Abstract
Emerging evidence has identified that long non-coding RNAs (lncRNAs) may play an important role in the pathogenesis of many cancers, pancreatic cancer (PC) included. However, the role of linc00462 in PC remains unclear. The aim of our present study was to investigate the potential functions of linc00462 in PC and to identify the underlying mechanisms of action. CCK8 assay, transwell assay, cell cycle assay, cell apoptosis assay, EdU assay, western blot assay, cell adhesion assay, HE staining, IF staining, ELISA assay, vivo growth and metastasis assay, and colony formation assay were performed. We demonstrated that OSM mediated up-regulation of linc00462 promoted cell proliferation by accelerating cell cycle process and inhibiting cell apoptosis and adhesion in vitro, enhanced cell migration and invasion by accelerating EMT process, promoted tumor growth and matastasis in vivo and was associated with large tumor size, poor tumor differentiation, TNM stage and distant metastasis in patients of PC. In addition, we demonstrated that linc00462 was a target of miR-665. Linc00462 overexpression enhanced the expression levels of TGFBR1 and TGFBR2, and thus activated the SMAD2/3 pathway in PC cells. In conclusion, linc00462/miR-665/TGFBR1/2 regulatory network may shed light on tumorigenesis in PC.
Introduction
Pancreatic cancer (PC) is one of the most commonly diagnosed cancers and there have been few advances in treatment in the past decades1. For many years, Gemcitabine was the only drug approved to treat this malignant disease2. However, the resistance of pancreatic cancer cells to Gemcitabine occurs repeatedly in patients during the process of treatment and is identified as one of the major reason for cancer progression3. Furthermore, the epithelial-mesenchymal transition (EMT) in vitro and metastasis in vivo are closely involved with the pathogenesis and progression of PC4–6. More importantly, there are neither validated predictive nor prognostic biomarkers for this lethal disease. Thus, it is imperative to investigate the molecular mechanism underlying the development and progression of PC and explore the targeted signaling pathways for cancer treatment.
Long non-coding RNAs (lncRNAs) are RNA molecules over 200 nt in length that do not encode proteins7,8. Recent studies have revealed that lncRNAs are involved in gene regulation and various aspects of tumor cellular homeostasis, including tumor growth, development, differentiation, proliferation, apoptosis and metastasis7,9,10. For example, up-regulation of linc00673 promoted cell proliferation, cell migration, cell invasion and EMT in non-small cell lung cancer11. In pancreatic cancer, data also demonstrated that some differentially regulated lncRNAs are correlated with malignant phenotype and prognosis in patients12–15. For example, lncRNA TUG1 enhanced the proliferation and migration of pancreatic cancer cells through EMT pathway16. In addition, knock-down of HOTAIR suppressed tumor growth and also reduced the expression of notch3 in pancreatic cancer17. Gong et al. reported that linc00462 was significantly upregulated in HCC tissues and overexpression of linc00462 resulted in a much more aggressive oncogenic phenotype via activing the PI3K/AKT signaling pathwayin HCC cells18. However, the expression level and biological function of linc00462 in PC still remains unknown.
Various molecular mechanisms of lncRNA underlying cancer development have been proposed19. One of the important mechanisms is that the lncRNA acts as a miRNA sponge to regulate the miRNA expression, which inturn regulates the miRNA target genes indirectly20. For example, long non-coding RNA X-inactive specific transcript (XIST) is involved in the development and progression of PC through the miR-133a/EGFR pathway21. Thus the investigation on whether linc00462 regulating the development and progression of PC and acting as a ceRNA seems to be promising.
In the present study, we identified the oncogenic role of linc00462 which may function as an effective invasiveness marker for PC patients. We found that miR-655 was a potential target of linc00462 by using the bioinformatics software of RegRNA 2.0. We then explored the role of miR-655 in PC cells, which demonstrated the tumor suppressive role of miR-665 via targeting TGFBR1 and TGFBR2 by regulating SMAD2/SMAD3 pathway. Therefore, our results may provide a new insight into understanding the network of linc00462/miR-665/TGFBR1/TGFBR2 in PC and this discovery also provides atheoretical basis for the prevention and treatment for PC.
