Correction
Following the publication of this article [1], the authors found that they incorrectly reported the BUSCO completeness for the PhyloFish brown trout and European whitefish transcriptomes. This was due to an error in their TransDecoder pipeline and restricted to those two datasets and their interpretation. Carruthers et al. apologise for this misreported result and thank the authors of the PhyloFish database for bringing it to their attention.
The correct version of Table 3 has been included in this correction.
Table 3.
Summary of the complete, duplicated, fragmented and missing orthologs inferred from Benchmarking Universal Single-Copy Orthologs (BUSCO) search against the 4584 single-copy orthologs for Actinopterygii
| BUSCO statistic | Atlantic salmon | Brown trout | Arctic charr | European whitefish | PhyloFish brown trout | PhyloFish European whitefish | NCBI Atlantic salmon RefSeq Proteins |
|---|---|---|---|---|---|---|---|
| Complete BUSCOs | 3461 (79%) | 3596 (78%) | 3589 (78%) | 3512 (76%) | 4254 (92%) | 4202 (91%) | 4476 (97%) |
| Complete -single-copy BUSCOs | 1900 (42%) | 1897 (41%) | 1988 (44%) | 1938 (42%) | 2327 (50%) | 2444 (53%) | 1398 (30%) |
| Complete - duplicated BUSCOs | 1741 (37%) | 1699 (37%) | 1601 (34%) | 1574 (34%) | 1927 (43%) | 1758 (38%) | 3078 (67%) |
| Fragmented BUSCOs | 439 (10%) | 424 (10%) | 431 (10%) | 452 (11%) | 83 (1.8%) | 113 (2.4%) | 80 (1.7%) |
| Missing BUSCOs | 504 (10%) | 564 (12%) | 564 (12%) | 620 (13%) | 247 (5.3%) | 269 (5.8%) | 28 (0.6%) |
Footnotes
The original article can be found online at 10.1186/s12864-017-4379-x
Reference
- 1.Carruthers M, et al. De novo transcriptome assembly, annotation and comparison of four ecological and evolutionary model salmonid fish species. BMC Genomics. 2018;19:32. doi: 10.1186/s12864-017-4379-x. [DOI] [PMC free article] [PubMed] [Google Scholar]