0.0190 (4) | |
| H5 | 0.187516 | 0.371232 | 0.113926 | 0.029* | |
| C1 | 0.5738 (2) | −0.1463 (3) | 0.19336 (19) | 0.0223 (5) | |
| H1A | 0.563465 | −0.270610 | 0.191241 | 0.027* | |
| H1B | 0.596970 | −0.110358 | 0.125098 | 0.027* | |
| C2 | 0.6658 (2) | −0.1033 (4) | 0.2771 (2) | 0.0281 (6) | |
| H2A | 0.646674 | −0.150083 | 0.344371 | 0.034* | |
| H2B | 0.735565 | −0.157536 | 0.259730 | 0.034* | |
| C3 | 0.6840 (2) | 0.0864 (4) | 0.2882 (2) | 0.0266 (6) | |
| H3A | 0.711327 | 0.130558 | 0.223380 | 0.032* | |
| H3B | 0.742076 | 0.107536 | 0.345374 | 0.032* | |
| C4 | 0.57779 (19) | 0.1850 (3) | 0.31052 (18) | 0.0203 (5) | |
| C5 | 0.48332 (19) | 0.1330 (3) | 0.22378 (17) | 0.0159 (5) | |
| C6 | 0.37500 (19) | 0.2335 (3) | 0.22738 (17) | 0.0157 (5) | |
| H6 | 0.392800 | 0.357187 | 0.229305 | 0.019* | |
| C7 | 0.29530 (18) | 0.1976 (3) | 0.13233 (16) | 0.0150 (5) | |
| H7 | 0.326559 | 0.247100 | 0.069884 | 0.018* | |
| C8 | 0.27205 (19) | 0.0105 (3) | 0.11248 (17) | 0.0144 (5) | |
| H8 | 0.232224 | −0.032713 | 0.171772 | 0.017* | |
| C9 | 0.38119 (18) | −0.0920 (3) | 0.11139 (16) | 0.0141 (5) | |
| H9 | 0.419571 | −0.052008 | 0.050411 | 0.017* | |
| C10 | 0.46211 (19) | −0.0615 (3) | 0.21063 (17) | 0.0162 (5) | |
| C11 | 0.35761 (19) | −0.2846 (3) | 0.09546 (18) | 0.0195 (5) | |
| H11A | 0.421988 | −0.339792 | 0.067248 | 0.023* | |
| H11B | 0.346108 | −0.337965 | 0.163002 | 0.023* | |
| C12 | 0.25746 (19) | −0.3084 (3) | 0.02252 (17) | 0.0174 (5) | |
| C13 | 0.1808 (2) | −0.1948 (3) | −0.01287 (18) | 0.0169 (5) | |
| C14 | 0.19243 (19) | −0.0105 (3) | 0.01221 (18) | 0.0170 (5) | |
| H14 | 0.117939 | 0.033202 | 0.027082 | 0.020* | |
| C15 | 0.09710 (19) | −0.2868 (3) | −0.07485 (19) | 0.0214 (5) | |
| H15 | 0.031927 | −0.241267 | −0.110517 | 0.026* | |
| C16 | 0.1288 (2) | −0.4498 (3) | −0.0727 (2) | 0.0240 (5) | |
| H16 | 0.088574 | −0.539445 | −0.107408 | 0.029* | |
| C17 | 0.5565 (2) | 0.1516 (3) | 0.42506 (18) | 0.0252 (6) | |
| H17A | 0.612996 | 0.209595 | 0.470912 | 0.038* | |
| H17B | 0.559908 | 0.029565 | 0.438823 | 0.038* | |
| H17C | 0.482962 | 0.194371 | 0.438008 | 0.038* | |
| C18 | 0.6012 (2) | 0.3760 (3) | 0.3034 (2) | 0.0274 (6) | |
| H18A | 0.540690 | 0.439604 | 0.330854 | 0.041* | |
| H18B | 0.606793 | 0.407338 | 0.230669 | 0.041* | |
| H18C | 0.671040 | 0.402637 | 0.344118 | 0.041* | |
| C19 | 0.4136 (2) | −0.1444 (3) | 0.30596 (17) | 0.0194 (5) | |