Results
Linc00462 is high expression in PC and is upregulated by OSM in PC cells
To confirm the expression level of linc00462, we detected the linc00462 level in 35 paired PC tissues and the adjacent pancreatic tissues. As shown in Fig. 1a, the expression level of linc00462 was significantly higher in tumor tissues (Fig. 1a), which is correlated with large tumor size, poor tumor differentiation, TNM stage and distant metastasis in patients with pancreatic cancer (Table 1). In addition, we examined the expression level of linc00462 in five PC cell lines (PANC-1, SW1990, BxPC-3, AsPC-1, and CFPAC-1) and a normal human pancreatic normal pancreatic epithelial cell line HPDE6-C7. Compared with the HPDE6-C7 cells, PC cells exhibited significantly higher expression level of linc00462 (Fig. 1b). Furthermore, Smigiel has been reported that OSM could regulate an EMT/CSC plasticity program that promotes tumorigenic properties in PC22. We then examined whether OSM regulate the expression level of linc00462 in PC cells. As shown in Fig. 1c, the expression level of linc00462 was markedly elevated under OSM treated at different time in HPDE6-C7 and PANC-1 cells (Fig. 1c). Based on the results of the expression level of linc00462, we hypothesized that linc00462 re-expression might promote cell proliferation. PANC-1 and CFPAC-1 were chosen for subsequent functional studies, because of the lowest or highest expression level of linc00462.
Table1.
Variable | linc00462 expression | p-value | |
---|---|---|---|
Low | High | ||
Age | |||
<60 | 11 | 8 | |
≥60 | 6 | 10 | 0.194 |
Gender | |||
Male | 14 | 10 | |
Female | 3 | 8 | 0.089 |
Tumor size | |||
<3 | 10 | 3 | |
≥3 | 7 | 15 | 0.012a |
Histological grade | |||
High | 12 | 4 | |
Low | 3 | 14 | 0.007a |
TNM stage | |||
I–II | 14 | 2 | |
III–IV | 3 | 16 | 0.001a |
Distant metastasis | |||
Postive | 5 | 17 | |
Negetive | 12 | 1 | 0.001a |
aχ2 test. p-values in bold print indicate statistically significant differences
TNM tumor node metastasis
ap < 0.05
Linc00462 promotes cell proliferation in PC cells
Transfection efficiency of the plasmids of overexpression and knockdown for linc00462 was detected by RT-qPCR assay (Fig. 2a). CCK-8 and colony formation assay showed that overexpression of linc00462 obviously promoted cell proliferation in PANC-1 cells; On the contrary, linc00462 knockdown significantly reduced the proliferation ability of the CFPAC-1 cells (Fig 2b, c). Moreover, EdU proliferation assays showed that linc00462 overexpression increased EdU incorporated cell proportion and linc00462 knockdown reduced EdU incorporated cell proportion (Fig 2d). In the aspect of cell cycle, overexpression of linc00462 obviously decreased the cell population of G0/G1 phase accompanied by an increase of cell population in the S + G2 phase in PANC-1 cells; knockdown of linc00462 increased the number of G0/G1 phase in CFPAC-1 cells and decreased the cells in S + G2 phase; In addition, linc00462 overexpression promoted proliferation index (PI, PI = (G2 + S)/G1), linc00462 knockdown decreased proliferation index (Fig 2e). Furthermore, we found that overexpression of linc00462 markedly promoted cyclin D1, CDK4 and cyclin E1 expression level in PC cells using western blot assay, which were the important regulators of cell cycle (Fig 2f). Cell apoptosis analysis showed a lower apoptosis rate when linc00462 was overexpressed in PANC-1 cells and a higher apoptosis rate under the knockdown of linc00462 in CFPAC-1 cells (Fig. 2g). In addition, Hoechst staining also demonstrated that linc00462 overexpression reduced cell apoptosis in PANC-1 cells and linc00462 knockdown promoted cell apoptosis in CFPAC-1 cells (Fig 2h). Consistently, the protein levels of cleaved caspase 3 and PARP and BAX were decreased while the levels of BCL2 were increased after linc00462 overexpression in PANC-1 cells (Fig 2i).
