Table 4.
BUSCO alignment for assembly completeness between single assemblies, clustered assemblies and reference assemblies.
| Assembly | BUSCO Notation Assessment |
||||||
|---|---|---|---|---|---|---|---|
| Total BUSCO groups searched | Total complete (%) | Single-copy BUSCOs (%) | Duplicated BUSCOs (%) | Fragmented BUSCOs (%) | Missing BUSCOs (%) | % Total complete and fragmented BUSCOs | |
| Trinity-assembly | 956 | 91.53 | 21.03 | 70.50 | 5.75 | 2.72 | 97.28 |
| CLC-assembly | 956 | 87.87 | 22.07 | 65.79 | 8.58 | 3.56 | 96.44 |
| OASES-assembly | 956 | 27.20 | 13.18 | 14.02 | 55.13 | 17.68 | 82.32 |
| SOAP-assembly | 956 | 74.37 | 35.15 | 39.23 | 19.14 | 6.49 | 93.51 |
| CDHIT-clustered | 956 | 92.99 | 10.04 | 82.95 | 4.71 | 2.30 | 97.70 |
| Oases-clustered | 956 | 92.68 | 3.35 | 89.33 | 4.92 | 2.41 | 97.59 |
| CAP3-assembled | 956 | 92.78 | 11.72 | 81.07 | 4.60 | 2.62 | 97.38 |
| SoGI database | 956 | 46.65 | 26.67 | 19.98 | 34.41 | 18.93 | 81.07 |
| Unigene set | 956 | 79.60 | 63.81 | 15.79 | 11.40 | 9.00 | 91.00 |