| H19A | 0.444707 | −0.088795 | 0.369703 | 0.029* | |
| H19B | 0.432678 | −0.265020 | 0.308648 | 0.029* | |
| H19C | 0.332817 | −0.131699 | 0.299626 | 0.029* | |
| C20 | 0.2289 (2) | 0.0857 (3) | −0.08241 (18) | 0.0218 (5) | |
| H20A | 0.225048 | 0.207822 | −0.069787 | 0.033* | |
| H20B | 0.179661 | 0.056395 | −0.143969 | 0.033* | |
| H20C | 0.305132 | 0.054200 | −0.093813 | 0.033* | |
| C21 | 0.2732 (2) | 0.3200 (3) | 0.36808 (18) | 0.0204 (5) | |
| C22 | 0.2066 (2) | 0.2519 (4) | 0.44928 (18) | 0.0221 (6) | |
| H22 | 0.205628 | 0.133757 | 0.462953 | 0.026* | |
| C23 | 0.1479 (2) | 0.3580 (4) | 0.50308 (18) | 0.0235 (6) | |
| H23 | 0.153196 | 0.474847 | 0.486769 | 0.028* | |
| C24 | 0.0756 (2) | 0.3140 (4) | 0.58504 (19) | 0.0242 (6) | |
| C25 | 0.0608 (2) | 0.1487 (4) | 0.61904 (19) | 0.0283 (6) | |
| H25 | 0.098725 | 0.058097 | 0.589145 | 0.034* | |
| C26 | −0.0092 (2) | 0.1158 (4) | 0.6966 (2) | 0.0329 (7) | |
| H26 | −0.019633 | 0.002787 | 0.719015 | 0.039* | |
| C27 | −0.0638 (2) | 0.2486 (5) | 0.7412 (2) | 0.0361 (8) | |
| H27 | −0.111276 | 0.226126 | 0.794396 | 0.043* | |
| C28 | −0.0492 (2) | 0.4132 (4) | 0.7086 (2) | 0.0335 (7) | |
| H28 | −0.086528 | 0.503687 | 0.739264 | 0.040* | |
| C29 | 0.0199 (2) | 0.4457 (4) | 0.6310 (2) | 0.0290 (6) | |
| H29 | 0.029684 | 0.558944 | 0.608671 | 0.035* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0156 (8) | 0.0276 (9) | 0.0152 (8) | 0.0023 (7) | 0.0070 (6) | 0.0042 (7) |
| O2 | 0.0289 (9) | 0.0153 (9) | 0.0219 (9) | 0.0013 (7) | −0.0027 (7) | 0.0011 (7) |
| O3 | 0.0202 (8) | 0.0201 (8) | 0.0138 (7) | 0.0030 (7) | 0.0085 (6) | 0.0012 (7) |
| O4 | 0.0332 (11) | 0.0233 (10) | 0.0361 (10) | −0.0011 (8) | 0.0176 (9) | −0.0085 (8) |
| O5 | 0.0184 (9) | 0.0168 (8) | 0.0224 (8) | 0.0066 (7) | 0.0055 (7) | 0.0035 (7) |
| C1 | 0.0210 (13) | 0.0254 (13) | 0.0201 (12) | 0.0091 (10) | −0.0012 (10) | −0.0019 (10) |
| C2 | 0.0227 (13) | 0.0350 (15) | 0.0256 (13) | 0.0130 (12) | −0.0047 (11) | −0.0087 (12) |
| C3 | 0.0183 (12) | 0.0369 (16) | 0.0238 (13) | 0.0043 (11) | −0.0027 (10) | −0.0051 (11) |
| C4 | 0.0183 (11) | 0.0245 (13) | 0.0179 (11) | 0.0006 (11) | 0.0010 (9) | −0.0016 (11) |
| C5 | 0.0167 (11) | 0.0210 (12) | 0.0107 (10) | 0.0020 (9) | 0.0054 (9) | 0.0020 (9) |
| C6 | 0.0185 (11) | 0.0159 (12) | 0.0137 (10) | −0.0002 (9) | 0.0078 (9) | 0.0026 (9) |
| C7 | 0.0151 (11) | 0.0157 (11) | 0.0149 (10) | 0.0051 (10) | 0.0060 (9) | 0.0032 (10) |