Upregulation of linc00462 facilitates the cell migration, invasion, EMT, and tumor growth and metastasis and inhibits the cell adhesion
The migration and invasion ability of PC cells were determined by transwell migration and invasion assay, respectively. Results showed that the number of migrated and invaded cells was significantly increased treated with linc00462 in PANC-1 cells compared to the group transfected with pcDNA3 (Fig. 3a, b). The cell-matrix adhesion assay indicated that adhesion activities of PANC-1 cells treated with linc00462 were inhibited compared with the control groups, while linc00462 knockdown in CFPAC-1 cells enhanced cell adhesion ability (Fig. 3c). To investigate whether linc00462 could regulate EMT, PC cells were transfected with linc00462 overexpression or knockdown plasmids. Interestingly, western blot analysis showed that overexpression of linc00462 in PANC-1 cells increased the expression level of the molecular marker of mesenchymal cells (ICAM-1, Vimentin, Twist 1, MMP2, and MMP9) and decreased the expression level of E-cadherin, which is the marker of epithelial cells; linc00462 knockdown in CFPAC-1 cells has the opposite effects (Fig. 3d). In vivo, the average weight of tumors increased in the linc00462 treated group compared to the negative control group (Fig. 3e, f). Furthermore, we examined the effects of linc00462 on tumor metastasis using the linc00462 overexpression cell lines and the results showed that the mice injected with PANC-1-linc00462 cells metastasized more efficiently than that injected with the PANC-1-pcDNA3 group. Subsequently, the lung, liver, colorectum and spleen sections were prepared and stained with hematoxylin andeosin (HE), and we detected bigger and more metastatic foci in the samples from mice injected with PANC-1-linc00462 cells than that with control cells (Fig. 3g).
Linc00462 acts as a molecular sponge for miR-665 in PC cells
Then, we examine the level of miR-665 in PANC-1 and CFPAC-1 cells and the results showed that the miR-665 level is higher in PANC-1 cells than that in CFPAC-1 cells (Fig. 4a), which negatively was correlated with the expression level of linc00462. As shown in Fig. 4b, RT-qPCR analysis showed that the overexpression and knockdown plasmids of miR-665 were effective (Fig. 4b). Our bioinformatic analysis using RegRNA 2.0 revealed the putative complementary sequences for the seed region of miR-665 in linc00462 (Fig. 4c). To determine whether linc00462 is the target of miR-665, we constructed EGFP reporter vectors containing WT or mutant miR-665 putative binding sites in linc00462. As shown in Fig. 4d, pri-miR-665 decreased and ASO-miR-665 increased the EGFP intensity of cells transfected with the WT reporter vector, while further use of linc00462 mut had no influence (Fig. 4d). Enhanced expression of miR-665 resulted in a significant downregulation of linc00462, while knockdown of miR-665 in PANC-1 cells obviously increased the expression level of linc00462 (Fig. 4e). In addition, ectopic expression of linc00462 significantly decreased the miR-665 levels, while knockdown of linc00462 markedly enhanced the miR-665 levels. However, we did not observe a significant difference in miR-665 level after transfection with linc00462 mut (Fig. 4f). Results from the CCK-8 assay showed overexpression of miR-665 reduced cell proliferation, while co-transfected with linc00462 and pri-miR-665 partly enhanced cell proliferation (Fig. 4g); In contrast, linc00462 knockdown resulted in the opposite effect of cell proliferation. As shown in Fig. 4h, pri-miR-665 markedly increased the number of cells in G1 phase and decreased the number in S + G2 phase, while co-transfection with pri-miR-665 and linc00462 showed that linc00462 abolished the cell cycle-inhibited function of miR-665. Similarly, co-transfection with ASO-miR-665 and shR-linc00462 showed that shR-linc00462 abolished the cell cycle-accelerated function of ASO-miR-665 (Fig. 4h). The expression levels of cleaved caspase 3 and PARP and BAX were increased and the levels of BCL2 were decreased in pri-miR-665 transfected cells, which demonstrate that miR-665 overexpression promoted cell apoptosis (Fig. 4i). The transwell assay showed that migration and invasion of PC cells treated with pri-miR-665 was significantly reduced compared with that of the control. Meanwhile, overexpression of linc00462 partly abolished the reducing effects of on cell migration and invasion. In addition, knockdown of linc00462 abolished the effects of ASO-miR-665 to enhance cell migration and invasion (Fig. 4j).
Linc00462 increases the expression of the endogenous miR-665 target, TGFBR1 and TGFBR2
Bioinformatics prediction suggested hundreds of candidate targets formiR-665; we chose TGFBR1 and TGFBR2 as putative targets for further study after considering available functional knowledge (Fig. 5a, b). To confirm the direct binding effect of miR-665 to TGFBR1 and TGFBR2 3′UTR, we performed an EGFP reporter assay using EGFP reporter vectors containing either the wild-type 3′UTR or a mutant 3′UTR of TGFBR1 and TGFBR2 (Fig. 5c). Overexpression of miR-665 decreased the EGFP activity of the wild-type 3′UTR of TGFBR1 and TGFBR2 in CFPAC-1 cells, miR-665 knockdown increased the EGFP activity of the wild-type 3′UTR of TGFBR1 and TGFBR2 in PANC-1 cells (Fig. 5d). However, miR-665 overexpression or knockdown did not have any influence on the EGFP activity of the TGFBR1 and TGFBR2 3′UTR mut (Fig. 5e). Accordingly, alteration of miR-665 expression inversely regulated both TGFBR1 and TGFBR2 at mRNA and protein abundance in PC cells (Fig. 5f, g). Ectopic expression of linc00462 increased TGFBR1 and TGFBR2 mRNA and protein levels in PANC-1 cells and that depletion of linc00462 significantly decreased TGFBR1 and TGFBR2 mRNA and protein levels in CFPAC-1 cells (Fig. 5h, i).
