By in situ oxidation (S—S)2− and (Se—Se)2− moieties are formed, replacing nBu3Sn substituents on alkene carbon atoms of two distinct and subsequently linked 1,3-ene-dithiol-2-one units. The resulting compounds, bis[4-methyl-1,3-dithiol-2-one] disulfide, C8H6O2S4S2, and bis[4-methyl-1,3-dithiol-2-one] diselenide, C8H6O2Se6, are isotypic.
Keywords: crystal structure; catenation; 1,3-ene-dithiol-2-ones; disulfide; diselenide
Abstract
The two title compounds, C8H6O2S6 and C8H6O2S4Se2, are isotypic with very similar cell parameters. The complete molecules constitute the asymmetric units, despite being chemically perfectly symmetric. The most prominant differences in the metrical parameters arise from the distinct sizes of sulfur and selenium in the dichalcogenide bridges, with C—S—S—C and C—Se—Se—C torsion angles of 70.70 (5) and 68.88 (3)°, respectively. The crystal packing is determined by weak non-classical hydrogen-bonding interactions. One carbonyl oxygen but not the other participates in C—H⋯O interactions zigzagging along the b axis, forming infinite chains. This is complemented by an intramolecular C—H⋯S interaction and further intermolecular C—H⋯S (C—H⋯Se) interactions, resulting in a three-dimensional network. The interactions involving the bridging chalcogenides form chains protruding along the c axis.
Chemical context
Selenium- and sulfur-containing compounds play an important role in nature. Sulfur-rich compounds, in particular derivatives of tetrathiafulvalene and dithiolene, comprise chemically interesting compounds with exceptional electronic structural characteristics. Selenium is an essential trace element in the active sites of several enzymes and plays inter alia an important role in antioxidant selenoproteins for protection against oxidative stress such as in thioredoxin reductase (Lee et al., 1999 ▸; Lescure et al., 1999 ▸; Mustacich & Powis, 2000 ▸; Watabe et al., 1999 ▸; Williams et al., 2000 ▸). In the disulfide isomerase protein family, thioredoxin-like domains are rich in cysteine residues. A diselenide from selenocysteins was shown to be structurally very similar to the respective disulfide from two cysteins (Görbitz et al., 2015 ▸). As a consequence, disulfide and diselenide compounds were developed as catalysts for oxidative protein folding and refolding reactions (Arai et al., 2018 ▸). Here we report the serendipitous synthesis and structural characterization of bis[3-methyl-1,3-ene-dithiol-2-one] disulfide and bis[3-methyl-1,3-ene-dithiol-2-one] diselenide via unprecedented routes. Instead of the targeted products, the applied order of reactions yielded the novel disulfide and its diselenide analogue, which have potential applications in redox chemistry and as biologically interesting compounds. By in situ oxidation, S—S or Se—Se moieties are formed, replacing the nBu3Sn substituents of alkene carbon atoms of two distinct and consequently linked 1,3-ene-dithiol-2-one units. As this constitutes a substitution of a nBu3Sn functional group, it is quite likely that this method can be applied to a variety of respective different precursors.
Structural commentary
The two title compounds are isotypic. One complete molecule constitutes the asymmetric unit despite being chemically perfectly symmetric: i.e. no symmetry operation is used to generate the whole molecular structure. In both compounds, two 3-methyl-1,3-ene-dithiol-2-one moieties are linked by a dichalcogenide bridge (S2 2− or Se2 2−), which is attached to one of the ene carbon atoms, while the other ene carbon is bound to a methyl group (Figs. 1 ▸ and 2 ▸). Both structures constitute the first examples of crystallographically characterized disulfides and diselenides in which two 1,3-ene-dithiol-2-one moieties are linked by a dichalcogenide bridge. While related bridged 1,3-ene-dithiol-2-thione moieties are reported for disulfides and also one compound in which the disulfide is part of a heterocycle with the 1,3-ene-dithiol-2-one moiety (Chou et al., 1998 ▸), no such analogues are known in the case of the diselenide bridge.
Figure 1.
The molecular structure of bis[4-methyl-1,3-ene-dithiol-2-one] disulfide. Displacement ellipsoids are shown at the 50% probability level.
Figure 2.
The molecular structure of [bis[4-methyl-1,3-ene-dithiol-2-one] diselenide. Displacement ellipsoids are shown at the 50% probability level.
The metrical parameters of both molecules are nearly identical (see Fig. 3 ▸ for an overlay of the molecules), with the largest differences found for the dichalcogenide bridge itself. The Se—Se distance [2.3397 (7) Å] is longer by ca 0.27 Å than the S—S distance [2.0723 (7) Å], matching almost exactly the difference in the respective covalent radii (0.13 Å; Pyykkö & Atsumi, 2009 ▸) multiplied by two. Similarly, the average C—Se distance [1.897 (4) Å] is longer by 0.15 Å than the average C—S distance [1.749 (2) Å]. Unusual electronic effects upon exchanging selenium for sulfur can, hence, be excluded. The average C—Se—Se angle [98.8 (6)°] is slightly more acute than the C—S—S angle [101.8 (6)°], which necessarily results from the longer distances involving the Se atom and the nearly identical atom positions of the 1,3-ene-dithiol-2-thione moieties. All other differences in the metrical parameters between the two molecular structures are marginal. All observed distances and angles also fall into or close to the expected/previously reported ranges. The S—S distances of the most closely related compounds range from 2.078 Å in an Fe(CO)2Cp-coordinating species (Matsubayashi et al., 2002 ▸) to 2.160 Å in the [C6S10]2− dianion crystallized as an ammonium salt (Breitzer et al., 2001 ▸). The observed S—S distance [S3—S4; 2.0723 (7) Å] here is slightly shorter than the former, though not shorter than the lower limit of ca 2.00 Å when generally evaluating C—S—S—C linkages (Comerlato et al., 2010 ▸; Aida & Nagata, 1986 ▸). Se—Se distances in compounds in which one Se2 2− unit binds to alkene carbon atoms and bridges two identical ene-moieties range from 2.303 Å (Biswas et al., 2017 ▸) to 2.389 Å (Ruban et al., 1981 ▸), with the Se—Se distance observed here [2.3397 (7) Å] falling right in the center of this range.