| C8 | 0.0152 (11) | 0.0164 (12) | 0.0122 (10) | 0.0021 (9) | 0.0046 (9) | 0.0040 (9) |
| C9 | 0.0161 (11) | 0.0156 (11) | 0.0111 (10) | 0.0038 (9) | 0.0039 (8) | 0.0015 (9) |
| C10 | 0.0189 (12) | 0.0168 (12) | 0.0131 (10) | 0.0042 (9) | 0.0022 (9) | 0.0004 (9) |
| C11 | 0.0240 (12) | 0.0191 (12) | 0.0151 (10) | 0.0053 (11) | −0.0004 (9) | 0.0017 (10) |
| C12 | 0.0228 (12) | 0.0160 (11) | 0.0141 (10) | 0.0004 (10) | 0.0049 (9) | 0.0014 (10) |
| C13 | 0.0164 (11) | 0.0187 (12) | 0.0162 (11) | −0.0003 (9) | 0.0054 (9) | 0.0029 (9) |
| C14 | 0.0138 (11) | 0.0172 (12) | 0.0201 (11) | 0.0034 (9) | 0.0027 (9) | 0.0017 (9) |
| C15 | 0.0161 (11) | 0.0239 (13) | 0.0241 (12) | −0.0018 (10) | 0.0007 (9) | 0.0031 (11) |
| C16 | 0.0242 (13) | 0.0218 (13) | 0.0254 (13) | −0.0047 (11) | −0.0021 (10) | 0.0014 (11) |
| C17 | 0.0281 (14) | 0.0306 (15) | 0.0165 (11) | 0.0030 (11) | −0.0007 (10) | −0.0044 (10) |
| C18 | 0.0245 (13) | 0.0267 (15) | 0.0307 (14) | −0.0021 (11) | 0.0010 (11) | −0.0034 (11) |
| C19 | 0.0291 (13) | 0.0169 (12) | 0.0121 (10) | 0.0043 (10) | 0.0014 (10) | 0.0024 (9) |
| C20 | 0.0290 (13) | 0.0179 (12) | 0.0175 (12) | −0.0022 (11) | −0.0043 (10) | 0.0042 (9) |
| C21 | 0.0181 (12) | 0.0257 (14) | 0.0178 (12) | 0.0002 (10) | 0.0038 (10) | −0.0049 (10) |
| C22 | 0.0197 (12) | 0.0314 (15) | 0.0154 (11) | 0.0009 (10) | 0.0030 (10) | −0.0026 (10) |
| C23 | 0.0179 (12) | 0.0354 (15) | 0.0172 (12) | −0.0010 (11) | 0.0014 (10) | −0.0058 (11) |
| C24 | 0.0134 (12) | 0.0434 (17) | 0.0157 (11) | −0.0003 (11) | 0.0001 (10) | −0.0073 (11) |
| C25 | 0.0214 (13) | 0.0448 (18) | 0.0186 (12) | 0.0038 (11) | 0.0012 (10) | −0.0045 (12) |
| C26 | 0.0265 (14) | 0.0487 (18) | 0.0235 (13) | −0.0032 (13) | 0.0030 (11) | 0.0043 (13) |
| C27 | 0.0252 (14) | 0.064 (2) | 0.0198 (13) | 0.0011 (14) | 0.0094 (11) | −0.0011 (13) |
| C28 | 0.0213 (13) | 0.054 (2) | 0.0265 (14) | 0.0029 (13) | 0.0071 (11) | −0.0092 (14) |
| C29 | 0.0194 (13) | 0.0432 (18) | 0.0247 (13) | 0.0005 (12) | 0.0045 (11) | −0.0060 (13) |
Geometric parameters (Å, º)
| O1—C5 | 1.459 (3) | C11—H11B | 0.9900 |
| O1—H1 | 0.8400 | C12—C13 | 1.343 (3) |
| O2—C16 | 1.381 (3) | C13—C15 | 1.435 (3) |
| O2—C12 | 1.383 (3) | C13—C14 | 1.495 (3) |
| O3—C21 | 1.352 (3) | C14—C20 | 1.536 (3) |
| O3—C6 | 1.446 (3) | C14—H14 | 1.0000 |
| O4—C21 | 1.206 (3) | C15—C16 | 1.343 (4) |
| O5—C7 | 1.441 (3) | C15—H15 | 0.9500 |