TGFBR1 and TGFBR2 reverses miR-665 overexpression mediated reducing of proliferation, migration, invasion, and EMT
To further validate the association among linc00462, miR-665 and TGFBR1 and TGFBR2, we then studied the effects of TGFBR1 and TGFBR2 on cell proliferation (Fig. 6a, b), migration (Fig. 6c), invasion (Fig. 6d) and EMT (Fig. 6e). Overexpression of TGFBR1 and TGFBR2 increased cell proliferation, migration, invasion and EMT in CFPAC-1 cells. We observed that after transfected with pri-miR-665, TGFBR1 or TGFBR2 mediated cell malignant behaviors promotion in CFPAC-1 cells was partly rescued. We also observed that after transfected with shR-TGFBR1 or shR-TGFBR2, linc00462 mediated cell malignant behaviors promotion in CFPAC-1 cells was partly rescued (Fig. 6a–f).
Linc00462 promotes and miR-665 inhibits the malignant phenotype of PC by regulating the TGFBR1 and TGFBR2 induced SMAD2/SMAD3 signaling pathway
Some papers reported that activated TGF-β type I receptor subsequently induces the recruitment and phosphorylation of the receptor-regulated SMADs, SMAD2 and SMAD3 to form heteromeric complexes with the common mediator SMAD4. The SMAD complexes transmited the signals of TGF-β from cell surface to nucleus and bind to the target genes to exhibit the regulated role23–25. Our data showed that linc00462 overexpression significantly increased the expression levels of p-SMAD2 and p-SMAD3. miR-665 overexpression significantly decreased the expression levels of p-SMAD2 and p-SMAD3. However, co-transfected with linc00462 and miR-665 reversed the up-regulation induced by linc00462 overexpression or down-regulation induced by miR-665 overexpression of p-SMAD2 and p-SMAD3 (Fig. 7a). To determine whether linc00462 activation of SMAD2 and SMAD3 require TGFBR1 and TGFBR2 expression, cells were treated for 2 h the TGFBR1/2 inhibitor SB431542. The results showed that alteration of linc00462, miR-665 or linc00462 and miR-665 has no difference on the expression level of p-SMAD2 and p-SMAD3, which indicate TGFBR1 and TGFBR2 was indispensable for activation of SMAD2/SMAD3 signaling pathway (Fig. 7b). To investigate the transformation of SMAD2/3 from cell surface to nucleus, IF assay was performed. The results showed that overexpression of linc00462 increased the nuclear distribution of SMAD2/3. Overexpression of miR-665 decreased the nuclear distribution of SMAD2/3. And co-transfected with linc00462 and pri-miR-665 partly rescued the effects of linc00462 or miR-665 in CFPAC-1 cells (Fig. 7c). However, no significant difference about the nuclear distribution of SMAD2/3 was observed among the respective groups in cells treated with SB431542 (Fig. 7d). Furthermore, treatment with linc00462 markedly enhanced the expression of collagen 1, collagen 3 and fibronectin mRNA level by RT-qPCR assay and protein level by ELISA assay in CFPAC-1 cells. Co-transfected with linc00462 and pri-miR-665 partly rescued the effects of linc00462 or miR-665 on collagen 1, collagen 3, and fibronectin levels in CFPAC-1 cells (Fig. 7e–g). In contrast, no significant difference was observed about the expression level of collagen 1, collagen 3 and fibronectin in cells treated with SB431542 (Fig. 7f–h).
Discussion
LncRNAs have emerged as a new layer of gene regulation in many diseases, at the transcriptional and posttranscriptional level of the gene regulatory network26–28. Up to now, emerging evidences have focused on the role and the function of lncRNAs in PC progression29–31. Linc00462 was located on chromosome 13 and was approximately 1023 nt in length, which was upregulated in HCC tissues compared with normal tissues18. However, no relevant report about the relationship between linc00462 and the progression of PC is reported now.