Figure 3.
An overlay (Mercury; Macrae et al., 2006 ▸) of the molecular structures of bis[4-methyl-1,3-ene-dithiol-2-one] disulfide (yellow bridge) and bis[4-methyl-1,3-ene-dithiol-2-one] diselenide (orange bridge). The root-mean-square deviation (r.m.s.d.) and the maximum distance between atom positions are 0.078 and 0.171 Å, respectively.
The structurally most notable features are the C—S—S—C and C—Se—Se—C torsion angles [70.70 (5) and 68.86 (3)°, respectively] which bring the two 1,3-ene-dithiol-2-thione moieties in rather close proximity. In related disulfides they range from 52.08 to 109.82° (Breitzer et al., 2001 ▸). C—S—S—C torsion angles near 90° were found in silico to stabilize structures by an overlap of one σ*S—C orbital with the 3p lone pair of the other sulfur atom, which is maximized in such an arrangement (Aida & Nagata, 1986 ▸). The observed C—Se—Se—C torsion angles of diselenide-bridged alkenes as the closest relatives of the title diselenide range from 73.03° (Ruban et al., 1981 ▸) to 92.04° (Biswas et al., 2017 ▸). In the crystalline solid state, apparently packing effects, steric bulk, hydrogen-bonding interactions, and π–π-stacking can influence the relative orientations of the two substituents on the disulfide unit significantly, whereas the values for alkene bridging diselenides observed to date are less varied.
The four 1,3-ene-dithiol-2-one moieties (two in each structure) are essentially planar, with maximum deviations from the least-squares plane of 0.028 and 0.022 Å for the disulfide and for the diselenide, respectively, corresponding to the distances from atom S1 to the O1—S1—S2—C1—C2—C3 plane in both cases. The dihedral angles between the O1—S1—S2—C1—C2—C3 and the O2—S5—S6—C6—C7—C8 planes are 33.8 (2)° for the disulfide and 28.89 (11)° for the diselenide. Here, a smaller torsion angle around the dichalcogenide bridge is accompanied by a smaller angle between the two planes of the 1,3-ene-dithiol-2-one moieties.
Supramolecular features
In the crystals, molecules are linked by C—H⋯O, C—H⋯S, and C—H⋯Se non-classical hydrogen-bonding interactions, some of which being comparably weak (Tables 1 ▸ and 2 ▸). One carbonyl oxygen but not the other participates in C4—H4B⋯O1i interactions zigzagging along the b axis, forming infinite chains (Fig. 4 ▸, left). The respective D⋯A distances are 3.345 (2) Å for the disufide and 3.369 (5) Å for the diselenide. This is complemented by two intramolecular interactions between the two chalcogens of the dichalcogenide bridges and the adjacent methyl substituents (C4—H4A⋯S3/Se1 and C5—H5A⋯S4/Se2) with D⋯A distances of 3.244 (2) for S3, of 3.234 (2) for S4, of 3.354 (4) for Se1, and of 3.341 (4) for Se2. Further intermolecular C—H⋯S and C—H⋯Se interactions contribute to the formation of a three-dimensional network. The interactions involving the bridging chalcogenides form chains protruding along the c axis (Fig. 4 ▸, center and right). The closest 3-methyl-1,3-ene-dithiol-2-one moieties of two adjacent molecules are perfectly coplanar with the carbonyl oxygen atoms pointing into opposite directions. The respective distances between the planes are 3.55 and 3.58 Å for pairs of S1—S2—C1—C2—C3 heterocycles for the disulfide and diselenide, and 3.64 and 3.66 Å for pairs of S5—S6—C6—C7—C8 heterocycles. This arrangement fosters weak symmetric bidirectional C5—H5C⋯S5iii and C4—H4C⋯S2iv hydrogen-bonding interactions between methyl hydrogen atoms and S2 and S5 ring atoms, connecting adjacent chains and forming a three-dimensional network (Fig. 4 ▸, right).
Table 1. Hydrogen-bond geometry (Å, °) for C8H6O2S6 .
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
C4—H4A⋯S3 | 0.98 | 2.76 | 3.244 (2) | 111 |
C5—H5A⋯S4 | 0.98 | 2.75 | 3.234 (2) | 111 |
C4—H4B⋯O1i | 0.98 | 2.53 | 3.345 (2) | 141 |
C5—H5C⋯S3ii | 0.98 | 3.14 | 3.8063 (19) | 126 |
C5—H5C⋯S5iii | 0.98 | 3.01 | 3.825 (2) | 142 |
C4—H4C⋯S2iv | 0.98 | 3.12 | 4.021 (2) | 153 |
Symmetry codes: (i) ; (ii)
; (iii)
; (iv)
.