| O5—H5 | 0.8400 | C16—H16 | 0.9500 |
| C1—C2 | 1.524 (3) | C17—H17A | 0.9800 |
| C1—C10 | 1.543 (3) | C17—H17B | 0.9800 |
| C1—H1A | 0.9900 | C17—H17C | 0.9800 |
| C1—H1B | 0.9900 | C18—H18A | 0.9800 |
| C2—C3 | 1.520 (4) | C18—H18B | 0.9800 |
| C2—H2A | 0.9900 | C18—H18C | 0.9800 |
| C2—H2B | 0.9900 | C19—H19A | 0.9800 |
| C3—C4 | 1.552 (3) | C19—H19B | 0.9800 |
| C3—H3A | 0.9900 | C19—H19C | 0.9800 |
| C3—H3B | 0.9900 | C20—H20A | 0.9800 |
| C4—C18 | 1.539 (4) | C20—H20B | 0.9800 |
| C4—C17 | 1.547 (3) | C20—H20C | 0.9800 |
| C4—C5 | 1.586 (3) | C21—C22 | 1.479 (3) |
| C5—C6 | 1.538 (3) | C22—C23 | 1.333 (3) |
| C5—C10 | 1.564 (3) | C22—H22 | 0.9500 |
| C6—C7 | 1.522 (3) | C23—C24 | 1.472 (3) |
| C6—H6 | 1.0000 | C23—H23 | 0.9500 |
| C7—C8 | 1.522 (3) | C24—C25 | 1.394 (4) |
| C7—H7 | 1.0000 | C24—C29 | 1.400 (4) |
| C8—C9 | 1.551 (3) | C25—C26 | 1.392 (4) |
| C8—C14 | 1.556 (3) | C25—H25 | 0.9500 |
| C8—H8 | 1.0000 | C26—C27 | 1.392 (4) |
| C9—C11 | 1.558 (3) | C26—H26 | 0.9500 |
| C9—C10 | 1.565 (3) | C27—C28 | 1.383 (5) |
| C9—H9 | 1.0000 | C27—H27 | 0.9500 |
| C10—C19 | 1.555 (3) | C28—C29 | 1.385 (4) |
| C11—C12 | 1.483 (3) | C28—H28 | 0.9500 |
| C11—H11A | 0.9900 | C29—H29 | 0.9500 |
| C5—O1—H1 | 109.5 | C13—C12—O2 | 110.4 (2) |
| C16—O2—C12 | 105.83 (18) | C13—C12—C11 | 129.5 (2) |
| C21—O3—C6 | 116.78 (18) | O2—C12—C11 | 120.0 (2) |
| C7—O5—H5 | 109.5 | C12—C13—C15 | 106.7 (2) |
| C2—C1—C10 | 113.4 (2) | C12—C13—C14 | 121.8 (2) |
| C2—C1—H1A | 108.9 | C15—C13—C14 | 131.5 (2) |
| C10—C1—H1A | 108.9 | C13—C14—C20 | 109.7 (2) |
| C2—C1—H1B | 108.9 | C13—C14—C8 | 108.94 (19) |
| C10—C1—H1B | 108.9 | C20—C14—C8 | 114.22 (19) |
| H1A—C1—H1B | 107.7 | C13—C14—H14 | 107.9 |
| C3—C2—C1 | 112.2 (2) | C20—C14—H14 | 107.9 |
| C3—C2—H2A | 109.2 | C8—C14—H14 | 107.9 |
| C1—C2—H2A | 109.2 | C16—C15—C13 | 106.7 (2) |
| C3—C2—H2B | 109.2 | C16—C15—H15 | 126.7 |
| C1—C2—H2B | 109.2 | C13—C15—H15 | 126.7 |
| H2A—C2—H2B | 107.9 | C15—C16—O2 | 110.4 (2) |
| C2—C3—C4 | 113.4 (2) | C15—C16—H16 | 124.8 |
| C2—C3—H3A | 108.9 | O2—C16—H16 | 124.8 |
| C4—C3—H3A | 108.9 | C4—C17—H17A | 109.5 |
| C2—C3—H3B | 108.9 | C4—C17—H17B | 109.5 |
| C4—C3—H3B | 108.9 | H17A—C17—H17B | 109.5 |
| H3A—C3—H3B | 107.7 | C4—C17—H17C | 109.5 |
| C18—C4—C17 | 105.7 (2) | H17A—C17—H17C | 109.5 |
| C18—C4—C3 | 108.7 (2) | H17B—C17—H17C | 109.5 |
| C17—C4—C3 | 107.6 (2) | C4—C18—H18A | 109.5 |