In this study, we reported that linc00462, which could be activated by OSM, was significantly upregulated in PC tissues and cell lines compared with the control groups. Its expression level was significantly correlated with tumor size, tumor differentiation, TNM stage, and distant metastasis. Furthermore, overexpression of linc00462 significantly promoted cell proliferation, migration, invasion and cell cycle process and inhibited cell apoptosis and cell adhesion by inducing EMT in vitro functional assays. Moreover, we demonstrated that linc00462 plays an oncogenic role in PC by promoting tumor growth and metastasis using the vivo animal model. Taken together, these data indicate that linc00462 functions as an oncogene and promotes PC malignant progression. Linc00462 may represent a novel therapeutic target for PC treatment.
However, the molecular mechanisms by which linc00462 promote cell proliferation, cell migration, cell invasion and tumor metastasis remain unclear. Previous studies identified that lncRNAs and miRNAs may communicate with and co-regulate each other via multiple mechanisms, the competing endogenous RNA (ceRNA) hypothesis included32,33. To investigate whether linc00462 regulate PC progression through the ceRNA hypothesis, we found binding sites between linc000462 and miR-665, and thus carried out the follow-up study using bioinformatics analysis. In addition, EGFP reporter assay and RT-qPCR assay showed that linc00462 suppressed the expression of miR-665 via sponging miR-665 in the PC cells. MiR-665 plays a suppressive role in osteosarcoma34, inflammatory bowel disease35, prostate cancer36, and severe heart failure37. However, the function of miR-665 in PC remains unknown. We reported that overexpression of miR-665 in PC cells inhibited cell proliferation, cell cycle process, cell migration and cell invasion, and promoted cell apoptosis. In addition, bioinformatics tools were used to identify the potential downstream targets of miR-665. The analysis suggested that TGFBR1 and TGFBR2 might be the downstream targets of miR-665.
Wang reported that miR-130a-3p might play a critical role in negatively regulating HSC activation and proliferation in the progression of nonalcoholic fibrosing steatohepatitis by directly targeting TGFBR1 and TGFBR2 via the TGF-β/SMAD signaling pathway38. Wang et al. reported that miR-133a may suppress cell invasion by targeting TGFBR1 in non-small cell lung carcinoma39. Harazono et al. reported overexpression of miR-655 not only induced the up-regulation of E-cadherin and downregulation of typical EMT-inducers but also suppressed migration and invasion of mesenchymal-like cancer cells accompanied by a morphological shift toward the epithelial phenotype by targeting ZEB1 and TGFBR240. However, the role of TGFBR1 and TGFBR2 in PC is unclear. In this study, we showed that overexpression of TGFBR1 and TGFBR2 promoted cell proliferation, cell migration, cell invasion and EMT in PC cells. Further exploration showed that linc00462 shares the same response elements for miR-665 with TGFBR1 and TGFBR2. Enhanced expression of linc00462 increased the mRNA and protein levels of TGFBR1 and TGFBR2.
Smads can integrate multiple signaling pathways and directly regulate the expression of target genes in TGF-β-activated cells41. Binding of TGF-β to its receptor leads to activation of the transcription factors, Smad2/3, and then translocate into the nucleus where the factors can induce transcription of target genes42. Our results showed linc00462 overexpression significantly increased but miR-665 overexpression obviously decreased the expression levels of p-SMAD2 and p-SMAD3 and the nuclear distribution of SMAD2/3. However, alteration of linc00462, miR-665 or linc00462 and miR-665 has no difference on the expression levels of p-SMAD2 and p-SMAD3 and the nuclear distribution of SMAD2/3 treated with SB431542.
Considering the importance of the proposed mechanisms of action, we turned our attention to the SMAD2/3 pathways involved in stimulation of collagen expression. Thus, we detected the expression levels of collagen 1, collagen 3 and fibronectin by RT-qPCR and ELISA assay, and the results showed that linc00462 overexpression markedly enhanced and miR-665 overexpression obviously attenuated the expression of collagen 1, collagen 3, and fibronectin at mRNA and protein levels. However, no significant difference was observed about the expression level of collagen 1, collagen 3, and fibronectin in cells treated with SB431542.
In conclusion, OSM-mediated linc00462 via miR-665/TGFBR1-TGFBR2/smad2/3 pathway was a crucial event during the cell proliferation, cell migration and invasion and tumor metastasis in PC (Fig. 8). Our findings could be useful for developing novel therapeutics against metastatic PC.