Table 2. Hydrogen-bond geometry (Å, °) for C8H6O2S4Se2 .
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
---|---|---|---|---|
C4—H4A⋯Se1 | 0.98 | 2.84 | 3.354 (4) | 114 |
C5—H5A⋯Se2 | 0.98 | 2.83 | 3.341 (4) | 114 |
C4—H4B⋯O1i | 0.98 | 2.55 | 3.369 (5) | 141 |
C5—H5C⋯Se1ii | 0.98 | 3.14 | 3.801 (4) | 126 |
C5—H5C⋯S5iii | 0.98 | 3.04 | 3.850 (4) | 141 |
C4—H4C⋯S2iv | 0.98 | 3.13 | 3.992 (4) | 148 |
Symmetry codes: (i) ; (ii)
; (iii)
; (iv)
.
Figure 4.
Packing and non-classical hydrogen-bonding motifs for the crystal structures of bis[4-methyl-1,3-ene-dithiol-2-one] disulfide and bis[4-methyl-1,3-ene-dithiol-2-one] diselenide. Left: C4—H4B⋯O1i interactions zigzagging along the b axis shown for the diselenide; center: hydrogen-bonding interactions of the diselenide bridge C5—H5C⋯Se1ii protruding along the c axis; right: additional symmetric hydrogen-bonding interactions between coplanar 1,3-ene-dithiol-2-one moieties connecting adjacent chains shown for the disulfide (C4—H4C⋯S2iv and C5—H5C⋯S5iii). For symmetry codes, see Tables 1 ▸ and 2 ▸.
Database survey
In the literature to date, only S—S-bridged 1,3-ene-dithiol-2-thione compounds have been reported but no analogous 1,3-ene-dithiol-2-one compounds (excluding those in which the ‘link’ is part of a heterocycle). The first such thione crystal structure was reported in 1999 by Cerrada et al., which comprises an S—S-linked [C3S5—C3S5]2− dianion (Cerrada et al., 1999 ▸). Ten years later, Cerrada et al. described the S—S coupling via dithiolate transfer from tin to nickel complexes where they isolated an S—S-bridged 1,3-dithiol-2-thione with different substituents as a crystalline byproduct (Cerrada et al., 2009 ▸). Rauchfuss and co-workers described the isolation and structural characterization of an S—S-linked dianion [C6S10]2− as the tetramethylammonium salt (Breitzer et al., 2001 ▸). In 2002, Matsubayashi et al. reported the formation of an S—S-linked [C3S5—C3S5]2− system bridging two Fe(CO)2Cp complexes by coordination of thiolate sulfur to iron (Matsubayashi et al., 2002 ▸). Wardell and coworkers carried out the controlled oxidation of cesium 4-benzoylthio-1,3-dithiole-2-thione-5-thiolate using iodine as oxidant and obtained bis(4-benzoylthio-1,3-dithiole-2-thione)-5,5-disulfide, in two polymorphic forms (Comerlato et al., 2010 ▸). Recently the formation of a disulfide with a 4-(methylsulfanyl)-2H-1,3-dithiole-2-thione unit was reported from the reaction of a Cs complex with MCl2 (M = Pt, Pd) by Kumar et al. (2017 ▸). Notably, such compounds predominantly constitute unanticipated side products and the focus of the respective characterization lies in crystallographic analyses with respect to solid-state intermolecular interactions and packing motifs. More in-depth studies have focused predominatly on their interesting redox properties (Breitzer et al., 2001 ▸; Matsubayashi et al., 2002 ▸).
Only two analogous diselenide compounds with Se—Se moieties linking two 1,3-ene-dithiol-2-thione moieties are reported in the literature, albeit without crystallographic data (Cerrada et al., 1999 ▸; Takimiya et al., 2002 ▸). To date, no such compounds are known with 1,3-ene-dithiol-2-one moieties. A few examples are available for distantly related compounds in which cyclic alkenes are bridged by a diselenide moiety. Already in 1981, the synthesis, characterization and crystal structure of such a diselenide was described by Ruban et al.: bis{4-(2-thienyl)selenolo[3,4-b]thiophen-6-yl}diselenide was formed unexpectedly by the reaction of 2-[(triphenylphosphonio)methyl] thiophene chloride with sodium hydrogen selenite (Ruban et al., 1981 ▸). In 2000, Oilunkaniemi et al. published a procedure for the synthesis of thienyl- and furyl diselenide compounds, which was confirmed by respective crystal structures and selenium NMR spectra (Oilunkaniemi et al., 2000 ▸). Kumar & Nangia (2000 ▸) published the crystal structure of 2,2‘-diselenobis(4,4-diphenylcyclo-hexa-2,5-dienone). In 2003, Thaler et al. synthesized cyclopentadienyl selenium compounds as multifunctional ligand systems with a varied number of selenium atoms in the Sen bridge (Thaler et al., 2003 ▸). Recently, the formation of a diselenide as a byproduct during the synthesis of heliannuol C (as confirmed by X-ray diffraction) was described by Biswas et al. (2017 ▸). The crystal structures of bis[4-methyl-1,3-dithiol-2-one] disulfide and diselenide described in the current work are the first in which two 1,3-ene-dithiol-2-one moieties are linked by an S—S and an Se—Se bridge, respectively. For the latter, even the chemical structure is entirely unprecedented.