| C18—C4—C5 | 109.7 (2) | C4—C18—H18B | 109.5 |
| C17—C4—C5 | 117.6 (2) | H18A—C18—H18B | 109.5 |
| C3—C4—C5 | 107.32 (19) | C4—C18—H18C | 109.5 |
| O1—C5—C6 | 99.16 (17) | H18A—C18—H18C | 109.5 |
| O1—C5—C10 | 107.26 (18) | H18B—C18—H18C | 109.5 |
| C6—C5—C10 | 112.19 (19) | C10—C19—H19A | 109.5 |
| O1—C5—C4 | 106.52 (18) | C10—C19—H19B | 109.5 |
| C6—C5—C4 | 114.24 (19) | H19A—C19—H19B | 109.5 |
| C10—C5—C4 | 115.66 (18) | C10—C19—H19C | 109.5 |
| O3—C6—C7 | 107.87 (17) | H19A—C19—H19C | 109.5 |
| O3—C6—C5 | 111.22 (17) | H19B—C19—H19C | 109.5 |
| C7—C6—C5 | 111.28 (18) | C14—C20—H20A | 109.5 |
| O3—C6—H6 | 108.8 | C14—C20—H20B | 109.5 |
| C7—C6—H6 | 108.8 | H20A—C20—H20B | 109.5 |
| C5—C6—H6 | 108.8 | C14—C20—H20C | 109.5 |
| O5—C7—C8 | 107.28 (18) | H20A—C20—H20C | 109.5 |
| O5—C7—C6 | 108.97 (18) | H20B—C20—H20C | 109.5 |
| C8—C7—C6 | 114.34 (19) | O4—C21—O3 | 124.5 (2) |
| O5—C7—H7 | 108.7 | O4—C21—C22 | 125.8 (2) |
| C8—C7—H7 | 108.7 | O3—C21—C22 | 109.6 (2) |
| C6—C7—H7 | 108.7 | C23—C22—C21 | 119.4 (2) |
| C7—C8—C9 | 111.26 (18) | C23—C22—H22 | 120.3 |
| C7—C8—C14 | 109.65 (18) | C21—C22—H22 | 120.3 |
| C9—C8—C14 | 113.85 (17) | C22—C23—C24 | 127.1 (3) |
| C7—C8—H8 | 107.3 | C22—C23—H23 | 116.4 |
| C9—C8—H8 | 107.3 | C24—C23—H23 | 116.4 |
| C14—C8—H8 | 107.3 | C25—C24—C29 | 118.9 (2) |
| C8—C9—C11 | 111.34 (18) | C25—C24—C23 | 123.3 (2) |
| C8—C9—C10 | 112.74 (17) | C29—C24—C23 | 117.9 (3) |
| C11—C9—C10 | 110.70 (18) | C26—C25—C24 | 120.3 (3) |
| C8—C9—H9 | 107.3 | C26—C25—H25 | 119.8 |
| C11—C9—H9 | 107.3 | C24—C25—H25 | 119.8 |
| C10—C9—H9 | 107.3 | C27—C26—C25 | 119.9 (3) |
| C1—C10—C19 | 109.14 (19) | C27—C26—H26 | 120.1 |
| C1—C10—C5 | 107.69 (19) | C25—C26—H26 | 120.1 |
| C19—C10—C5 | 113.40 (18) | C28—C27—C26 | 120.3 (3) |
| C1—C10—C9 | 108.06 (17) | C28—C27—H27 | 119.9 |
| C19—C10—C9 | 109.40 (18) | C26—C27—H27 | 119.9 |
| C5—C10—C9 | 109.01 (18) | C27—C28—C29 | 119.8 (3) |
| C12—C11—C9 | 109.77 (19) | C27—C28—H28 | 120.1 |
| C12—C11—H11A | 109.7 | C29—C28—H28 | 120.1 |
| C9—C11—H11A | 109.7 | C28—C29—C24 | 120.9 (3) |
| C12—C11—H11B | 109.7 | C28—C29—H29 | 119.6 |
| C9—C11—H11B | 109.7 | C24—C29—H29 | 119.6 |
| H11A—C11—H11B | 108.2 | ||
| C10—C1—C2—C3 | −56.4 (3) | C4—C5—C10—C9 | −170.95 (17) |
| C1—C2—C3—C4 | 56.2 (3) | C8—C9—C10—C1 | −171.20 (19) |
| C2—C3—C4—C18 | −171.4 (2) | C11—C9—C10—C1 | 63.3 (2) |
| C2—C3—C4—C17 | 74.6 (3) | C8—C9—C10—C19 | 70.1 (2) |