Methods and materials
Patients
Pancreatic samples were obtained from the Department of Hepatopacreatobiliary, Affiliated Hospital of Qingdao University. All patients did not receive chemotherapy or radiotherapy before the surgery. All tissue samples were derived from untreated patients undergoing surgery, and were frozen in liquid nitrogen immediately and stored at −80 °C. The written informed consents were obtained from all enrolled patients, and all relevant investigations were performed according to the principles of the declaration of Helsinki. The study was approved by the ethical review committees of Affiliated Hospital of Qingdao University.
Cell lines
Human pancreatic cancer cell lines SW1990, BxPC-3, PANC-1, AsPC-1, and CFPAC-1 were obtained from the American Type Culture Collection. Normal pancreatic cells HPDE6-C7 were purchased from Chinese Academy of Sciences (Shanghai, China). All cell lines were cultured in 37 °C in a 5% CO2 humidified in DMEM or RPMI 1640 (Invitrogen, Carlsbad, CA) with 10% fetal bovine serum (BI, Carlsbad, CA), 100 U/ml penicillin, and 100 μg/ml streptomycin (Sigma-Aldrich, St. Louis, MO, USA).
Vector construction
Expression vectors encoding linc00462, TGFBR1 (NM_004612.3) and TGFBR2 (NM_001024847.2) were constructed by cloning the open reading frames into the pcDNA3 (Ambion, Austin, TX, USA) vector. For miR-665 expression vector (pri-miR-665), 400 bp containing miR-665 encoded region was amplified from genomic DNA and cloned into the pcDNA3 vector. The 2′-O-methyl-modified miR-665 antisense oligonucleotide (ASO-miR-665) was commercially synthesized as an inhibitor of miR-665. The shR-linc00462, shR-TGFBR1 and shR-TGFBR2 plasmids expressing siRNA were constructed by annealing double-strand hairpin cDNA and inserting it into the pSilencer 2.1-U6 neo vector (Ambion, Austin, TX, USA). All primers for PCR amplification are provided in Supplement Table 2.
Table 2.
RT-qPCR primers | Sequences (5′-3′) |
---|---|
Linc00462-qPCR-forward | ACTAGGTCCTTCTGGTGTT |
Linc00462-qPCR-reverse | GTAAAACTTGCTGCTGATG |
U6-RT | GTCGTATCCAGTGCAGGGTCCGA |
GGTGCACTGGATACGACAAAATATGG | |
U6-qPCR-forward | TGCGGGTGCTCGCTTCGGCAGC |
Reverse-miRNAs | CCAGTGCAGGGTCCGAGGT |
β-actin-qPCR-forward | CGTGACATTAAGGAGAAGCTG |
β-actin-qPCR-reverse | CTAGAAGCATTTGCGGTGGAC |
Oligo dT | TTTTTTTTTTTTTTTTTT |
miR-665-RT | GTCGTATCCAGTGCAGGGTCCG |
AGGTGCACTGGATACGACAGGGGC | |
miR-665-qPCR-forward | TGCGGACCAGGAGGCTGAG |
TGFBR2-qPCR-forward | TCTGGGCTCCTGATTGCT |
TGFBR2-qPCR-reverse | TGAGGCAGCTTTGTAAGT |
TGFBR1-qPCR-forward | AAAACATTATCGCAACTCAG |
TGFBR1-qPCR-reverse | CACAGAAAGGACCCACAT |
COI-I-qPCR-forward | GGCAACAGCCGCTTCACCT |
COI-I-qPCR-reverse | AGGGAGCCAGGTTGGGATG |
COI-III-qPCR-forward | CCCTGTCTGCTTCCTGTA |
COI-III-qPCR-reverse | GCAACCATCCTCCAGAAC |
FN-qPCR-forward | TGAACCCAGTCCCGAAGG |
FN-qPCR-reverse | AACTCCCAGGGTGATGCT |
Plasmids primers | |
linc00462-S | CGGGGTACCCCCAGTCTCGGATAAGTC |
linc00462-AS | CCGCTCGAGGTCCTCGAACATTCCACT |
miR-665-S | CGCGGATCCCTTTGTGCCCAGGGTGGA |
miR-665-AS | GAATTCAGACAGAGGTCCAAGAACCAG |
TGFBR1-S | CCCAAGCTTGAATCCATGGAGGCGGCGGTCGCTGCT |
TGFBR1-AS | CTCGAGTTACATTTTGATGCCTTCCTGTTGA |
TGFBR2-S | CCCAAGCTTGAATCCATGGGTCGGGGGCTGCTCAGG |
TGFBR2-AS | CTCGAGTTA CTATTTGGTAGTGTTTAGGGAGCCG |
ASO-NC | CAGUACUGUAGUGUAGUACTT |
ASO-miR-665 | AGGGGCCUCAGCCUCCUGGU |
shR-linc00462-S | CCGGAAGCACAGTGGTCTAAAAGTA |
CTCGAGTACTTTTAGACCACTGTGCTTTTTTTG | |