Synthesis and crystallization
Preparation of bis[4-methyl-1,3-dithiol-2-one] disulfide: This was undertaken by a modification of a published procedure (Dinsmore et al., 1998 ▸). 4-Methyl-1,3-dithiol-2-one (0.95 g, 7.2 mmol) and tributyltin chloride (2.92 ml, 8.63 mmol) in dry THF (10 ml) under nitrogen were cooled to 169 K (N2/MeOH:Et2O or dry ice/Et2O), and LDA (9.8 ml, 7.9 mmol, 10% solution in hexane) was added dropwise over 5 min. The mixture was allowed to stand for 35 min, warmed to ice-bath temperature and after a further 10 minutes quenched with a saturated aqueous solution of NH4Cl (around 20 ml). The organic phase was diluted with EtOAc, separated and the aqueous phase re-extracted with Et2O (2 × 15 ml). The combined organic phases were washed with brine, dried and the solvent evaporated in vacuo to give a yellowish oil as crude product. This was purified by chromatography (silica gel), eluting with EtOAc/petroleum ether (40/60) 3:97 v/v to give 4-methyl-5-tri-n-butylstannyl-1,3-dithiol-2-one as the major product. During purification, a yellowish oily fraction was isolated and subsequently stored at 253 K, forming large yellow crystals. Crystallographic evaluation of these crystals reveals the formation of the side product bis[4-methyl-1,3-dithiol-2-one] disulfide.
Preparation of bis[4-methyl-1,3-dithiol-2-one] diselenide: The synthesis was carried out under an inert gas atmosphere of nitrogen, whereas the purification steps were carried out in air. To a solution of 4-methyl-5-tri-n-butylstannyl-1,3-dithiol-2-one (352.5 mg, 0.84 mmol) in freshly distilled dioxane (5 ml) was added freshly sublimed selenium dioxide (134.2 mg, 1.21 mmol). The reaction mixture was heated at reflux temperature for 6 h. After cooling, the solution was filtered through celite. Solvent removal gave an orange solid (188.0 mg, 0.38 mmol, 45%). Yellow crystals suitable for crystallographic analysis were obtained by recrystallization from acetone.
Refinement
Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. The six methyl hydrogen atoms of each structure were included in calculated positions and treated as riding with C—H = 0.98 Å and Ui so(H) = 1.5U eq(C).
Table 3. Experimental details.
C8H6O2S6 | C8H6O2S4Se2 | |
---|---|---|
Crystal data | ||
M r | 326.49 | 420.29 |
Crystal system, space group | Monoclinic, P21/c | Monoclinic, P21/c |
Temperature (K) | 170 | 170 |
a, b, c (Å) | 10.845 (2), 9.0387 (18), 13.370 (3) | 10.960 (2), 9.1348 (18), 13.495 (3) |
β (°) | 108.95 (3) | 108.29 (3) |
V (Å3) | 1239.6 (4) | 1282.8 (5) |
Z | 4 | 4 |
Radiation type | Mo Kα | Mo Kα |
μ (mm−1) | 1.08 | 6.40 |
Crystal size (mm) | 0.50 × 0.20 × 0.001 | 0.48 × 0.43 × 0.41 |
Data collection | ||
Diffractometer | STOE IPDS2T | Stoe IPDS2T |
Absorption correction | Numerical face indexed | Numerical face indexed |
T min, T max | 0.771, 0.942 | 0.393, 0.786 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13324, 3344, 2636 | 10805, 2733, 2009 |
R int | 0.034 | 0.063 |
(sin θ/λ)max (Å−1) | 0.687 | 0.636 |
Refinement | ||
R[F 2 > 2σ(F 2)], wR(F 2), S | 0.027, 0.064, 1.03 | 0.029, 0.058, 0.97 |
No. of reflections | 3344 | 2733 |
No. of parameters | 147 | 147 |
H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.36, −0.34 | 0.41, −0.51 |
Supplementary Material
Crystal structure: contains datablock(s) CSV72a12, it14ii. DOI: 10.1107/S2056989018007454/wm5446sup1.cif