| C2—C3—C4—C5 | −52.8 (3) | C11—C9—C10—C19 | −55.4 (2) |
| C18—C4—C5—O1 | 52.4 (2) | C8—C9—C10—C5 | −54.4 (2) |
| C17—C4—C5—O1 | 173.2 (2) | C11—C9—C10—C5 | −179.89 (18) |
| C3—C4—C5—O1 | −65.5 (2) | C8—C9—C11—C12 | 36.7 (2) |
| C18—C4—C5—C6 | −56.0 (2) | C10—C9—C11—C12 | 162.98 (17) |
| C17—C4—C5—C6 | 64.8 (3) | C16—O2—C12—C13 | 0.1 (2) |
| C3—C4—C5—C6 | −173.9 (2) | C16—O2—C12—C11 | 176.0 (2) |
| C18—C4—C5—C10 | 171.51 (19) | C9—C11—C12—C13 | −12.6 (3) |
| C17—C4—C5—C10 | −67.7 (3) | C9—C11—C12—O2 | 172.36 (19) |
| C3—C4—C5—C10 | 53.6 (3) | O2—C12—C13—C15 | −0.1 (3) |
| C21—O3—C6—C7 | −98.4 (2) | C11—C12—C13—C15 | −175.5 (2) |
| C21—O3—C6—C5 | 139.3 (2) | O2—C12—C13—C14 | −179.1 (2) |
| O1—C5—C6—O3 | 178.25 (17) | C11—C12—C13—C14 | 5.5 (4) |
| C10—C5—C6—O3 | 65.3 (2) | C12—C13—C14—C20 | 103.5 (2) |
| C4—C5—C6—O3 | −68.9 (2) | C15—C13—C14—C20 | −75.2 (3) |
| O1—C5—C6—C7 | 58.0 (2) | C12—C13—C14—C8 | −22.2 (3) |
| C10—C5—C6—C7 | −55.0 (2) | C15—C13—C14—C8 | 159.1 (2) |
| C4—C5—C6—C7 | 170.81 (19) | C7—C8—C14—C13 | 173.58 (18) |
| O3—C6—C7—O5 | 50.8 (2) | C9—C8—C14—C13 | 48.2 (2) |
| C5—C6—C7—O5 | 173.09 (18) | C7—C8—C14—C20 | 50.6 (2) |
| O3—C6—C7—C8 | −69.2 (2) | C9—C8—C14—C20 | −74.8 (3) |
| C5—C6—C7—C8 | 53.1 (2) | C12—C13—C15—C16 | 0.0 (3) |
| O5—C7—C8—C9 | −172.61 (16) | C14—C13—C15—C16 | 178.9 (2) |
| C6—C7—C8—C9 | −51.7 (2) | C13—C15—C16—O2 | 0.0 (3) |
| O5—C7—C8—C14 | 60.5 (2) | C12—O2—C16—C15 | −0.1 (3) |
| C6—C7—C8—C14 | −178.51 (17) | C6—O3—C21—O4 | −9.1 (3) |
| C7—C8—C9—C11 | 177.74 (18) | C6—O3—C21—C22 | 171.78 (18) |
| C14—C8—C9—C11 | −57.7 (2) | O4—C21—C22—C23 | 5.2 (4) |
| C7—C8—C9—C10 | 52.6 (2) | O3—C21—C22—C23 | −175.7 (2) |
| C14—C8—C9—C10 | 177.15 (19) | C21—C22—C23—C24 | 178.9 (2) |
| C2—C1—C10—C19 | −70.0 (3) | C22—C23—C24—C25 | 1.2 (4) |
| C2—C1—C10—C5 | 53.5 (3) | C22—C23—C24—C29 | −179.2 (2) |
| C2—C1—C10—C9 | 171.1 (2) | C29—C24—C25—C26 | 0.7 (4) |
| O1—C5—C10—C1 | 64.7 (2) | C23—C24—C25—C26 | −179.7 (2) |
| C6—C5—C10—C1 | 172.59 (17) | C24—C25—C26—C27 | −0.7 (4) |
| C4—C5—C10—C1 | −53.9 (2) | C25—C26—C27—C28 | 0.3 (4) |
| O1—C5—C10—C19 | −174.41 (18) | C26—C27—C28—C29 | 0.1 (4) |
| C6—C5—C10—C19 | −66.6 (2) | C27—C28—C29—C24 | −0.1 (4) |
| C4—C5—C10—C19 | 66.9 (3) | C25—C24—C29—C28 | −0.3 (4) |
| O1—C5—C10—C9 | −52.3 (2) | C23—C24—C29—C28 | −179.9 (2) |
| C6—C5—C10—C9 | 55.6 (2) |
Hydrogen-bond geometry (Å, º)
Cg1 is the centroid of the O2/C12–C16 furan ring.