shR-linc00462-AS | CAAAAAAAGCACAGTGGTCTAAAAGT |
ACTCGAGTACTTTTAGACCACTGTGCTTCCGG | |
shR-TGFBR1-S | GATCCGGGCTGACAGCTTTGCGAATTAA |
CTCGAGTTAATTCGCAAAGCTGTCAGCTTTTTA | |
shR-TGFBR1-AS | AGCTTCAAAAAGGGCTGACAGCTTTGCGAATT |
AACTCGAGTTAATTCGCAAAGCTGTCAGCG | |
shR-TGFBR2-S | GATCCGGGACCTCAAGAGCTCCAATAT |
CCTCGAGGATATTGGAGCTCTTGAGGTCTTTTTGA | |
shR-TGFBR2-AS | AGCTTCAAAAAGGGACCTCAAGAGCTCCA |
ATATCCTCGAGGATATTGGAGCTCTTGAGGTCG |
Quantitative real time PCR analyses
The total RNA was extracted from the tissues or cultured cells using Trizol reagent (Invitrogen, Carlsbad, CA, USA), according to the manufacturer’s instructions. The quality and integrity of acquired RNA was evaluated by Nanodrop2000c and gel electrophoresis, respectively. RT-qPCR was performed with Prime Script reagent RT Kit and SYBR Prime Script RT-PCR Kits (Takara, Dalian, China) based on the manufacturer’s instructions. All real-time PCR reactions were performed using a 7500 Fast Real Time PCR System (Applied Biosystems). The target gene expression level was calculated with the 2−ΔΔCt method, which was normalized to β-catin mRNA. The relative fold changes were calculated using the 2-ΔΔCt method with their corresponding inner control genes. The primers used in this study were shown in Table 2.
CCK-8 assay
PC cells were seeded at a density of 6000 cells per well in 96-well plates. The PANC-1 and CFPAC-1 cells were transfected with the indicated plasmids. Cell viability at 0, 24, 48, and 72 h post-transfection was determined by Cell Counting Kit-8 (CCK-8; KeyGen Biotech) according to the manufacturer’s protocol. The absorbance values at 450 nm were measured via the Quant Microplate Spectrophotometer (BioTek, Winooski, VT).
Colony formation assay
For the colony formation assay, cells were seeded at a low density (500 cells per plate) and allowed to grow until visible colonies appeared. Culture medium was replaced every 72 h. The cells were then stained with common crystal violet dye, and colonies containing more than 50 cells were counted.
Prediction of linc00462 and miR-665 targets
The correlation of linc00462 and miRNAs was predicted by RegRNA 2.0. The hypothetical targets of miR-665 were predicted using Targetscan 7.1, RNAhybrid, and microRNA.org.
EGFP reporter assay
The 3′UTRs of TGFBR1 and TGFBR2 that contain the miR-665 binding sites and mutant 3′UTR fragments with mutant miR-665 binding sites were obtained by annealing double-strand DNA and inserting it into the pcDNA3/EGFP (Tianjin Saierbio, Tianjin, China) vector. All primers for PCR amplification are provided in Table 2. The EGFP reporter plasmids with TGFBR1 and TGFBR2 3′UTR or 3′UTR-mut were transfected into PANC-1 and CFPAC-1 cells with LipofectamineTM 2000 reagent (Invitrogen, Carlsbad, CA), and RFP expressing plasmid was integrated as a transfection efficiency control. Cells were lysed 48 h post-transfection, and the intensities of EGFP and RFP fluorescence were determined with a spectrophotometer.
Cell-matrix adhesion assay
96-well plates were coated overnight with 10 mg/ml fibronectin (Solarbio, Shanghai, China) at 4 °C. Cells were seeded on the 96-well plates at a density of 5 × 103/well, allowed to adhere at 37 °C for at 10, 30, 60 min, and were then washed three times with 1 × PBS. The cells were fixed with 4% (v/v) paraformaldehyde, stained with 0.5% (w/v) crystal violet for 10 min, and then lysed with 30% (v/v) glacial acetic acid for 10 min; absorbance at 620 nm was then measured.