Structure factors: contains datablock(s) CSV72a12. DOI: 10.1107/S2056989018007454/wm5446CSV72a12sup2.hkl
Structure factors: contains datablock(s) it14ii. DOI: 10.1107/S2056989018007454/wm5446it14iisup3.hkl
Additional supporting information: crystallographic information; 3D view; checkCIF report
supplementary crystallographic information
4,4'-(Disulfane-1,2-diyl)bis(5-methyl-2H-1,3-dithiol-2-one) (CSV72a12) . Crystal data
C8H6O2S4Se2 | F(000) = 808 |
Mr = 420.29 | Dx = 2.176 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
a = 10.960 (2) Å | Cell parameters from 11124 reflections |
b = 9.1348 (18) Å | θ = 3.2–53.8° |
c = 13.495 (3) Å | µ = 6.40 mm−1 |
β = 108.29 (3)° | T = 170 K |
V = 1282.8 (5) Å3 | Block, yellow |
Z = 4 | 0.48 × 0.43 × 0.41 mm |
4,4'-(Disulfane-1,2-diyl)bis(5-methyl-2H-1,3-dithiol-2-one) (CSV72a12) . Data collection
Stoe IPDS2T diffractometer | 2733 independent reflections |
Radiation source: fine-focus sealed tube | 2009 reflections with I > 2σ(I) |
Detector resolution: 6.67 pixels mm-1 | Rint = 0.063 |
ω scans | θmax = 26.9°, θmin = 2.0° |
Absorption correction: numerical face indexed | h = −13→13 |
Tmin = 0.393, Tmax = 0.786 | k = −11→11 |
10805 measured reflections | l = −17→17 |
4,4'-(Disulfane-1,2-diyl)bis(5-methyl-2H-1,3-dithiol-2-one) (CSV72a12) . Refinement
Refinement on F2 | 0 restraints |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.029 | H-atom parameters constrained |
wR(F2) = 0.058 | w = 1/[σ2(Fo2) + (0.0249P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.97 | (Δ/σ)max = 0.001 |
2733 reflections | Δρmax = 0.41 e Å−3 |
147 parameters | Δρmin = −0.51 e Å−3 |
4,4'-(Disulfane-1,2-diyl)bis(5-methyl-2H-1,3-dithiol-2-one) (CSV72a12) . Special details
Experimental. (X-RED32 and X-SHAPE; Stoe, 2010) |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
4,4'-(Disulfane-1,2-diyl)bis(5-methyl-2H-1,3-dithiol-2-one) (CSV72a12) . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
C1 | 0.5603 (4) | 0.9723 (4) | 0.2588 (3) | 0.0330 (8) | |
C2 | 0.6767 (3) | 0.9491 (4) | 0.4583 (3) | 0.0283 (7) | |
C3 | 0.5772 (3) | 0.8578 (4) | 0.4418 (3) | 0.0292 (7) | |
C4 | 0.5451 (4) | 0.7610 (4) | 0.5199 (3) | 0.0407 (9) | |
H4A | 0.610175 | 0.773264 | 0.588334 | 0.061* | |
H4B | 0.543631 | 0.658702 | 0.497773 | 0.061* | |
H4C | 0.460552 | 0.787918 | 0.524643 | 0.061* | |
C5 | 0.8143 (4) | 0.6153 (5) | 0.3661 (3) | 0.0430 (10) | |
H5A | 0.857954 | 0.708541 | 0.364796 | 0.064* | |
H5B | 0.722081 | 0.626480 | 0.330068 | 0.064* | |
H5C | 0.849415 | 0.539960 | 0.331030 | 0.064* | |
C6 | 0.8349 (3) | 0.5707 (4) | 0.4771 (3) | 0.0300 (7) | |
C7 | 0.8914 (3) | 0.6483 (4) | 0.5642 (3) | 0.0288 (7) | |
C8 | 0.8162 (4) | 0.4074 (4) | 0.6323 (3) | 0.0333 (8) | |
O1 | 0.5276 (3) | 1.0021 (3) | 0.16730 (19) | 0.0441 (7) | |
O2 | 0.7920 (3) | 0.3109 (3) | 0.6837 (2) | 0.0445 (7) | |
S1 | 0.47447 (9) | 0.85051 (10) | 0.31380 (8) | 0.0387 (2) | |
S2 | 0.69642 (9) | 1.04502 (9) | 0.35303 (6) | 0.02911 (19) | |
S5 | 0.89572 (10) | 0.57233 (10) | 0.68357 (7) | 0.0345 (2) | |
S6 | 0.77748 (10) | 0.39942 (10) | 0.49537 (7) | 0.0368 (2) | |
Se1 | 0.80328 (4) | 0.98085 (4) | 0.58945 (3) | 0.03435 (11) | |
Se2 | 0.96657 (4) | 0.83504 (4) | 0.56427 (3) | 0.03646 (11) |