| D—H···A | D—H | H···A | D···A | D—H···A |
| O5—H5···O2i | 0.84 | 2.16 | 2.924 (2) | 151 |
| C3—H3A···Cg1ii | 0.98 | 2.94 | 3.896 (3) | 163 |
| C17—H17C···O3 | 0.98 | 2.40 | 3.091 (3) | 127 |
Symmetry codes: (i) x, y+1, z; (ii) −x+1, y+1/2, −z.
Funding Statement
This work was funded by University of Benin grant . The World Academy of Sciences grant 3240287190 to K. Osahon Ogbeide. University of Karachi grant .
References
- Birnbaum, K. B. & Ferguson, G. (1969). Acta Cryst. B25, 720–730.
- Bruker (2000). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA.
- Farrugia, L. J. (2012). J. Appl. Cryst. 45, 849–854.
- Fun, H.-K., Yodsaoue, O., Karalai, C. & Chantrapromma, S. (2010). Acta Cryst. E66, o2059–o2060. [DOI] [PMC free article] [PubMed]
- Jiang, R. W., Ma, S. C., But, P. P. H. & Mak, T. C. (2001). J. Nat. Prod. 64, 1266–1272. [DOI] [PubMed]
- Jiang, R. W., Ma, S. C., He, Z. D., Huang, X. S., But, P. P. H., Wang, H., Chan, S., Ooi, V. E., Xu, H. & Mak, T. C. W. (2002). Bioorg. Med. Chem. 10, 2161–2170. [DOI] [PubMed]
- Kitagawa, I., Simanjuntak, P., Watano, T., Shibuya, H., Fujii, S., Yamagata, Y. & Kobayashi, M. (1994). Chem. Pharm. Bull. 42, 1798–1802.
- McKinnon, J. J., Spackman, M. A. & Mitchell, A. S. (2004). Acta Cryst. B60, 627–668. [DOI] [PubMed]
- Parsons, S., Flack, H. D. & Wagner, T. (2013). Acta Cryst. B69, 249–259. [DOI] [PMC free article] [PubMed]
- Patel, S. S., Verma, N. K., Chatterjee, C. & Gauthaman, K. (2010). Int. J. Appl. Res. Nat. Prod, 3, 1–5.
- Pranithanchai, W., Karalai, C., Ponglimanont, C., Subhadhirasakul, S. & Chantrapromma, K. (2009). Phytochemistry, 70, 300–304. [DOI] [PubMed]
- Rao, Y. K., Fang, S. H. & Tzeng, Y. M. (2005). J. Ethnopharmacol. 100, 249–253. [DOI] [PubMed]
- Roach, J. S., McLean, S., Reynolds, W. F. & Tinto, W. F. (2003). J. Nat. Prod. 66, 1378–1381. [DOI] [PubMed]
- Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
- Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8.
- Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8.
- Spackman, M. A. & Jayatilaka, D. (2009). CrystEngComm, 11, 19–32.
- Spackman, M. A., McKinnon, J. J. & Jayatilaka, D. (2008). CrystEngComm, 10, 377–388.
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S2056989018002499/is5486sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989018002499/is5486Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989018002499/is5486Isup3.cml
CCDC reference: 1823530
Additional supporting information: crystallographic information; 3D view; checkCIF report