Western blot assay
Cell extracts were cleaned with 1× PBS buffer, prepared with RIPA lysis buffer, and analyzed by immunoblotting. Antibodies of cleaved caspase 3, cleaved PARP, BCL2, BAX, E-cadherin, ICAM-1, Vimentin, Twist 1, MMP2, MMP9, GAPDH, SMAD2, SMAD3, p-SMAD2, p-SMAD3, TGFBR1, and TGFBR2 were purchased from CST (Cell Signaling Technology, Danvers, MA, USA) and the secondary goat anti-rabbit antibody was obtained from Santa (Cruz Biotechnology, Dallas, TX, USA). LabWorksTM Image Acquisition and Analysis Software (UVP, Upland, CA) were used to quantify band intensities.
Cell cycle and apoptosis flow cytometry analyses
At 48 h after transfection, transfected PC cells were harvested by trypsinization and resuspended in cold phosphate-buffered saline for analysis. For the analysis of cell cycle, cells stained with PI according to the manufacturer’s manual. The rate of cell apoptosis was detected using an Annexin V-FITC/PI apoptosis detection kit (BD Biosciences, San Jose, CA, USA) according to the manufacturer’s instructions.
Cell invasion assay
The Boyden chambers with 8 μm pores (Corning, NY, USA) were used to evaluate cell motility. The transwell membrane (filter) was pre-coated with 30 μl of matrigel: PBS (1:3) and incubated for 48 h. The transfected 1 × 104 cells were resuspended in 100 μl serum-free medium and then transferred to the upper chambers. Approximately 600 μl medium with 10% serum was added to the lower chamber. After incubation for 24 h, the transwell membrane was fixed with methanol, stained with crystal violet, and then counted under a light microscope.
Immunofluorescence
Cells seeded on glass coverslips in 24-well plates were fixed in 4% formaldehyde solution and permeabilized with 0.05% Triton X-100. Cells were blocked with 10% bovine serum albumin for 15 min and incubated with primary antibody (p-SMAD2/3, Cell Signaling, Beverly, MA.) at room temperature for 4 h, followed by incubation with FITC-conjugated secondary antibodies (FITC, Invitrogen, Carlsbad, CA) for 45 min, and then stained with DAPI. Finally, images were taken under a confocal microscope (OLYMPUS, Tokyo, Japan).
In vivo experiments
BALB/c nude mice, were purchased from the Shanghai Experimental Animal Center-Chinese Academy of Sciences (Shanghai, China), were randomly assigned to 2 groups (n = 6), 2 × 107 cells (PANC-1-pcDNA3 or PANC-1-linc00462) resuspended in 25 µl of DMEM and mixed with 25 µl of Matrigel (1 mg/ml) were injected into the tail vein of mice. After 6–8 weeks, the mice were euthanized, and the spleen, colorectum, lung and liver were removed for pathological examination and stained with H&E. In heterograft experiment, lentivirus (1 × 107) transduced PANC-1 cells were subcutaneously injected into the right armpit of BALB/c nude mice. The weight of the mice and the diameters of tumors were measured.
Statistical analysis
All analyses were performed using SPSS 19 for Windows (SPSS Inc., Chicago, IL, USA) and GraphPad Prism 5 for Windows (GraphPad Software Inc., San Diego, CA, USA). For comparisons of two treatment groups, the Student t-test was used. For comparisons of three or more groups, one-way ANOVA was used with the Bonferroni post-hoc test for comparison of two selected treatment groups; the Dunnett post-hoc test was used for comparisons of the other treatment groups with the corresponding controls. Data are presented as means ± standard deviation (SD) or medians with ranges. Statistical analyses were performed using Student’s t-tests. A p-value less than 0.05 are considered significant. *p < 0.05; **p < 0.01, ***p < 0.001.
Acknowledgements
This work was partially supported by the National Natural Science Foundation of China (No: 81102543, 81302077) and the Natural Science Foundation of Tianjin (17JCYBJC26500).
Author contributions
F.H. conceived the project and supervised the experiments. B.Z. performed the experiments. W.D.G. and C.D.S did array and some experiments. B.Y.Z did bioinformatics analysis. B.Z. and F.H. wrote the manuscript with help from all of the authors. All authors reviewed the manuscript.
Conflict of interest
The authors declare that they have no conflict of interest.
Footnotes
Edited by A. Rufini
Publisher's note: Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
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