4,4'-(Disulfane-1,2-diyl)bis(5-methyl-2H-1,3-dithiol-2-one) (CSV72a12) . Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.039 (2) | 0.0238 (17) | 0.0322 (19) | 0.0044 (15) | 0.0063 (16) | −0.0015 (14) |
C2 | 0.0338 (19) | 0.0256 (16) | 0.0271 (17) | 0.0018 (14) | 0.0116 (15) | −0.0010 (13) |
C3 | 0.0321 (19) | 0.0247 (17) | 0.0331 (18) | 0.0017 (14) | 0.0135 (16) | −0.0005 (13) |
C4 | 0.045 (2) | 0.036 (2) | 0.048 (2) | −0.0067 (17) | 0.026 (2) | 0.0043 (17) |
C5 | 0.050 (3) | 0.049 (2) | 0.032 (2) | 0.0010 (19) | 0.0172 (19) | −0.0009 (16) |
C6 | 0.0266 (18) | 0.0348 (18) | 0.0300 (18) | 0.0022 (15) | 0.0108 (15) | −0.0002 (14) |
C7 | 0.0258 (18) | 0.0295 (17) | 0.0308 (18) | 0.0004 (14) | 0.0085 (15) | 0.0014 (14) |
C8 | 0.037 (2) | 0.0308 (18) | 0.0375 (19) | 0.0024 (16) | 0.0188 (17) | −0.0044 (16) |
O1 | 0.0597 (18) | 0.0337 (14) | 0.0289 (13) | −0.0022 (13) | −0.0007 (13) | −0.0016 (11) |
O2 | 0.0629 (19) | 0.0320 (14) | 0.0475 (15) | −0.0064 (13) | 0.0303 (15) | −0.0005 (12) |
S1 | 0.0328 (5) | 0.0319 (5) | 0.0450 (5) | −0.0072 (4) | 0.0030 (4) | 0.0015 (4) |
S2 | 0.0334 (5) | 0.0295 (4) | 0.0240 (4) | −0.0052 (4) | 0.0082 (4) | −0.0003 (3) |
S5 | 0.0448 (6) | 0.0306 (4) | 0.0256 (4) | −0.0044 (4) | 0.0075 (4) | −0.0008 (3) |
S6 | 0.0432 (6) | 0.0337 (5) | 0.0331 (5) | −0.0064 (4) | 0.0116 (4) | −0.0095 (4) |
Se1 | 0.0484 (2) | 0.02951 (19) | 0.02304 (17) | −0.00266 (16) | 0.00823 (15) | −0.00313 (14) |
Se2 | 0.0296 (2) | 0.0350 (2) | 0.0410 (2) | −0.00724 (16) | 0.00564 (16) | 0.00402 (16) |
4,4'-(Disulfane-1,2-diyl)bis(5-methyl-2H-1,3-dithiol-2-one) (CSV72a12) . Geometric parameters (Å, º)
C1—O1 | 1.203 (4) | C5—H5A | 0.9800 |
C1—S2 | 1.759 (4) | C5—H5B | 0.9800 |
C1—S1 | 1.765 (4) | C5—H5C | 0.9800 |
C2—C3 | 1.335 (5) | C6—C7 | 1.346 (5) |
C2—S2 | 1.739 (3) | C6—S6 | 1.733 (4) |
C2—Se1 | 1.898 (4) | C7—S5 | 1.741 (3) |
C3—C4 | 1.499 (5) | C7—Se2 | 1.895 (3) |
C3—S1 | 1.742 (4) | C8—O2 | 1.202 (4) |
C4—H4A | 0.9800 | C8—S6 | 1.763 (4) |
C4—H4B | 0.9800 | C8—S5 | 1.769 (4) |
C4—H4C | 0.9800 | Se1—Se2 | 2.3397 (7) |
C5—C6 | 1.498 (5) | ||
O1—C1—S2 | 124.6 (3) | C6—C5—H5C | 109.5 |
O1—C1—S1 | 123.2 (3) | H5A—C5—H5C | 109.5 |
S2—C1—S1 | 112.15 (19) | H5B—C5—H5C | 109.5 |
C3—C2—S2 | 118.9 (3) | C7—C6—C5 | 127.9 (3) |
C3—C2—Se1 | 124.8 (3) | C7—C6—S6 | 116.0 (3) |
S2—C2—Se1 | 116.29 (19) | C5—C6—S6 | 116.1 (3) |
C2—C3—C4 | 127.6 (3) | C6—C7—S5 | 118.1 (3) |
C2—C3—S1 | 115.4 (3) | C6—C7—Se2 | 123.7 (3) |
C4—C3—S1 | 117.0 (3) | S5—C7—Se2 | 118.23 (18) |
C3—C4—H4A | 109.5 | O2—C8—S6 | 123.4 (3) |
C3—C4—H4B | 109.5 | O2—C8—S5 | 124.7 (3) |
H4A—C4—H4B | 109.5 | S6—C8—S5 | 111.8 (2) |
C3—C4—H4C | 109.5 | C3—S1—C1 | 97.42 (17) |
H4A—C4—H4C | 109.5 | C2—S2—C1 | 96.07 (17) |
H4B—C4—H4C | 109.5 | C7—S5—C8 | 96.36 (17) |
C6—C5—H5A | 109.5 | C6—S6—C8 | 97.68 (17) |
C6—C5—H5B | 109.5 | C7—Se2—Se1 | 99.23 (10) |
H5A—C5—H5B | 109.5 | C2—Se1—Se2 | 98.40 (10) |
4,4'-(Disulfane-1,2-diyl)bis(5-methyl-2H-1,3-dithiol-2-one) (CSV72a12) . Hydrogen-bond geometry (Å, º)
D—H···A | D—H | H···A | D···A | D—H···A |
C4—H4A···Se1 | 0.98 | 2.84 | 3.354 (4) | 114 |
C5—H5A···Se2 | 0.98 | 2.83 | 3.341 (4) | 114 |
C4—H4B···O1i | 0.98 | 2.55 | 3.369 (5) | 141 |
C5—H5C···Se1ii | 0.98 | 3.14 | 3.801 (4) | 126 |
C5—H5C···S5iii | 0.98 | 3.04 | 3.850 (4) | 141 |
C4—H4C···S2iv | 0.98 | 3.13 | 3.992 (4) | 148 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) x, −y+3/2, z−1/2; (iii) −x+2, −y+1, −z+1; (iv) −x+1, −y+2, −z+1.
4,4'-(Diselanane-1,2-diyl)bis(5-methyl-2H-1,3-dithiol-2-one) (it14ii) . Crystal data
C8H6O2S6 | F(000) = 664 |
Mr = 326.49 | Dx = 1.749 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 13753 reflections |
a = 10.845 (2) Å | θ = 6.4–58.5° |
b = 9.0387 (18) Å | µ = 1.08 mm−1 |
c = 13.370 (3) Å | T = 170 K |
β = 108.95 (3)° | Plate, yellow |
V = 1239.6 (4) Å3 | 0.50 × 0.20 × 0.001 mm |
Z = 4 |
4,4'-(Diselanane-1,2-diyl)bis(5-methyl-2H-1,3-dithiol-2-one) (it14ii) . Data collection
STOE IPDS2T diffractometer | 3344 independent reflections |
Radiation source: fine-focus sealed tube | 2636 reflections with I > 2σ(I) |
Detector resolution: 6.67 pixels mm-1 | Rint = 0.034 |
ω scans | θmax = 29.2°, θmin = 3.2° |
Absorption correction: numerical face indexed | h = −14→11 |
Tmin = 0.771, Tmax = 0.942 | k = −12→12 |
13324 measured reflections | l = −18→18 |
4,4'-(Diselanane-1,2-diyl)bis(5-methyl-2H-1,3-dithiol-2-one) (it14ii) . Refinement
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.027 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.064 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.031P)2 + 0.2272P] where P = (Fo2 + 2Fc2)/3 |
3344 reflections | (Δ/σ)max = 0.001 |
147 parameters | Δρmax = 0.36 e Å−3 |
0 restraints | Δρmin = −0.34 e Å−3 |
4,4'-(Diselanane-1,2-diyl)bis(5-methyl-2H-1,3-dithiol-2-one) (it14ii) . Special details
Experimental. (X-RED32 and X-SHAPE; Stoe, 2010) |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
4,4'-(Diselanane-1,2-diyl)bis(5-methyl-2H-1,3-dithiol-2-one) (it14ii) . Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
x | y | z | Uiso*/Ueq | ||
C1 | 0.56140 (18) | 0.97691 (18) | 0.25987 (13) | 0.0303 (3) | |
C2 | 0.68624 (16) | 0.94540 (18) | 0.46161 (11) | 0.0264 (3) | |
C3 | 0.58060 (16) | 0.85986 (19) | 0.44516 (12) | 0.0283 (3) | |
C4 | 0.54816 (19) | 0.7632 (2) | 0.52398 (15) | 0.0377 (4) | |
H4A | 0.616846 | 0.771796 | 0.592700 | 0.057* | |
H4B | 0.541661 | 0.660179 | 0.500052 | 0.057* | |
H4C | 0.464737 | 0.794436 | 0.530838 | 0.057* | |
C5 | 0.8123 (2) | 0.6221 (2) | 0.36279 (14) | 0.0432 (4) | |
H5A | 0.856072 | 0.716664 | 0.361746 | 0.065* | |
H5B | 0.718458 | 0.633249 | 0.326446 | 0.065* | |
H5C | 0.847281 | 0.546622 | 0.326768 | 0.065* | |
C6 | 0.83515 (16) | 0.5762 (2) | 0.47454 (13) | 0.0310 (3) | |
C7 | 0.89133 (16) | 0.6551 (2) | 0.56261 (13) | 0.0298 (3) | |
C8 | 0.82334 (18) | 0.4069 (2) | 0.63253 (14) | 0.0345 (4) | |
O1 | 0.52663 (15) | 1.00821 (15) | 0.16765 (9) | 0.0419 (3) | |
O2 | 0.80246 (16) | 0.30792 (16) | 0.68404 (11) | 0.0476 (3) | |
S1 | 0.47149 (4) | 0.85968 (5) | 0.31651 (4) | 0.03579 (11) | |
S2 | 0.70545 (4) | 1.04272 (5) | 0.35471 (3) | 0.02809 (9) | |
S3 | 0.80927 (5) | 0.96538 (5) | 0.58353 (3) | 0.03365 (10) | |
S4 | 0.95479 (4) | 0.83296 (5) | 0.56233 (4) | 0.03649 (11) | |
S5 | 0.89988 (5) | 0.57621 (5) | 0.68428 (3) | 0.03564 (11) | |
S6 | 0.78190 (5) | 0.40033 (5) | 0.49318 (3) | 0.03672 (11) |
4,4'-(Diselanane-1,2-diyl)bis(5-methyl-2H-1,3-dithiol-2-one) (it14ii) . Atomic displacement parameters (Å2)
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0363 (9) | 0.0215 (8) | 0.0301 (7) | 0.0009 (6) | 0.0065 (6) | −0.0033 (6) |
C2 | 0.0309 (8) | 0.0246 (8) | 0.0253 (7) | 0.0014 (6) | 0.0113 (6) | −0.0017 (6) |
C3 | 0.0306 (8) | 0.0246 (8) | 0.0321 (7) | 0.0016 (6) | 0.0136 (6) | −0.0012 (6) |
C4 | 0.0428 (10) | 0.0325 (9) | 0.0453 (9) | −0.0018 (8) | 0.0247 (8) | 0.0031 (7) |
C5 | 0.0495 (11) | 0.0536 (12) | 0.0298 (8) | 0.0029 (9) | 0.0174 (8) | −0.0026 (8) |
C6 | 0.0253 (8) | 0.0377 (9) | 0.0321 (7) | 0.0022 (7) | 0.0125 (6) | −0.0032 (7) |
C7 | 0.0232 (7) | 0.0338 (9) | 0.0313 (7) | 0.0011 (6) | 0.0075 (6) | −0.0001 (6) |
C8 | 0.0353 (9) | 0.0333 (9) | 0.0383 (8) | 0.0016 (7) | 0.0164 (7) | −0.0036 (7) |
O1 | 0.0567 (9) | 0.0324 (7) | 0.0277 (6) | −0.0020 (6) | 0.0014 (6) | −0.0005 (5) |
O2 | 0.0646 (10) | 0.0338 (7) | 0.0514 (8) | −0.0031 (7) | 0.0285 (7) | 0.0010 (6) |
S1 | 0.0296 (2) | 0.0294 (2) | 0.0422 (2) | −0.00548 (17) | 0.00317 (17) | 0.00138 (17) |
S2 | 0.0311 (2) | 0.0284 (2) | 0.02544 (17) | −0.00528 (16) | 0.01009 (15) | −0.00122 (14) |
S3 | 0.0417 (2) | 0.0317 (2) | 0.02435 (17) | −0.00303 (18) | 0.00641 (16) | −0.00476 (15) |
S4 | 0.0255 (2) | 0.0372 (2) | 0.0426 (2) | −0.00639 (17) | 0.00532 (17) | 0.00179 (18) |
S5 | 0.0422 (2) | 0.0332 (2) | 0.02811 (18) | −0.00173 (18) | 0.00668 (16) | −0.00185 (16) |
S6 | 0.0386 (2) | 0.0352 (2) | 0.0367 (2) | −0.00491 (18) | 0.01269 (18) | −0.01011 (17) |
4,4'-(Diselanane-1,2-diyl)bis(5-methyl-2H-1,3-dithiol-2-one) (it14ii) . Geometric parameters (Å, º)
C1—O1 | 1.200 (2) | C5—H5A | 0.9800 |
C1—S2 | 1.7652 (19) | C5—H5B | 0.9800 |
C1—S1 | 1.7682 (19) | C5—H5C | 0.9800 |
C2—C3 | 1.340 (2) | C6—C7 | 1.342 (2) |
C2—S2 | 1.7473 (16) | C6—S6 | 1.7363 (19) |
C2—S3 | 1.7486 (17) | C7—S4 | 1.7494 (18) |
C3—C4 | 1.496 (2) | C7—S5 | 1.7507 (17) |
C3—S1 | 1.7426 (18) | C8—O2 | 1.195 (2) |
C4—H4A | 0.9800 | C8—S6 | 1.7700 (18) |
C4—H4B | 0.9800 | C8—S5 | 1.7710 (19) |
C4—H4C | 0.9800 | S3—S4 | 2.0723 (7) |
C5—C6 | 1.492 (2) | ||
O1—C1—S2 | 124.61 (15) | C6—C5—H5C | 109.5 |
O1—C1—S1 | 123.25 (15) | H5A—C5—H5C | 109.5 |
S2—C1—S1 | 112.13 (9) | H5B—C5—H5C | 109.5 |
C3—C2—S2 | 118.62 (12) | C7—C6—C5 | 127.68 (18) |
C3—C2—S3 | 124.44 (12) | C7—C6—S6 | 115.98 (13) |
S2—C2—S3 | 116.93 (10) | C5—C6—S6 | 116.34 (14) |
C2—C3—C4 | 127.26 (16) | C6—C7—S4 | 123.61 (14) |
C2—C3—S1 | 115.65 (12) | C6—C7—S5 | 118.09 (14) |
C4—C3—S1 | 117.07 (13) | S4—C7—S5 | 118.30 (10) |
C3—C4—H4A | 109.5 | O2—C8—S6 | 123.42 (15) |
C3—C4—H4B | 109.5 | O2—C8—S5 | 125.06 (15) |
H4A—C4—H4B | 109.5 | S6—C8—S5 | 111.52 (10) |
C3—C4—H4C | 109.5 | C3—S1—C1 | 97.47 (8) |
H4A—C4—H4C | 109.5 | C2—S2—C1 | 96.03 (8) |
H4B—C4—H4C | 109.5 | C2—S3—S4 | 101.38 (6) |
C6—C5—H5A | 109.5 | C7—S4—S3 | 102.29 (6) |
C6—C5—H5B | 109.5 | C7—S5—C8 | 96.44 (8) |
H5A—C5—H5B | 109.5 | C6—S6—C8 | 97.92 (8) |
4,4'-(Diselanane-1,2-diyl)bis(5-methyl-2H-1,3-dithiol-2-one) (it14ii) . Hydrogen-bond geometry (Å, º)
D—H···A | D—H | H···A | D···A | D—H···A |
C4—H4A···S3 | 0.98 | 2.76 | 3.244 (2) | 111 |
C5—H5A···S4 | 0.98 | 2.75 | 3.234 (2) | 111 |
C4—H4B···O1i | 0.98 | 2.53 | 3.345 (2) | 141 |
C5—H5C···S3ii | 0.98 | 3.14 | 3.8063 (19) | 126 |
C5—H5C···S5iii | 0.98 | 3.01 | 3.825 (2) | 142 |
C4—H4C···S2iv | 0.98 | 3.12 | 4.021 (2) | 153 |
Symmetry codes: (i) −x+1, y−1/2, −z+1/2; (ii) x, −y+3/2, z−1/2; (iii) −x+2, −y+1, −z+1; (iv) −x+1, −y+2, −z+1.
Funding Statement
This work was funded by FP7 Ideas: European Research Council grant 281257 to C. Schulzke.
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) CSV72a12, it14ii. DOI: 10.1107/S2056989018007454/wm5446sup1.cif
Structure factors: contains datablock(s) CSV72a12. DOI: 10.1107/S2056989018007454/wm5446CSV72a12sup2.hkl
Structure factors: contains datablock(s) it14ii. DOI: 10.1107/S2056989018007454/wm5446it14iisup3.hkl
Additional supporting information: crystallographic information; 3D view; checkCIF report